mRNA_H-paniculata_contig56572.13185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56572.13185.1
Unique NamemRNA_H-paniculata_contig56572.13185.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56572.13185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56572contigH-paniculata_contig56572:203..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930603.9256437-CDS-H-paniculata_contig56572:202..5321622930603.9256437-CDS-H-paniculata_contig56572:202..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56572 203..532 +
1691481368.2622418-CDS-H-paniculata_contig56572:202..5321691481368.2622418-CDS-H-paniculata_contig56572:202..532Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56572 203..532 +
1622930603.9968812-CDS-H-paniculata_contig56572:755..7941622930603.9968812-CDS-H-paniculata_contig56572:755..794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56572 756..794 +
1691481368.2737582-CDS-H-paniculata_contig56572:755..7941691481368.2737582-CDS-H-paniculata_contig56572:755..794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56572 756..794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56572.13185.1prot_H-paniculata_contig56572.13185.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56572 203..794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56572.13185.1

>prot_H-paniculata_contig56572.13185.1 ID=prot_H-paniculata_contig56572.13185.1|Name=mRNA_H-paniculata_contig56572.13185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=123bp
AECGLEGKGYRIEIPRTWVKKSVPFAKALLVVPSITLKSISGLSILIEHI
ARADEQSLGKVFSSIMEDAAETLIDEACSAGEERLDEVRATGENLEQSTV
ADGQGVGSSNASPLAVPMETLEQ
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mRNA from alignment at H-paniculata_contig56572:203..796+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56572.13185.1 ID=mRNA_H-paniculata_contig56572.13185.1|Name=mRNA_H-paniculata_contig56572.13185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=594bp|location=Sequence derived from alignment at H-paniculata_contig56572:203..796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAATGTGGGCTTGAAGGAAAGGGATACCGGATAGAGATTCCGCGAAC
GTGGGTGAAAAAGAGTGTCCCGTTCGCCAAGGCCCTGCTGGTCGTCCCAA
GTATCACGCTGAAGAGCATCTCAGGGTTGAGCATTCTCATTGAACATATC
GCACGTGCAGATGAACAATCGTTGGGCAAAGTCTTCTCATCGATAATGGA
GGATGCGGCAGAAACATTGATAGACGAAGCTTGCTCCGCTGGGGAAGAGC
GCCTCGATGAAGTACGGGCGACAGGGGAAAATCTGGAACAGAGCACCGTC
GCGGATGGTCAAGGCGTGGGTAGTTCGAATGTAAGTGGCCCTGTATGCGA
TAAGTGTTGCATGCAGCGATTGCGCATTCAGCGAAACAAATGCTTCCCCC
GATACAATAGTTGTAACTTGATGCACTCGGCAGTAACCCTAGCTGCATGT
AAGATACATTTCCACCACCACACTGTGGAGTCTGAATGCTCTACCTTAAC
CCAACTGCCATGCGTCTCCGACCACGACATTGGTGTAATCAATTCCCCCA
TAGGCTAGCCCATTGGCCGTGCCAATGGAAACGTTGGAGCAACT
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Coding sequence (CDS) from alignment at H-paniculata_contig56572:203..796+

>mRNA_H-paniculata_contig56572.13185.1 ID=mRNA_H-paniculata_contig56572.13185.1|Name=mRNA_H-paniculata_contig56572.13185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at H-paniculata_contig56572:203..796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGAATGTGGGCTTGAAGGAAAGGGATACCGGATAGAGATTCCGCGAAC
GTGGGTGAAAAAGAGTGTCCCGTTCGCCAAGGCCCTGCTGGTCGTCCCAA
GTATCACGCTGAAGAGCATCTCAGGGTTGAGCATTCTCATTGAACATATC
GCACGTGCAGATGAACAATCGTTGGGCAAAGTCTTCTCATCGATAATGGA
GGATGCGGCAGAAACATTGATAGACGAAGCTTGCTCCGCTGGGGAAGAGC
GCCTCGATGAAGTACGGGCGACAGGGGAAAATCTGGAACAGAGCACCGTC
GCGGATGGTCAAGGCGTGGGTAGTTCGAATGCAGAATGTGGGCTTGAAGG
AAAGGGATACCGGATAGAGATTCCGCGAACGTGGGTGAAAAAGAGTGTCC
CGTTCGCCAAGGCCCTGCTGGTCGTCCCAAGTATCACGCTGAAGAGCATC
TCAGGGTTGAGCATTCTCATTGAACATATCGCACGTGCAGATGAACAATC
GTTGGGCAAAGTCTTCTCATCGATAATGGAGGATGCGGCAGAAACATTGA
TAGACGAAGCTTGCTCCGCTGGGGAAGAGCGCCTCGATGAAGTACGGGCG
ACAGGGGAAAATCTGGAACAGAGCACCGTCGCGGATGGTCAAGGCGTGGG
TAGTTCGAATGCTAGCCCATTGGCCGTGCCAATGGAAACGTTGGAGCAAG
CTAGCCCATTGGCCGTGCCAATGGAAACGTTGGAGCAA
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