mRNA_H-paniculata_contig5689.13233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5689.13233.1
Unique NamemRNA_H-paniculata_contig5689.13233.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: D7FYS9_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 9.420e-15
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 2 
Query:   83 MATPLNQGLPIQDVPPKGGFPAIKIARHLPN-RGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVY--RTHLAYKQKIINSKNKFAEKVDL 418
            MATP+  G  +QDV PKGGFP ++I+R LP+ RGP G V+ G   + M  G    G  N  R+  + EKRLARIAL+P+LQ+E D++ V   R +   ++ +  S N + E+ +L
Sbjct:    1 MATPVGTGPIVQDVAPKGGFPKVQISRQLPSGRGPRGSVVLGLVTVTMAVGYYKLGQANKARRAEQHEKRLARIALMPMLQAEEDRKAVLAKRFNAQLQKGLHESLNAWKEEEEL 115
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A061QUA6_9CHLO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QUA6_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 9.080e-14
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 2 
Query:  113 IQDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLAYKQKIINSKNKFAEKVDLRGHLGPRLIGHD----PKDFKS 472
            +QD PP GGFP+I+IAR +PN GP G  +FG   L+M  G    G TN +R+  K E+   R ALVP LQ+E D     R +L  K++++  +    + VD    +G  +   D    P DFKS
Sbjct:   21 LQDGPPPGGFPSIRIARRIPNTGPSGAAIFGVGALVMSYGFYLVGQTNIQRRADKAEREHVRRALVPFLQAEED-----RRYLKAKKQLLEKEASIMKDVD-GWEVGRSVFNSDRWMPPSDFKS 138
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A7S1FYH9_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYH9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.600e-13
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:   92 PLNQGLPIQDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYR 352
            P N G  +QD+PPKGG+P I+ ARHLPNRGP GW ++ G  L++  G    G  N +R + K+     R  +V  LQ+E DQE+  R
Sbjct:    5 PPNIGPFVQDMPPKGGYPKIRTARHLPNRGPPGWALWSGTALLISYGFYQVGQGNQRRTREKMAILRQREEMVAELQAETDQEYAKR 91
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A7S3CKE5_9SPIT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CKE5_9SPIT)

HSP 1 Score: 73.6 bits (179), Expect = 7.100e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  113 IQDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFV 346
            +QD PP GGFP+++IAR +PN GP G  +FG   L++  G    G TN +++  + EK   R ALVP+LQ+E D+ FV
Sbjct:   23 LQDGPPAGGFPSVRIARRIPNTGPSGAAVFGVGALVISYGFYIVGQTNIQKRADRAEKEAVRRALVPVLQAEEDRRFV 100
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A836C7G5_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7G5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.030e-11
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = 2 
Query:   83 MATPLNQGLPIQDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLAYKQKIINSKNKFAEKVDLRGHLGPRLIG 448
            MA P N+ +P QD+PP+GG+P I IARH P RGP GW ++ G    +  G     N N +R     EKR AR+ +   LQ++ D +     H+  +++ +       E+ ++ GH+    +G
Sbjct:    1 MAMPRNE-IPYQDMPPRGGYPKITIARHTPTRGPPGWAIWAGAAAFVGYGFYGLINGNKRRNAMAREKREARMNIQAFLQADADAQ-----HIRVQRRFMR------EEEEIMGHVPNWKVG 110
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: M5G820_DACPD (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5G820_DACPD)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-11
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 2 
Query:  116 QDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLAYKQKIINSKN 394
            QD+PP GGF AI+  R+LP +GP G V+FG   L+   GL   G  N ++++   EK+ ARI LVP+L +E D+  V R ++A +++    KN
Sbjct:    7 QDMPPTGGFEAIRYKRYLPYKGPSGAVIFGAFFLVSAYGLYRVGMGNREKRELLREKQWARIHLVPILMAEADRNLVRREYVALEREKELMKN 99
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A4Q1BK48_TREME (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BK48_TREME)

HSP 1 Score: 68.6 bits (166), Expect = 2.360e-10
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 2 
Query:  116 QDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLA 364
            QD+PP GG+ AIK  R+LP RGP G V+FG  GLI   G    G  N ++++ K E   +RI LVPL+ +E D++  YR H A
Sbjct:    7 QDMPPPGGYEAIKYKRNLPIRGPGGAVIFGAVGLICAFGFYRVGQGNLEKRELKRELAWSRIHLVPLILAEQDRD-TYRRHEA 88
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A194SC06_RHOGW (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Rhodotorula TaxID=5533 RepID=A0A194SC06_RHOGW)

HSP 1 Score: 67.4 bits (163), Expect = 5.980e-10
Identity = 37/83 (44.58%), Postives = 53/83 (63.86%), Query Frame = 2 
Query:  116 QDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLA 364
            QD+PP+GGFPAIK  R+LP +GP G ++FG  G I   G    G  N ++++ + E+  ARI LVP L +E D++ +YR   A
Sbjct:    7 QDLPPQGGFPAIKYKRNLPTKGPGGALIFGVVGAICTFGFWRVGQGNLEKRELQRERAWARIHLVPALLAENDRD-IYRREQA 88
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A0C3MB32_9AGAM (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3MB32_9AGAM)

HSP 1 Score: 67.4 bits (163), Expect = 6.140e-10
Identity = 46/125 (36.80%), Postives = 63/125 (50.40%), Query Frame = 2 
Query:  116 QDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLAYKQKIINSKNKFAEKVDLRGHLGPRLIGHDPKDFKSE*AVSL 490
            QD+PP GGF AIK  R+LP +GP G VM  G  L    G    G  N ++++ K EK  ARI LVP+L +E D++   R   A +++    K       D+ G    + + HD K    E  V L
Sbjct:    7 QDLPPPGGFEAIKYKRNLPFKGPSGIVMLAGVTLFCGYGFYRVGQGNLEKRELKREKTWARIHLVPMLLAEGDRDAYRRQQAALEREKEIMK-------DVPGWEAGKSVYHDKKHVPRESIVVL 124
[Close]
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Match: A0A1Y2G200_9BASI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2G200_9BASI)

HSP 1 Score: 66.6 bits (161), Expect = 1.090e-9
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 2 
Query:  116 QDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAGLLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLA 364
            QD+PPKGGF AIK  R+LP +GP G V+FG    I   G    G  N ++++ + EK  +RI LVPLL +E D++ +YR   A
Sbjct:    6 QDLPPKGGFEAIKFKRNLPTKGPGGAVIFGAVTAICAFGFWRVGLGNLEKRELQREKAWSRIHLVPLLLAESDRD-IYRREQA 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5689.13233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS9_ECTSI9.420e-1542.61NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A061QUA6_9CHLO9.080e-1439.52NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S1FYH9_9STRA1.600e-1344.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S3CKE5_9SPIT7.100e-1246.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A836C7G5_9STRA1.030e-1133.61NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
M5G820_DACPD1.410e-1141.94NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A4Q1BK48_TREME2.360e-1046.99NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A194SC06_RHOGW5.980e-1044.58NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A0C3MB32_9AGAM6.140e-1036.80NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A1Y2G200_9BASI1.090e-945.78NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5689contigH-paniculata_contig5689:685..6400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7FYS9
Preferred nameNDUFA13
KEGG koko:K11353,ko:K14009
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05165,map00190,map01100,map04141,map04714,map04723,map04932,map05010,map05012,map05016,map05165
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006355,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008104,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010257,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017038,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030308,GO:0030554,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032526,GO:0032553,GO:0032555,GO:0032559,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0035456,GO:0035458,GO:0035639,GO:0036094,GO:0040008,GO:0042176,GO:0042221,GO:0042773,GO:0042775,GO:0042886,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045271,GO:0045333,GO:0045732,GO:0045862,GO:0045892,GO:0045926,GO:0045934,GO:0046034,GO:0046483,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055085,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061024,GO:0061458,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070585,GO:0070727,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072521,GO:0072593,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097159,GO:0097190,GO:0097191,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990204,GO:1990542,GO:2000112,GO:2000113,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.cellular response to interferon-beta
EggNOG OGsKOG3300@1,KOG3300@2759
Ec32 ortholog descriptionGRIM-19
Ec32 orthologEc-19_002380.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons3
Model size1688
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5689.13233.1prot_H-paniculata_contig5689.13233.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5689 1895..6318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930609.5320213-UTR-H-paniculata_contig5689:684..18941622930609.5320213-UTR-H-paniculata_contig5689:684..1894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5689 685..1894 -
1691481370.8294199-UTR-H-paniculata_contig5689:684..18941691481370.8294199-UTR-H-paniculata_contig5689:684..1894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5689 685..1894 -
1622930609.5986805-UTR-H-paniculata_contig5689:6318..64001622930609.5986805-UTR-H-paniculata_contig5689:6318..6400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5689 6319..6400 -
1691481370.8824725-UTR-H-paniculata_contig5689:6318..64001691481370.8824725-UTR-H-paniculata_contig5689:6318..6400Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5689 6319..6400 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930609.5456748-CDS-H-paniculata_contig5689:1894..20501622930609.5456748-CDS-H-paniculata_contig5689:1894..2050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5689 1895..2050 -
1691481370.8439405-CDS-H-paniculata_contig5689:1894..20501691481370.8439405-CDS-H-paniculata_contig5689:1894..2050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5689 1895..2050 -
1622930609.5618389-CDS-H-paniculata_contig5689:3287..34611622930609.5618389-CDS-H-paniculata_contig5689:3287..3461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5689 3288..3461 -
1691481370.8569863-CDS-H-paniculata_contig5689:3287..34611691481370.8569863-CDS-H-paniculata_contig5689:3287..3461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5689 3288..3461 -
1622930609.5821579-CDS-H-paniculata_contig5689:6252..63181622930609.5821579-CDS-H-paniculata_contig5689:6252..6318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5689 6253..6318 -
1691481370.870659-CDS-H-paniculata_contig5689:6252..63181691481370.870659-CDS-H-paniculata_contig5689:6252..6318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5689 6253..6318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5689.13233.1

>prot_H-paniculata_contig5689.13233.1 ID=prot_H-paniculata_contig5689.13233.1|Name=mRNA_H-paniculata_contig5689.13233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MATPLNQGLPIQDVPPKGGFPAIKIARHLPNRGPHGWVMFGGCGLIMFAG
LLAFGNTNHKRQQAKLEKRLARIALVPLLQSEIDQEFVYRTHLAYKQKII
NSKNKFAEKVDLRGHLGPRLIGHDPKDFKSE*
back to top

mRNA from alignment at H-paniculata_contig5689:685..6400-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5689.13233.1 ID=mRNA_H-paniculata_contig5689.13233.1|Name=mRNA_H-paniculata_contig5689.13233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5716bp|location=Sequence derived from alignment at H-paniculata_contig5689:685..6400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCATAAAATCAATAAATTTTGTGCCAGCACCTCGCTTGCTTGACGAAGAG
AGCAACGAGCGAGCAGTGAGTTCAAGGTCAGCATGGCGACACCGCTTAAC
CAAGGCCTACCCATTCAGGATGTACCACCGAAGGGTGGATTCCCAGCGGT
GAGTGCTCCATTTGAAGTACTTTTCTCGCTTACATAGAAAATGTGGGGCA
GGACGTATGACATCAATTGCCGTCGTACACACCTTTTGATTCCACGACAA
TTCTTGTCTGTTGGCTTCCTCACCAAGTTTTATGTGTTTTGCCTCATCAC
TGCACAGGATGAACTGGCCAGAAATTGTCAGCGCTTCATCAAGACTAGAT
GTGAATGGAAGCGCTAGATGATGGCAACGTTGCTGTCACATGATTGTTGT
ATGTCCGAGTACGTGCGTAGGTGTTCTCTACCGTCGGAAACACGACAGTA
AGAAAACCTTTCTGTTAAATGAAGGGGGCATGCACATCAAAGGCGAACAT
TACAGACCAAAATGTAACGGGGACGGTGTGCGAAGCTGGGGCATGTGCCA
GTGATGCATTGCAGTCATGCAGTGCAGTTGATACGTTCTTCACAAAATCG
TGCCGTACATTTATCACGAATGTTATGGCAATGCTATGATGATTCAAGAA
TCCACCATAGACTCCATATTGGAAGGGCATGGGCATCATATCGAGTGCTT
GCCGCACTTACCAAGTATAAACAAAAATCACCCGCGCAAAATACACATAC
CTTACTGTACGGCAGTACCCTGAGTACATGTGTCATGAAAGACATGGGAA
GAATCAGCGCACATGGCCACCCTCTTAACGTGGTTTTAGCTGCTACATTA
ATACGCTCACCATTAGTTCAAGCCCTACTGCAGAAGCTCACAGCACGGAA
CGAAAGTAGGTGCAAATGGGTATTGTTCGCGTTCAAGTGGAACAAAATGT
AATTTGCACTTCATCACTGACTGTACTGTCTGTCTCCTTTCCCATCGACC
TAGTTAGGATATTTCGTGTATGTAGGGGATTGAATGTGTCGCATGCACGT
CTACCTTCTAGGTCTACGGTACTTTTGGAACTCTGCAGTTATTAAACATT
TCTACGCTAGTTCGCTCTCGTACGATAAAATCAAACCCTCATAGCCGAAT
CTTGGTTTAACCACGCTCACTTATCCTCTCGGATGTCTCGGGACTGTTCC
AAGTGTGGAGGCGTTGGTCATTTTCCAATCCGACAGTATCGCTTTCGGGT
ATCCCTCCTTACCTGGCCCGAAGTATGTTACCTTGGATGCATTAGCGTCC
TTAGTCACATGCACGAAAGTGGTTCGTCACCCCCCTCGACACAAATCGTC
TGATTATAACCTCACAAGCCGCGTAGCACGTTTATCGCATGATTCGTACG
AGGGACTTTCTCTGACCTATTGGTACCCGCCGTGGCCTTCTCAGACCCAA
TCGACTGGACGGCGTTACACAACTCTACCCCATTCCTGCTGTTCCTCCGC
ACGTTTTTTTAGTGCACAAGCAACGACAAGCACACGCGTCAGGATTGGGT
GTGAGTCGCGTTACCTGTTGCAGGTTGCACATAACTGATTGTCTGTGGTA
TGACTATTGTAACACTATGGCGTTCAGGTGTCGTGAGGTTGGACACGTCT
ATTGGACGCCCACTAATTTCATTGCCCCTAAGCCATTGTGTATGCCACAG
TCCATTTCACCTGTGTTCCTCTCGGGTGGATAATGTCGATACCGATAAAA
ATATGGACGAAGAAACCAAGCGCGGAAGCACAACCCCAGTCGTCTCTTAC
TGAGTGAAATTGCCGCGTTCAGCATTACCTGCCGAGAAAGACGTCATGAC
TGGATTGTCCATGCCACCCTGAGTCCTCCCACGTAGAAATTGGCGTATCA
GAGGGGGAAGGTAACCTGCGCATGGGCCTTGTAAGTTGGTGGGTGGTTCC
ATTCTCCTGAAACATGTTTGTGGCAGTATTCATCGGATGTCATGTTTGTA
AGAGTATCGTGTTAAAAAAAGCCATCATCGACACAGAATTCAGTATGTAC
GATACTGAAGAGCACGAAACCACTTGCCGGGGACACTATCGAGCATAGGT
GATCAGGTGGCAAAGTTCAACTTGTGCTAGAGCCGTCGACTTTTGTGCGA
GGGCGTGCAAAATGCTGGTGAGCAATTGGTCGTTCTTGGGAAGGTCACAG
TCAATCTCCGTTTGGGCTTGTTGCGTTTAAATCTGTATATGAACGGAAGA
TACTTCACCTCTCACTGTTGGCTGCATGTAAAACCCCCGCATTACCCTGT
TGTAAATGGGTTGGTGGGATCCATAAACACTGATTTTGCAAAGTGGCCTT
CGTTAAACAATTCAATTCCCCCTACCCCTACCGTAGGATGATTCGCGACC
AGGAGGGCAGATATGTGTGTCTAATGTGGCGTATGGCTATGCAAGATCGG
CCTTCCTTACAAAAAAAAACGCTATTTTTGCTTCAGGTCAAAACTGTATC
CGTCATTCTTCGTACTACTATTTTTGCATTTCCTGTGAGTGCGAACACCG
GTGTTTTACACACACGTTGAACAAGCTAAACTGATGAAGGTATCAATACA
CGATAGTCGAGGTTTAGTAGGGTTGTTTTCTCATAGCCGTGTCCTCTGAT
CACTTGCAGCGCTGCCGGTTATTGCAAATTGTGTCTTGAGTCTACTGGGC
AGTTGCAGTAAATATGTTTTTTAAGGCTCTCTCTGTTTGATTTCCTGCGA
GATGCGTGCACGGGCTACTGGGATACTCGAGACCTTTCGACCTTGAAGCT
ATGATAAGACGTGGTTCTGGTCACATATGCGGCTCGGGCGATCAAGGAAC
CAATTGCTTGATAACCTACTGCTCATTGGTCGTCGTTACTGTTATTTATT
TATTTATTTTTCCGTTGTGCGCTTGTCTATTTTGCGCAGATCAAGATCGC
GCGACATCTACCCAATCGGGGACCTCACGGCTGGGTCATGTTTGGTGGTT
GCGGCCTAATTATGTTTGCCGGTCTGCTAGCTTTCGGGAATACTAATCAC
AAGCGGCAACAAGCGAAACTGGAGAAGCGCTTAGCTCGTATTGCGCTGGT
GCCGCTGCTGCAGGTAAGGGAAGCCCTCTTGTCGACAGGTAGATATAGCG
AGATTTGGCTTTACCTAACTACTTTTTGTGGTGTGTAGGGTCTACCTCGA
TGTAGCCGTTCTCGGTTTATTCCTTTTATGATTTCAGTGAAGTTAGTTGT
GTTAGGCAGATGATACATCTAGATCTAAGACTATTCGAAGGTCGCGGTTA
GATTTGTTCGAAAGCTAAAGTTCGATAGTGTCGTATATGCTATTCCCAAG
TGCATTCCGATTTATGTAACATTTATGACGGCTCAAGGTTGGGCCATTTT
CAACCATTTTCCACCTTTTCGATGTTGAGTGTTTCGATTGGACAAATACC
GAAAGGGGCAATATGGTCTTCAGTTGGCCGACGTATTTTTTTGCGTCGCA
CGCGCTCCCGATTCATCTTGGTAATTTTCAGTGAAGTTTTGGGGATCAGC
CACCAAAACCTGTAGGATTCTAAATACTAAGAAATAAACGTGAGCTGGTT
ATGCGCCTCTTGAAAGTCAATCGGCCTCACTAGTGCACAGATGAAATAGT
ACGAAGGATTTACGGCTCTCAACGCTAGAATTTGTTGCTCTCGTTAAGCG
ATTTTATGGTGCTGGCCTGGACTCGTGCAACATCGGGAACGAGCGCATCG
TGGCATTTCATGATGGGTACAGACTTAAAGGTGTCTCGTCATGATCCAAC
GGATGGTAACCCCATGTATATTTTCAAATCTGTATCGTCGTGTCTTTCTG
CACAAGACGGAACTCGAAAATGAAAAGATCTTGGAGGATGAGGGTTGATA
GCTAAGAGCTAAAGAGCATCATGTTAATCCGCGGTTCTTTGATCTCTGCT
GCGTACAGAGAAAGTTGTATGCGAAGTGGCGTCGTTGGTCCGGTCATCGG
TCGTGTTTCTTGTATTCTGTAAGTCGTTCGTAGGGCATTTGTACTATTCG
GTTAAACCGTTCTCTGTGAAAGGTATCTTGACCAGGTTGTTGTGCCACAC
AAGACGTAGCTCTCACATAACGCCGGCGTATAGTCCAGAAATCGGCGACA
TTTTTCCATCCATGTCAGTTCAAAAAAAAAAAGGAGCAAATTGGTTCACC
CTTGACCGTGCACAAGTTTTTTGGCTTGCCCGATGCTACCCAATGTATTA
GCGCTTGCGTGATCTAACTGCCCTAGTTATTTCCTTGGAATTTGAGGTAT
ATTTCTAATCAACGCGAATATTTGCTGCTTTGGGTCGTTTTCTGTTGCAG
TCGGAGATTGACCAAGAATTCGTCTACAGGACCCACTTGGCCTATAAGCA
AAAGATCATCAACAGCAAGAACAAGTTTGCAGAAAAGGTGGACCTCAGAG
GTCACCTAGGTCCCCGACTCATTGGCCACGACCCCAAGGATTTCAAGTCT
GAGTAGGCAGTGTCACTTGTCTGTGTCTCCGATGAAACTGTCATTTGCCG
GGGGAGAGGACGATCGCGTATTGGGGACAGAAACCTTGACAACTGCCCCT
ATAACCAAAGCATGGCGTGGACGGGACCCATTGGAATGAGGGAGCTCATC
CTGACGGGATCTTAGATTTATTCTTGAAAAAGAGGGTCTAGCGATTGCTT
CCCAGAACTGACTATACTTGGCTTGACCCCCCAATGACGCACGCCAATAG
GCAAGAACTTTTAGAATACACTCAAGCCTCCCCAAGGAGCTGGCAAGTCA
GATGGTGGCAGTCTTATCGCGTCGGCTCACCGTCGCGGATAACATTATTT
ATCTGGTCCTGGCAGGAATCATGTGTGGGGGCGGGGCGGATGATGGGGGT
CTGGCAAAATGCGGCACGGGCAGTTTGTGTACTTTGTTTGACACAATACA
CGGAATTAAATTTCTCGGTTGGAGGGAATCCCCGTTTGAGTGTTAGTGTT
CGGTGAGGAGGGTTTCTCGACGCTACACCAGCCGTCTGTACTTGAATGCG
ATTCCTTTCGTCACAGGAGTTCGACTAGGGTTCAGAGGGATTATTTGTGG
TAGGGAAATTGTGAAAGTAGCGTATACTTTCGTCTCTTCGAATGTTGACA
TTAGTGGCCAGCACTCATGAGGATGCTGGTGAGTCTTTAAGGTAATGGGA
ATGGCAGTGACGGAGGGTGCGCGGTGCGTACAGCATGGGAAGATTGAACC
TCGACTGGGTCGAACATGGACCCTGACATGCGCAACGCAGGCGACGGTAT
GAGATGTTTTGTTTTTGCATGCAGCATCGTGTGCCCCCAGGAAGTAGGCG
GAGGGCTACCTTTGTAGAGCTCTACATTTTGGATTCGAATGGAACGTTTG
GTGTTGTCGTACCTAATATCAGGACCAAAAGCGAGGTGGAATCCTTGAAT
GTCCTTGTAACGAACGGCTCGATCGTCGTAACGGTATTGTGGAGTGCCGT
AGACTCCATACACGTAAACGAAACTTGTTGCGCATAGTGTATTAGTTGAT
TATTGATTGTTCCTTGACCCCTGCCGCTTCATGTGTTCGATACATCAGTG
CCCAATTTCGTGGCGCAACGTACTCGTGGGTGTCGGTGCCCTTCAACTTC
TGAAATCCGCTGACGAGCGAGGATATGGTAAAAAAAGAGTTATACTATTA
GTAACATCATACATAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5689:685..6400-

>mRNA_H-paniculata_contig5689.13233.1 ID=mRNA_H-paniculata_contig5689.13233.1|Name=mRNA_H-paniculata_contig5689.13233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig5689:685..6400- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACACCGCTTAACCAAGGCCTACCCATTCAGGATGTACCACCGAA
GGGTGGATTCCCAGCGATGGCGACACCGCTTAACCAAGGCCTACCCATTC
AGGATGTACCACCGAAGGGTGGATTCCCAGCGATCAAGATCGCGCGACAT
CTACCCAATCGGGGACCTCACGGCTGGGTCATGTTTGGTGGTTGCGGCCT
AATTATGTTTGCCGGTCTGCTAGCTTTCGGGAATACTAATCACAAGCGGC
AACAAGCGAAACTGGAGAAGCGCTTAGCTCGTATTGCGCTGGTGCCGCTG
CTGCAGATCAAGATCGCGCGACATCTACCCAATCGGGGACCTCACGGCTG
GGTCATGTTTGGTGGTTGCGGCCTAATTATGTTTGCCGGTCTGCTAGCTT
TCGGGAATACTAATCACAAGCGGCAACAAGCGAAACTGGAGAAGCGCTTA
GCTCGTATTGCGCTGGTGCCGCTGCTGCAGTCGGAGATTGACCAAGAATT
CGTCTACAGGACCCACTTGGCCTATAAGCAAAAGATCATCAACAGCAAGA
ACAAGTTTGCAGAAAAGGTGGACCTCAGAGGTCACCTAGGTCCCCGACTC
ATTGGCCACGACCCCAAGGATTTCAAGTCTGAGTAGTCGGAGATTGACCA
AGAATTCGTCTACAGGACCCACTTGGCCTATAAGCAAAAGATCATCAACA
GCAAGAACAAGTTTGCAGAAAAGGTGGACCTCAGAGGTCACCTAGGTCCC
CGACTCATTGGCCACGACCCCAAGGATTTCAAGTCTGAGTAG
back to top