prot_H-paniculata_contig56509.13181.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig56509.13181.1
Unique Nameprot_H-paniculata_contig56509.13181.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length50
Homology
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A2U1PLA0_ARTAN (Ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PLA0_ARTAN)

HSP 1 Score: 53.5 bits (127), Expect = 6.100e-7
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    1 MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQ 46
            MGNVVK+K+RLVA G  + Q +DY+EVFAP      ++ +LA+A Q
Sbjct:  352 MGNVVKYKARLVAKGYVQKQGVDYDEVFAPVARLDTIRLILALAAQ 397          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A699LUL4_TANCI (Retrotransposon protein, putative, unclassified (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699LUL4_TANCI)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-6
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0
Query:    1 MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQ 46
            MGNV+K+K+RL+A G  + Q +DY+EVFAP      ++ +L++A Q
Sbjct:  293 MGNVIKYKARLIAKGYVQKQGVDYDEVFAPVARLDTIRVILSLAAQ 338          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6J4L7Z3_9CYAN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=uncultured Leptolyngbya sp. TaxID=332963 RepID=A0A6J4L7Z3_9CYAN)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-6
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:    1 MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            +GN+ ++K+RLVA G  + + IDY EVFAP    A ++T+LA+   EDL+
Sbjct:  165 LGNIERYKARLVAKGFMQKEGIDYNEVFAPVSKHATLRTLLALVAAEDLE 214          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: UPI0003F4A63A (uncharacterized protein n=1 Tax=Tremella mesenterica (strain ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL Y-6157 / RJB 2259-6 / UBC 559-6) TaxID=578456 RepID=UPI0003F4A63A)

HSP 1 Score: 52.0 bits (123), Expect = 2.130e-6
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 GNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            GN++K+KSRLVA G ++   +DYEE FAP   + +++ +L +A  EDL+
Sbjct:  400 GNLLKYKSRLVAQGFSQVPGVDYEETFAPVGRSGSLRILLTIAATEDLE 448          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A535EX56_9CHLR (DDE-type integrase/transposase/recombinase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535EX56_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 2.140e-6
Identity = 22/50 (44.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            +GN+++FK+RLVA G ++   +DY + FAP    AA++ +LA+A  EDL+
Sbjct:  902 LGNIIRFKARLVARGFSQVFGVDYLDTFAPVAKLAAIRILLAIATVEDLE 951          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: UPI0003F4999C (uncharacterized protein n=1 Tax=Tremella mesenterica (strain ATCC 24925 / CBS 8224 / DSM 1558 / NBRC 9311 / NRRL Y-6157 / RJB 2259-6 / UBC 559-6) TaxID=578456 RepID=UPI0003F4999C)

HSP 1 Score: 51.6 bits (122), Expect = 2.920e-6
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    2 GNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            GN++K+KSRLVA G ++   +DYEE FAP   + +++ +L +A  EDL+
Sbjct:  210 GNLLKYKSRLVAQGFSQIPGVDYEETFAPVGRSGSLRILLTIAATEDLE 258          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 2.930e-6
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    2 GNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            G V K+K+RLVA G ++  +IDY E FAP     +V+T+LA+A  EDL+
Sbjct:  835 GEVSKYKARLVAKGYSQRAEIDYSETFAPVVRYESVRTLLAIAADEDLE 883          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A0C3PIV1_PISTI (Uncharacterized protein (Fragment) n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3PIV1_PISTI)

HSP 1 Score: 51.2 bits (121), Expect = 4.010e-6
Identity = 22/49 (44.90%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    2 GNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            GNVV++K+RLVA G ++ + IDY + FAP  + A+++ VLA+A + +L+
Sbjct:  865 GNVVRYKARLVAQGFSQVEGIDYFDTFAPVATLASIRVVLAMAARSNLE 913          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A6G1EYS5_9ORYZ (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EYS5_9ORYZ)

HSP 1 Score: 49.7 bits (117), Expect = 4.360e-6
Identity = 23/47 (48.94%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    2 GNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQED 48
            G++VK K++LVA G      +D+EEVFAP     +V+T+LAVA  ED
Sbjct:   46 GHIVKHKAQLVAKGYVHQHGVDFEEVFAPVAWLESVRTILAVAADED 92          
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Match: A0A085N6C0_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085N6C0_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 5.500e-6
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 0
Query:    2 GNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ 50
            G V ++K+RLVA G T+  +IDY E FAP     +++TVLA+A  EDL+
Sbjct:  937 GGVDRYKARLVAKGFTQRPEIDYFETFAPVARYDSIRTVLAIAADEDLE 985          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56509.13181.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2U1PLA0_ARTAN6.100e-752.17Ribonuclease H-like domain, Reverse transcriptase,... [more]
A0A699LUL4_TANCI2.130e-645.65Retrotransposon protein, putative, unclassified (F... [more]
A0A6J4L7Z3_9CYAN2.130e-646.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0003F4A63A2.130e-644.90uncharacterized protein n=1 Tax=Tremella mesenteri... [more]
A0A535EX56_9CHLR2.140e-644.00DDE-type integrase/transposase/recombinase (Fragme... [more]
UPI0003F4999C2.920e-644.90uncharacterized protein n=1 Tax=Tremella mesenteri... [more]
A0A0V1MB43_9BILA2.930e-648.98Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C3PIV1_PISTI4.010e-644.90Uncharacterized protein (Fragment) n=1 Tax=Pisolit... [more]
A0A6G1EYS5_9ORYZ4.360e-648.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A085N6C0_9BILA5.500e-648.98Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..48
e-value: 1.4E-8
score: 34.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56509contigH-paniculata_contig56509:871..1020 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56509.13181.1mRNA_H-paniculata_contig56509.13181.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig56509 679..1020 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig56509.13181.1 ID=prot_H-paniculata_contig56509.13181.1|Name=mRNA_H-paniculata_contig56509.13181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MGNVVKFKSRLVADGRTRTQDIDYEEVFAPTPSAAAVKTVLAVAVQEDLQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2