prot_H-paniculata_contig5699.13241.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5699.13241.1
Unique Nameprot_H-paniculata_contig5699.13241.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length99
Homology
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: D7FWG1_ECTSI (Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG1_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.520e-52
Identity = 92/101 (91.09%), Postives = 93/101 (92.08%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKG-FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDEDQAK-DEAE-ANGMDEDEDEG 98
            MATPVNPKPFLNELTGKPVMVKLKWGMEYKG FLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRG E DE  AK D AE ANGMDE+EDEG
Sbjct:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGVEEDEANAKADGAEGANGMDEEEDEG 101          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A9S411_PHYPA (Sm protein F n=5 Tax=Streptophytina TaxID=131221 RepID=A9S411_PHYPA)

HSP 1 Score: 141 bits (355), Expect = 6.670e-42
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDEDQAKDE 85
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEE+VDG F GNLG+VLIRCNNV+YLRG   DED A+D+
Sbjct:    1 MATIPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEFVDGAFTGNLGEVLIRCNNVMYLRGVPEDEDAAEDD 86          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A176VZF1_MARPO (Sm protein F n=3 Tax=Viridiplantae TaxID=33090 RepID=A0A176VZF1_MARPO)

HSP 1 Score: 141 bits (355), Expect = 6.670e-42
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDEDQAKDE 85
            MAT PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVSVD+YMNL L STEEY+DG+F GNLG+VLIRCNNVLYLRG   DED  +++
Sbjct:    1 MATVPVNPKPFLNDLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLASTEEYIDGQFTGNLGEVLIRCNNVLYLRGVPEDEDAVEED 86          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: C1EHA5_MICCC (Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=C1EHA5_MICCC)

HSP 1 Score: 139 bits (351), Expect = 2.640e-41
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAE 76
            PVNPKPFLN+LTGKP++VKLKWGMEYKGFLVS D YMNL L STEEYVDG+FAGNLG+VLIRCNNVLYLRGAE
Sbjct:    6 PVNPKPFLNQLTGKPIIVKLKWGMEYKGFLVSTDAYMNLQLASTEEYVDGKFAGNLGEVLIRCNNVLYLRGAE 78          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A7S0SJP6_9CHLO (Sm protein F n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SJP6_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 5.520e-41
Identity = 63/75 (84.00%), Postives = 70/75 (93.33%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAE 76
            + PVNPKPFLN+LTGKPV+VKLKWGMEYKG+LVS D YMNL L STEEY+DG+FAGNLG+VLIRCNNVLYLRGAE
Sbjct:    4 SVPVNPKPFLNQLTGKPVIVKLKWGMEYKGYLVSTDAYMNLQLASTEEYIDGQFAGNLGEVLIRCNNVLYLRGAE 78          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 139 bits (349), Expect = 6.960e-41
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDED 80
            + PVNPKPFLN LTGKPVMVKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG   DE+
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEE 88          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A835M2E4_9MAGN (Sm protein F n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835M2E4_9MAGN)

HSP 1 Score: 138 bits (348), Expect = 8.260e-41
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 0
Query:    2 ATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDED 80
            + PVNPKPFLN LTGKPVMVKLKWGMEYKG+LVSVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG   DED
Sbjct:    4 SVPVNPKPFLNTLTGKPVMVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGKFTGNLGEILIRCNNVLYLRGVPEDED 82          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 137 bits (345), Expect = 2.230e-40
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    1 MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDED 80
            M+ PVNPKPFLN LTGKPV+VKLKWGMEYKGFL SVD+YMNL L +TEEY+DG+F GNLG++LIRCNNVLYLRG   DE+
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEE 80          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A059CKE6_EUCGR (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A059CKE6_EUCGR)

HSP 1 Score: 137 bits (345), Expect = 2.300e-40
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    1 MAT-PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDED 80
            MAT PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEY+DG+F G+LG++LIRCNNVLYLRG   DED
Sbjct:    1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDED 81          
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Match: A0A7I8LGH6_SPIIN (Sm protein F n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGH6_SPIIN)

HSP 1 Score: 137 bits (345), Expect = 2.300e-40
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0
Query:    4 PVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEYVDGEFAGNLGDVLIRCNNVLYLRGAEGDED 80
            PVNPKPFLN LTGKPV+VKLKWGMEYKGFLVSVD+YMNL L +TEEYVDGEF GNLG++LIRCNNVLYLRG   D++
Sbjct:    7 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYVDGEFTGNLGEILIRCNNVLYLRGVPEDDE 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5699.13241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWG1_ECTSI1.520e-5291.09Sm protein F n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A9S411_PHYPA6.670e-4279.07Sm protein F n=5 Tax=Streptophytina TaxID=131221 R... [more]
A0A176VZF1_MARPO6.670e-4277.91Sm protein F n=3 Tax=Viridiplantae TaxID=33090 Rep... [more]
C1EHA5_MICCC2.640e-4187.67Sm protein F n=2 Tax=Micromonas TaxID=38832 RepID=... [more]
A0A7S0SJP6_9CHLO5.520e-4184.00Sm protein F n=1 Tax=Mantoniella antarctica TaxID=... [more]
A0A7J6WA49_THATH6.960e-4179.75Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
A0A835M2E4_9MAGN8.260e-4179.75Sm protein F n=1 Tax=Coptis chinensis TaxID=261450... [more]
A0A6P9F5Z8_JUGRE2.230e-4077.50Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A059CKE6_EUCGR2.300e-4080.25Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]
A0A7I8LGH6_SPIIN2.300e-4081.82Sm protein F n=1 Tax=Spirodela intermedia TaxID=51... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 4.4E-23
score: 92.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..72
e-value: 3.5E-20
score: 71.5
NoneNo IPR availableGENE3D2.30.30.100coord: 1..86
e-value: 2.3E-30
score: 105.9
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN POLYPEPTIDE Fcoord: 1..82
IPR016487Sm-like protein Lsm6/SmFPIRSFPIRSF006609snRNP_SmFcoord: 1..84
e-value: 1.3E-36
score: 122.3
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..82
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5699contigH-paniculata_contig5699:2749..4888 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5699.13241.1mRNA_H-paniculata_contig5699.13241.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5699 2496..5859 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5699.13241.1 ID=prot_H-paniculata_contig5699.13241.1|Name=mRNA_H-paniculata_contig5699.13241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MATPVNPKPFLNELTGKPVMVKLKWGMEYKGFLVSVDTYMNLLLTSTEEY
VDGEFAGNLGDVLIRCNNVLYLRGAEGDEDQAKDEAEANGMDEDEDEG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR010920LSM_dom_sf