mRNA_H-paniculata_contig56745.13213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56745.13213.1
Unique NamemRNA_H-paniculata_contig56745.13213.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56745.13213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56745contigH-paniculata_contig56745:128..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.2835557-CDS-H-paniculata_contig56745:127..6431622930607.2835557-CDS-H-paniculata_contig56745:127..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56745 128..643 -
1691481369.8808246-CDS-H-paniculata_contig56745:127..6431691481369.8808246-CDS-H-paniculata_contig56745:127..643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56745 128..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56745.13213.1prot_H-paniculata_contig56745.13213.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56745 128..643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56745.13213.1

>prot_H-paniculata_contig56745.13213.1 ID=prot_H-paniculata_contig56745.13213.1|Name=mRNA_H-paniculata_contig56745.13213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=172bp
KRVRNAQKSWIMLIMTCKGMALKIVPSDESPSEAWRKLQKHYRASGLKEK
SRLLREFNSLRMKPGEESTKFLLRVDRVANDFERLGKTVDEDDRNLAIVN
GLSPEYEIERRMIESSDDTPNRARIEMVIANQYNRLQQQKAKTAAKALVV
TMKGTTETYHLCHKLGHCGIK*
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mRNA from alignment at H-paniculata_contig56745:128..643-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56745.13213.1 ID=mRNA_H-paniculata_contig56745.13213.1|Name=mRNA_H-paniculata_contig56745.13213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at H-paniculata_contig56745:128..643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGGGTGCGGAACGCGCAAAAATCGTGGATCATGCTAATCATGACCTG
CAAAGGCATGGCGTTGAAGATCGTCCCGAGCGACGAGTCGCCGAGTGAGG
CGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTAAAAGAGAAG
TCACGTCTGCTGCGCGAATTTAACTCCCTCAGGATGAAGCCCGGGGAAGA
ATCCACAAAATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACTTCGAGC
GGCTTGGGAAGACTGTCGACGAAGATGACAGGAATCTGGCGATAGTGAAC
GGGCTATCACCAGAGTATGAGATTGAGAGGAGAATGATCGAGAGCAGCGA
TGACACGCCAAATAGAGCGCGCATCGAAATGGTCATCGCAAACCAGTATA
ACAGGCTTCAGCAGCAGAAAGCCAAGACCGCAGCAAAGGCACTGGTGGTC
ACGATGAAAGGTACAACGGAAACATACCACTTGTGCCACAAGCTTGGGCA
CTGTGGAATAAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig56745:128..643-

>mRNA_H-paniculata_contig56745.13213.1 ID=mRNA_H-paniculata_contig56745.13213.1|Name=mRNA_H-paniculata_contig56745.13213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig56745:128..643- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGGGTGCGGAACGCGCAAAAATCGTGGATCATGCTAATCATGACCTG
CAAAGGCATGGCGTTGAAGATCGTCCCGAGCGACGAGTCGCCGAGTGAGG
CGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAGCGGCCTAAAAGAGAAG
TCACGTCTGCTGCGCGAATTTAACTCCCTCAGGATGAAGCCCGGGGAAGA
ATCCACAAAATTCCTTTTGCGGGTGGACCGGGTCGCCAATGACTTCGAGC
GGCTTGGGAAGACTGTCGACGAAGATGACAGGAATCTGGCGATAGTGAAC
GGGCTATCACCAGAGTATGAGATTGAGAGGAGAATGATCGAGAGCAGCGA
TGACACGCCAAATAGAGCGCGCATCGAAATGGTCATCGCAAACCAGTATA
ACAGGCTTCAGCAGCAGAAAGCCAAGACCGCAGCAAAGGCACTGGTGGTC
ACGATGAAAGGTACAACGGAAACATACCACTTGTGCCACAAGCTTGGGCA
CTGTGGAATAAAGTAGAAGAGGGTGCGGAACGCGCAAAAATCGTGGATCA
TGCTAATCATGACCTGCAAAGGCATGGCGTTGAAGATCGTCCCGAGCGAC
GAGTCGCCGAGTGAGGCGTGGAGGAAGCTCCAAAAGCACTACCGCGCTAG
CGGCCTAAAAGAGAAGTCACGTCTGCTGCGCGAATTTAACTCCCTCAGGA
TGAAGCCCGGGGAAGAATCCACAAAATTCCTTTTGCGGGTGGACCGGGTC
GCCAATGACTTCGAGCGGCTTGGGAAGACTGTCGACGAAGATGACAGGAA
TCTGGCGATAGTGAACGGGCTATCACCAGAGTATGAGATTGAGAGGAGAA
TGATCGAGAGCAGCGATGACACGCCAAATAGAGCGCGCATCGAAATGGTC
ATCGCAAACCAGTATAACAGGCTTCAGCAGCAGAAAGCCAAGACCGCAGC
AAAGGCACTGGTGGTCACGATGAAAGGTACAACGGAAACATACCACTTGT
GCCACAAGCTTGGGCACTGTGGAATAAAGTAG
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