prot_H-paniculata_contig5725.13275.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5725.13275.1
Unique Nameprot_H-paniculata_contig5725.13275.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length365
Homology
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BLAST of mRNA_H-paniculata_contig5725.13275.1 vs. uniprot
Match: A0A6H5J7E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7E6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.130e-26
Identity = 105/272 (38.60%), Postives = 142/272 (52.21%), Query Frame = 0 
Query:  104 RIPRSSNATPTASTSSLLVGDEDPTGCTEDMHVLVPINDVVCTPLSALSEAAADTLSGAGGGNIDNMHVRIEMDRFCRTLESVFRTDYSGRVDRANAAPLLGGRWDRAGAAAATAAAAGS----VSTPDSAQHKTNGLVLS--------AAGNQVARIDGKAKQSIVDETVVQRTGRWRRVPWKRGDQKARNERRNTSEGGVAPETEQKQG--RWSRNATGRRRSRDREDPAR----AAEERCLPLLHLVEDLVRDAMFSPISERDVMMSQA 357
            R P    AT   S   +LVG  +P     D++VLVP+ DVV  PL+ +S+AAAD+L   GGG+      R+ M+RFC+TLESVFRT++S +VDRANA  +LGG  DR  A   +  A G        P + Q    G            + G  +A   G  K++   ++   + GRWR    +R  +   +   +  E   AP  E   G  R  R+  G+RRS   +D  R    A E   +PLL LV++LVR+AMFSPI  RDVMMSQA
Sbjct:   62 RPPSRLAATAAKSGREVLVGITEPGHEDTDVNVLVPVKDVVPVPLADISQAAADSL---GGGDA----TRVSMERFCKTLESVFRTEFSVKVDRANADFVLGGGRDRTTAGRGSRGAGGGELLQAPQPQAGQTTKEGGAKGEGSAGDDESPGTAMATTKGVLKKA--GDSWKSKRGRWR-DSLRRKKKIEADASEDLGEAPPAPAAEVVAGKRRGKRSGGGKRRSGRGDDSRRIVDRAGETAAVPLLELVDELVRNAMFSPIGARDVMMSQA 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5725.13275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7E6_9PHAE4.130e-2638.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..364
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5725contigH-paniculata_contig5725:7624..9371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5725.13275.1mRNA_H-paniculata_contig5725.13275.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5725 7608..11063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5725.13275.1 ID=prot_H-paniculata_contig5725.13275.1|Name=mRNA_H-paniculata_contig5725.13275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=365bp
MGINNALWLGILLCAKSRIAPAFRMPAQIAPTLRSRRRGLTTLAAEPNDP
SNGTEGRLRPKRIARARSASPREKDATGMVDGSDINRSGTGSSSKSSRSG
GKKRIPRSSNATPTASTSSLLVGDEDPTGCTEDMHVLVPINDVVCTPLSA
LSEAAADTLSGAGGGNIDNMHVRIEMDRFCRTLESVFRTDYSGRVDRANA
APLLGGRWDRAGAAAATAAAAGSVSTPDSAQHKTNGLVLSAAGNQVARID
GKAKQSIVDETVVQRTGRWRRVPWKRGDQKARNERRNTSEGGVAPETEQK
QGRWSRNATGRRRSRDREDPARAAEERCLPLLHLVEDLVRDAMFSPISER
DVMMSQARRNGVFF*
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