mRNA_H-paniculata_contig5733.13290.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5733.13290.1
Unique NamemRNA_H-paniculata_contig5733.13290.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.180e-26
Identity = 63/142 (44.37%), Postives = 97/142 (68.31%), Query Frame = 2 
Query:   17 MMNSLDEGSIEEMMSTGGAHGDT-FHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAM--------SRINNSGSY 415
            M N +  G+I ++M  GGA G   ++P +QVV L+++   N  +DRWR+VLSDG+H  Q+MLATQ+N +++ G ++ELC + +++Y+VNVVQ+K+LII+L ++V +GP  K+G P+N  EDS A         S  NN+G Y
Sbjct:    1 MANLISRGAINQIM--GGATGAAGYNPTVQVVSLKKM--TNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAPKIGDPINFSEDSSARVKPELGGGSNNNNTGHY 138
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 9.970e-23
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = 2 
Query:  128 IVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAM--------SRINNSGSY 415
            + N  +DRWR+VLSDG+H  Q+MLATQ+N +++ G ++ELC + +++Y+VNVVQ+K+LII+L ++V +GP  K+G P+N  EDS A         S  NN+G+Y
Sbjct:    1 MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGSSNNNTGNY 104
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A1E7F2H4_9STRA (Replication protein A subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2H4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.470e-18
Identity = 46/118 (38.98%), Postives = 82/118 (69.49%), Query Frame = 2 
Query:   26 SLDEGSIEEMMSTGGAHGDT-FHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVL-TGPQAKVGKPVNIEE 373
            SL + ++  ++ +   H D+ F PV Q+++++ V   N  +DR+R++LSDG H +Q M+ATQ   L+ +G+++    ++I EY+VN VQ+KK+ I+LN++V+ T P  K+G+PV+IE+
Sbjct:    5 SLTQDAVRTLIGSNEGHQDSSFSPVCQIINIKNVTNKNDGNDRYRIILSDGVHYIQGMVATQLKHLMIDGSVKTHNIIRINEYMVNTVQAKKICIILNLDVIDTSPSEKIGEPVDIEK 122
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A7S2WB61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WB61_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.870e-18
Identity = 47/120 (39.17%), Postives = 78/120 (65.00%), Query Frame = 2 
Query:   17 MMNSLDEGSIEEMMSTGGAHGDT-FHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEE 373
            M +SL   ++  M+ + G   D  F P+LQV+ + +V   N  ++R+RV+LSDG H VQ MLATQ+N L+    + +   +K TE++ N+VQ K ++I+LN+EV++    K+G P++IE+
Sbjct:    1 MSSSLTADAVARMVKSEGKSTDPYFAPILQVLKVMKVSAANANNERFRVILSDGTHYVQGMLATQQNCLVQSQKLMDNTIIKATEFMNNLVQGKSVVILLNLEVVSSGHDKIGNPMDIEK 120
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A0F7ST61_PHARH (Replication protein A subunit n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7ST61_PHARH)

HSP 1 Score: 91.7 bits (226), Expect = 1.730e-17
Identity = 43/106 (40.57%), Postives = 74/106 (69.81%), Query Frame = 2 
Query:   83 TFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSRIN 400
            TFHPVLQV++++RV  +   SDR+R++LSD  + +Q MLATQ N ++++G++Q    +K+T + +N+V S++L+IVL +EV+     K+G+  NIE+  + +   N
Sbjct:   25 TFHPVLQVINIKRVAPMGEQSDRYRLILSDANYYIQGMLATQFNQMIDDGSLQRYSIIKLTNFAINMVHSRRLVIVLGMEVVQSVAEKLGETENIEKVENPIGPAN 130
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A199VIT2_ANACO (Replication protein A 70 kDa DNA-binding subunit C n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VIT2_ANACO)

HSP 1 Score: 87.8 bits (216), Expect = 2.270e-17
Identity = 47/122 (38.52%), Postives = 77/122 (63.11%), Query Frame = 2 
Query:   29 LDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSR 394
            L  G++  + S GGA G    PVLQV  LR V    + ++R+R++LSDG H  Q MLATQ N ++  G++Q+   V++ EY+ NV+Q +++II++N+EVL G    +G P   + ++ + S+
Sbjct:    7 LTRGAVAAI-SEGGAEG--MRPVLQVWDLRLVNTAQSTTERYRMLLSDGVHMQQAMLATQMNGIVKSGSLQKGSIVQLNEYICNVIQGRRIIIIINLEVLRGESEMIGNPKTYDNNATSASQ 125
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-16
Identity = 50/115 (43.48%), Postives = 80/115 (69.57%), Query Frame = 2 
Query:   20 MNSLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVN 364
            M +L  GSI+++++ G   G T  P LQV+++++V      +DR+R+++SDG++  Q MLATQ N L++   +QELC VK+T Y+VN VQ ++++I L +EV++GP  KVG P N
Sbjct:    1 MANLTSGSIQQIVN-GEVTGLT--PTLQVINVKKVQ--GAGADRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVPKVGDPQN 110
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: M2XRH2_GALSU (Replication protein A subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XRH2_GALSU)

HSP 1 Score: 88.6 bits (218), Expect = 2.010e-16
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 2 
Query:   26 SLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRV--GIVNTP-SDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSRI 397
            +L  GS++ +     A   T   VLQV+ L+++     N P ++R+R+VLSD RH  Q+ML+TQ N L+ E  +Q  C V++ EY+VN V  K++IIVLN+E +TGP  K+G PVN+E+  +  + +
Sbjct:    6 ALSVGSVKAIY----AGETTQQAVLQVLELKKIIPSGQNVPQTERYRMVLSDSRHYQQSMLSTQLNALVREQKVQTGCLVRLLEYVVNDVAQKRIIIVLNLEPVTGPLEKIGNPVNVEQAQNVQTGL 128
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A6I9R6K3_ELAGV (Replication protein A subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R6K3_ELAGV)

HSP 1 Score: 88.2 bits (217), Expect = 2.990e-16
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = 2 
Query:   29 LDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEED---------SHAMSRINNSGSYAAGDANQYGG 445
            L  G+I  M+S GGA G    PVLQV  +R V    + ++R+R++LSDG HT Q MLATQ N ++  GT+Q+   V++ E++ N +Q +++IIV+N+EVL      +G P   +             A S   N  S AAG+   YGG
Sbjct:    6 LTRGAIA-MISEGGAEG--MKPVLQVSDVRLVNTTQSTTERYRMMLSDGVHTQQAMLATQMNPIVKNGTLQKGSVVQLNEFICNTIQGRRIIIVINLEVLVPKSDIIGAPTPFDSGVSASQNRAPMSAQSTSINQPSMAAGNPQPYGG 150
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BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Match: A0A396HQ15_MEDTR (Replication protein A subunit n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396HQ15_MEDTR)

HSP 1 Score: 88.2 bits (217), Expect = 3.010e-16
Identity = 55/144 (38.19%), Postives = 91/144 (63.19%), Query Frame = 2 
Query:   26 SLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRV-GIVNTPSDRWRVVLSDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLNIEVLTGPQAKVGKPVNIEEDSHAMSRINNSGSY--AAGDANQYGGN 448
            +L +G+I  M  T     +  HPVLQV+ L+ V    N+ ++R+RVVLSDG H  Q MLATQKN L++ G +Q+   VK+++++ NVVQ++K+II+++++V+      +GKP    ++  A S ++++G+   AAG      GN
Sbjct:    4 NLTQGAIVTMCFTS----EDLHPVLQVIDLKLVQSQQNSGTERYRVVLSDGLHYQQGMLATQKNELVHSGRLQKGSIVKLSQFICNVVQNRKIIIIVDLDVIMDKCDLIGKPDPAPKEDPAQSAVSHAGNVQSAAGHLGSNAGN 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5733.13290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE1.180e-2644.37Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU2_ECTSI9.970e-2347.12Rep-A_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A1E7F2H4_9STRA1.470e-1838.98Replication protein A subunit n=1 Tax=Fragilariops... [more]
A0A7S2WB61_9STRA2.870e-1839.17Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A0F7ST61_PHARH1.730e-1740.57Replication protein A subunit n=1 Tax=Phaffia rhod... [more]
A0A199VIT2_ANACO2.270e-1738.52Replication protein A 70 kDa DNA-binding subunit C... [more]
A0A7S3XQ94_HETAK1.090e-1643.48Replication protein A subunit n=1 Tax=Heterosigma ... [more]
M2XRH2_GALSU2.010e-1640.94Replication protein A subunit n=1 Tax=Galdieria su... [more]
A0A6I9R6K3_ELAGV2.990e-1638.51Replication protein A subunit n=3 Tax=Arecaceae Ta... [more]
A0A396HQ15_MEDTR3.010e-1638.19Replication protein A subunit n=1 Tax=Medicago tru... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5733contigH-paniculata_contig5733:840..5297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog2880.D7FUU2
Preferred nameRFA1
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006278,GO:0006279,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007059,GO:0007063,GO:0007088,GO:0007127,GO:0007129,GO:0007131,GO:0007140,GO:0007141,GO:0007275,GO:0007276,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010833,GO:0010948,GO:0016043,GO:0016567,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030491,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032392,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045132,GO:0045143,GO:0045184,GO:0045786,GO:0045839,GO:0045875,GO:0045930,GO:0045935,GO:0046483,GO:0048229,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051026,GO:0051052,GO:0051054,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070192,GO:0070647,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0071922,GO:0071923,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0098813,GO:0098847,GO:0106111,GO:0106112,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902969,GO:1903046,GO:1903047,GO:1903827,GO:1903828,GO:1904356,GO:1904358,GO:1905405,GO:1905412,GO:1905634,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
EggNOG free text desc.DNA recombination
EggNOG OGsCOG1599@1,KOG0851@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Exons4
Model size742
Cds size726
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5733.13290.1prot_H-paniculata_contig5733.13290.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5733 856..5297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930617.2137635-UTR-H-paniculata_contig5733:839..8551622930617.2137635-UTR-H-paniculata_contig5733:839..855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5733 840..855 +
1691481374.3819237-UTR-H-paniculata_contig5733:839..8551691481374.3819237-UTR-H-paniculata_contig5733:839..855Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5733 840..855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930617.233297-CDS-H-paniculata_contig5733:855..9421622930617.233297-CDS-H-paniculata_contig5733:855..942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 856..942 +
1691481374.396479-CDS-H-paniculata_contig5733:855..9421691481374.396479-CDS-H-paniculata_contig5733:855..942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 856..942 +
1622930617.2490134-CDS-H-paniculata_contig5733:3316..35101622930617.2490134-CDS-H-paniculata_contig5733:3316..3510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 3317..3510 +
1691481374.4110055-CDS-H-paniculata_contig5733:3316..35101691481374.4110055-CDS-H-paniculata_contig5733:3316..3510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 3317..3510 +
1622930617.2677457-CDS-H-paniculata_contig5733:4270..43611622930617.2677457-CDS-H-paniculata_contig5733:4270..4361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 4271..4361 +
1691481374.4212859-CDS-H-paniculata_contig5733:4270..43611691481374.4212859-CDS-H-paniculata_contig5733:4270..4361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 4271..4361 +
1622930617.2868946-CDS-H-paniculata_contig5733:4943..52971622930617.2868946-CDS-H-paniculata_contig5733:4943..5297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 4944..5297 +
1691481374.4307024-CDS-H-paniculata_contig5733:4943..52971691481374.4307024-CDS-H-paniculata_contig5733:4943..5297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5733 4944..5297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5733.13290.1

>prot_H-paniculata_contig5733.13290.1 ID=prot_H-paniculata_contig5733.13290.1|Name=mRNA_H-paniculata_contig5733.13290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=242bp
MMNSLDEGSIEEMMSTGGAHGDTFHPVLQVVHLRRVGIVNTPSDRWRVVL
SDGRHTVQTMLATQKNFLLNEGTIQELCFVKITEYLVNVVQSKKLIIVLN
IEVLTGPQAKVGKPVNIEEDSHAMSRINNSGSYAAGDANQYGGNGNSNPH
GGGGGAGAGPNSYGGNGHGNLYGGGGNSKSYGGNGNANPYGGGDDVKPYG
GKGNANPYRGREDVKPKVGSSNPYGQQSKAASNPYGGDDRR*
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mRNA from alignment at H-paniculata_contig5733:840..5297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5733.13290.1 ID=mRNA_H-paniculata_contig5733.13290.1|Name=mRNA_H-paniculata_contig5733.13290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4458bp|location=Sequence derived from alignment at H-paniculata_contig5733:840..5297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAACGACCAGTTTATGATGAATTCGCTAGATGAGGGATCCATTGAGG
AGATGATGAGTACCGGCGGGGCCCATGGCGACACCTTCCACCCAGTACTG
CAGGTGACCGAAAAGCAAACTCTAGCTCGCAAGACATGTATTTTGATTAT
TTCGTTTTTTGAAAAAGTGTGAGGACTTGACCGCCATAGCTTGCTCGTTT
CTCGCGCCCGGACACCTATCCAGGGTTGCTTGATGTCAACAAGAGAGTGA
TCTGTCTCCCAAACCACGATGGGTTTGTTCTGGGGAATGGCTTGTTTGTC
ACATGAGACCGTGCGGGATGTACATAAGAGACTCCTTGCGGGCTTGACCC
ATAGACGAGTAGTGTTCGTTCAAGTAATTGTTTTTTTCTGTTCACATACA
CAGAACAGGACCAGTCACACGGTCCGATGCATCATGTGGGTTGACTTTTC
GATAGATGCTGGCAAACCGCATATGTGATGAGGCATCTATAACGCTGGAG
AAAGAAGCATGCGCGTTACTGCTTTCTGTATGCAGATGGACTTATGTTTG
CACATCCACGCGTGTAGGCTACAGCTGCCCAGATTTACCCGTCCGTTTCT
TCGATACGCGAAGAAATTCAAACCTTTTTTCGCATCCTTCAACAACCAAA
ACATGTTGAGTTATTCTAGGCATGAGCTCTCGGAAATGGCTATGGACTGC
ACATATCATCGTGCACGAGTTGCGAAGCACGTCGAGTGCAGCACTATAGG
CATCTTCTATCTGTGGTACCAGCTCTCTGTTGGGGTTTCGTTTTCCTCGG
CCATCAAAACGCCCGATGATGTGTCAAACGTGCGTGCGACGTTCCAACTA
GTTCAAAAGGCGGAAAGTCAATTCACCTCTTCATCATACCTGTGGTATTT
GTTATTATTATTTATATTTTAAGATGCTTTTCTCCTCCTATCACGTAGAA
CTACGGTCAGTCTTGAGTCTTGCTTGAGTAAGCATGTATTTACTTTGATC
TACTCCAAGCAATGACGTACACACATTGCGCCTATTCTACACATTGCTAG
CACACTTGTTCATCCATCAGGGGTTTAGAGCTGAACAACTTTTATGGCAC
ACCCAATCTGACATCACTACCCTGGGCCACGGTAATCTCGGGAAAACCAA
GCGCTTTTCTATTTCAACCATCTAAGGTATAAATGAACCGCAATAATTAA
GATTTTGAAGATTACTGAGAAGAGTTGAAGGTTTCACGTTCTGACTCAAT
CACAAAATCCCAATCCATTTTATCTCAACTATGCAATGTGGTGAAGCACT
CGGTGAACGTGATTATCTCTCTGCCTGGGTTAACCTGGAGTCCAGCTGAA
ATCTTGATCATTTTTACGTGGACCATAAAAAAAGTGACTGACGGGCTCTA
TACAATGACTGTTGTGATGAAACACTTGATGAACGTAGTTCTCTCTCCCT
AGGTTAACCCGGAGTTCAGCTGAAATCTTGATTATTTTACCTGGACCATA
AAAAAATGGCTGACTGTTGCCTATGTCGCGCGGGTGAAGTGTACATTGGA
AGCAAATATGCAGTCAGCGTGTGTTGGAGACGTGCAGCACAGTGAGTACT
ACTTGAAGCGCGGTCACTTGGGTGCAGTCTGTCTGGGAAAGGAAACAGTC
AGCATAACTTGGTAAAATACACGAAAGAGGCGTGTTCTGGATTGGGATGA
TGCGAGATGTCCCGTAGTAGGATAAGGAGTAATATGAAGTGTCTGAGGAT
CTAGCTTTGCCCTGTGAGCAATATTCAATGTTCCCTGGAGCCTGGCAGAT
CTCGCAGGCTGATCGCCGCGTGTTGTCGATATACCCCCCCTGCACTGACG
GTCTGTAAGTCAGCCTGTGACTTTTTGCTTGGTATATATTTTTCTTGTTT
GACGTAATTTCGCTTATTTTCACAAGCAAAATCAGTTGGTCGAAATGGGC
TCGCGTCACCCCCGACAGAGCCACAGATCTTGCCTGCAACGCAGCGGCCC
ATGCATAGCCTGCTGCGTTTGCATTCGTGGAGTGCTGTAGTCGTGTGATG
CTCAGAATGATGCCAATTTGACCATGCTGTGTGTGTACACGGCGACTCCC
TCTCCCGTTGTTCGGATATCTGCATACGCGTGCTACCAGAAAAATATCCG
ACCTATTTTTCACCTGGCCATACATTTTGTTCATCTCTGAGCAGCTGCGA
AGCTTACAGGATTGAAGATACAACATTCGATATCACCAGTCATTCACATG
TGATTGAGGACTAGCAGTGCAGCCGCGGGTACGCCCGCCCAGCCCACATT
TCGTCCTCTTGCCCCCGTCGTCAAAATCCATCACCGACGCACGACGTGGT
CCCCCGCGCATGCTGCGAGACCACTGTCGATAGCATAGCTCCTTAGGTTT
GATGAAGGATTACCCCAGAGATTGCAAGGTAATCTGTGAGTACCGTCCAC
TGTTGGTTGATGCGTGTTGTGTCAAAGGTTGTGCATTTGAGGAGGGTTGG
CATCGTGAACACCCCTAGCGATCGCTGGAGAGTCGTCCTGTCGGACGGGC
GGCACACCGTGCAGACCATGCTGGCCACGCAGAAAAACTTCTTGCTGAAC
GAGGGAACGATACAGGAGCTGTGTTTCGTGAAGATAACCGAGTACTTGGT
CAACGTCGTCCAAAGCAAAAAGTGAGCCCTGCGTTTTTATAATATAGTCT
TGATCCAAACGCTTCACTTTGGTCCATTAATTGATCGAGGCGCGTGGTTC
GAAGCGGGGAATGTAATCCCTCGGGTTTTGTCTTGTATTATCGGTCGGTT
GAGATAGGCAGCAGTCCCACTCGCCTATCAACCTTGGGAAATTGAAGGTG
ATATTCTCTGAAGAGTGTTCTTTCTGCCATTCCCCAAGCGGTTCTGCCGT
ATAAGTTTGACATGAAAAGTCACTAGTTCTGAGAGTAAAATCCACAAGCA
CCCTACCGTCATTTGATCACGAGGCGCACGGTTTGCTGGGTTGCACTACT
ACTACTACTACTACTAGTAGTAGTAGTAGTAGTAGTACTAGGCCATGGAG
GGAAAGATGGATTTTGACACAAGTTACACATTGAACTGAAGTGAGAAATT
TCACATGGCAAAACAACGCATTGAAAAGAAACACGATTTTGGGGGCATAC
TACGGGAGGAAGGGAGCTGCTGCAGTAGAGACTGACGTGTATCGTCATTT
TTGTTTTTGTTGACGCGTTTGACCCACCACAACATTATATTTAATCGGAT
CTTCACGACGTAGAGCTACAGCTGGATGGAACAGGTTCCCGAATCCCAGT
TCTGATGTCAACAACGGCAAGGTGTTGTTTTTTTTTCCCACCCCGATGCA
CAGACGTACAACTGTTCGCATGTCTCCGTTTTGTGTGTGCTTTGTTGTAA
TCGTTTGTTTCTCCCGCAAATAAACGGACAGGTTAATCATCGTCTTGAAC
ATTGAAGTGTTGACGGGACCTCAGGCCAAGGTGGGGAAGCCCGTTAACAT
CGAGGAAGATTCCCACGCCATGGTGAGCAAAAAAAAAACAAGCGAAAAGT
GGCTGCGAAACAAGGAAATTTTCCGATATAAAGTATTTTCACGTCGATTC
ATGGATTACGTTTACACCTTGCTACGACCAAAATATACGTGTTCCTAACG
ACCCGTCGTGAATAATCCACCAACACGTCTACAGCGTGCTCAACCGTCCC
TAGACAGTTATCTGGGTAGCGTATCTCAGGTCTACTTTTTTGTTTTGCCG
AGTGGGGGACCTTATTTTATTGGATTTAGAGTAGAGCGAGACCGACCCAA
CACCCGTTTTTATCATAACGACCAAAGCCTGATGGAGGAGTTCGTAGGCT
CATGAAGGCTTAAGAGCTCCCGGCATTTTTTTGTAGGTCAAAATTACGTA
TTTCTACATGAAAAAATGTATTAATCGGTTTTTGTAAATGCGAGCCCCCA
AGTTCCGCAACGGGAGACTTGTGCCCCCTATATCAAATACCTGAAAATTC
CATATTACAAATATATTCTAAGAACGTTCTGCCATATAAGCACATCCGAC
CCCATTCGCTTAGCCTGGCAACCCGCGACCCATCCCACTGCGCATGCGCC
GCAGTCTCGGATCAACAACTCTGGATCTTACGCCGCCGGAGATGCCAACC
AATATGGAGGCAACGGTAACTCTAACCCCCACGGAGGTGGTGGCGGGGCG
GGGGCAGGTCCGAATTCCTACGGCGGCAATGGTCACGGCAACCTCTACGG
GGGGGGAGGAAATAGCAAGTCCTACGGAGGCAATGGTAATGCTAATCCTT
ATGGGGGAGGAGATGATGTCAAGCCCTACGGTGGCAAAGGTAACGCCAAC
CCGTACAGGGGACGAGAGGATGTCAAGCCCAAAGTTGGATCCAGCAACCC
ATACGGACAGCAATCCAAGGCGGCGTCGAATCCATACGGAGGTGATGATC
GGCGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5733:840..5297+

>mRNA_H-paniculata_contig5733.13290.1 ID=mRNA_H-paniculata_contig5733.13290.1|Name=mRNA_H-paniculata_contig5733.13290.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1452bp|location=Sequence derived from alignment at H-paniculata_contig5733:840..5297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAATTCGCTAGATGAGGGATCCATTGAGGAGATGATGAGTACCGG
CGGGGCCCATGGCGACACCTTCCACCCAGTACTGCAGATGATGAATTCGC
TAGATGAGGGATCCATTGAGGAGATGATGAGTACCGGCGGGGCCCATGGC
GACACCTTCCACCCAGTACTGCAGGTTGTGCATTTGAGGAGGGTTGGCAT
CGTGAACACCCCTAGCGATCGCTGGAGAGTCGTCCTGTCGGACGGGCGGC
ACACCGTGCAGACCATGCTGGCCACGCAGAAAAACTTCTTGCTGAACGAG
GGAACGATACAGGAGCTGTGTTTCGTGAAGATAACCGAGTACTTGGTCAA
CGTCGTCCAAAGCAAAAAGTTGTGCATTTGAGGAGGGTTGGCATCGTGAA
CACCCCTAGCGATCGCTGGAGAGTCGTCCTGTCGGACGGGCGGCACACCG
TGCAGACCATGCTGGCCACGCAGAAAAACTTCTTGCTGAACGAGGGAACG
ATACAGGAGCTGTGTTTCGTGAAGATAACCGAGTACTTGGTCAACGTCGT
CCAAAGCAAAAAGTTAATCATCGTCTTGAACATTGAAGTGTTGACGGGAC
CTCAGGCCAAGGTGGGGAAGCCCGTTAACATCGAGGAAGATTCCCACGCC
ATGGTTAATCATCGTCTTGAACATTGAAGTGTTGACGGGACCTCAGGCCA
AGGTGGGGAAGCCCGTTAACATCGAGGAAGATTCCCACGCCATGTCTCGG
ATCAACAACTCTGGATCTTACGCCGCCGGAGATGCCAACCAATATGGAGG
CAACGGTAACTCTAACCCCCACGGAGGTGGTGGCGGGGCGGGGGCAGGTC
CGAATTCCTACGGCGGCAATGGTCACGGCAACCTCTACGGGGGGGGAGGA
AATAGCAAGTCCTACGGAGGCAATGGTAATGCTAATCCTTATGGGGGAGG
AGATGATGTCAAGCCCTACGGTGGCAAAGGTAACGCCAACCCGTACAGGG
GACGAGAGGATGTCAAGCCCAAAGTTGGATCCAGCAACCCATACGGACAG
CAATCCAAGGCGGCGTCGAATCCATACGGAGGTGATGATCGGCGATGATC
TCGGATCAACAACTCTGGATCTTACGCCGCCGGAGATGCCAACCAATATG
GAGGCAACGGTAACTCTAACCCCCACGGAGGTGGTGGCGGGGCGGGGGCA
GGTCCGAATTCCTACGGCGGCAATGGTCACGGCAACCTCTACGGGGGGGG
AGGAAATAGCAAGTCCTACGGAGGCAATGGTAATGCTAATCCTTATGGGG
GAGGAGATGATGTCAAGCCCTACGGTGGCAAAGGTAACGCCAACCCGTAC
AGGGGACGAGAGGATGTCAAGCCCAAAGTTGGATCCAGCAACCCATACGG
ACAGCAATCCAAGGCGGCGTCGAATCCATACGGAGGTGATGATCGGCGAT
GA
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