mRNA_H-paniculata_contig5639.13167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5639.13167.1
Unique NamemRNA_H-paniculata_contig5639.13167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 562 bits (1448), Expect = 3.530e-189
Identity = 321/612 (52.45%), Postives = 410/612 (66.99%), Query Frame = 2 
Query:  116 LVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLADVTKALLLFSSTKSGH------GLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCLDKMCISVPRGGRECSPHLLVNNGDLVRAFAAGMVSMRKVHEGATTICESQ------STSINSQGGGAEHAQRSEPNQGDVPQ-----KDTRQKQNA---IRGEDVAYGEGSLHRQGNHDASSAVSRYYGDLSREYPGAISMLVDDLMNFLFASESS-----ASGAFKRLPLPIV---CITVQVLSGETIVPLLVHRFVNGMPMLDTNTSSACALVVGV-SKSGWRGLGLKISTSRVHHREGRLRFVLSEAPTPLKVKGGAAWSALANVSAVHVSLSVQSENVPYTNLRKDAIAHKEGYVSATASAVGEGLASLANREQGGFRSAAKAAKEMMEQDFIPLMASSIAAMVEGSGDVSFQRKCLDVLGVGSEYAHQKRLQNVIQHELRQTIRE 1864
            ++QTVKELVDNA+D+CR R  +QD PTV+VVLRR     A +       +G+  ++   ++ LELQV DNGAGL DVTKAL LFSSTKSGH       +    +AG NAGKYGLG+TLSLLYSQ  FGGF+K  + T+ STQ+SFT+C IDL+TG P  VY K+G KP  WA GCGTD+RLLVPG E+ALD+A PRL+  F RMHLL DR AGV+  CEGCLD M + VPRGGR+ SPHLL++N DLV+AFA G+ +M K ++      E+       + S+  Q  G+ H+  +     D PQ     +  RQ Q+      G  +      + R    D+S         L+  +PG +    +D+  F    ++S     A+ A +R P P       T Q   GET VPL VHRF NG+PMLDTNTS+ACALV GV SK  WR LGLKIS++RV  REGRLRFVLSEAPTPLKV GGA WSALA++ AVHV+++  S+ VP+T+LRKDAIAHKEGYVSA  SAV +GL SL+NRE GGFRSAA+AAK+MM++D IPL ASS+A+MV  S + +FQ+KCL  LGVG EY  ++RL ++++ EL++ IR+
Sbjct:    5 ILQTVKELVDNAIDSCRCRTSEQDAPTVRVVLRRAAAGAAVA-------EGVGEDLDLEEEPLELQVADNGAGLTDVTKALGLFSSTKSGHTPPVAPDVSSSGAAGKNAGKYGLGLTLSLLYSQKHFGGFLKATTATMESTQWSFTKCDIDLETGTPRTVYRKSGLKPDSWARGCGTDMRLLVPGDEEALDFAAPRLKAFFTRMHLLPDRPAGVSFACEGCLDNMSVCVPRGGRDASPHLLLDNQDLVQAFAKGLSAMAKANKAPIGTLETPPXXXATTASLGGQSEGSPHSNDTLDRDTDQPQGQHHLQQQRQSQSCGGQREGSSIGSASQGIQRLEEADSSGXXXXXXSSLAPSFPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAP-PTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQ 608
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A6H5JUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 7.770e-19
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 2 
Query:  122 QTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLADVTKALLLFSSTKSGH 388
            QTVKELVDNA+D+CR R  +QD PTV+VVLRR       S+      +G+  ++   ++ LELQV DNGAGL DVTKA+ LFSSTKSGH
Sbjct:   27 QTVKELVDNAIDSCRCRASEQDAPTVRVVLRR-------SAAGATVAEGVVEDLDLDEEPLELQVADNGAGLTDVTKAVGLFSSTKSGH 108
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A7C4SQK7_9CREN (Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Desulfurococcaceae archaeon TaxID=2184738 RepID=A0A7C4SQK7_9CREN)

HSP 1 Score: 90.9 bits (224), Expect = 2.250e-15
Identity = 76/262 (29.01%), Postives = 130/262 (49.62%), Query Frame = 2 
Query:   53 SVIHHFIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEI-PERDDRLELQVTDNGAGLA--DVTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCL---DKMCISVPRGGRECSPH 814
            S    F +N E++GF +P  A+ QTV+ELV+NA+DA    G+    P +KV                     IE ++ PER D   + V DNG G+   ++ +A   LL+SS    + L Q        G +GLG  +++LY Q+T G  ++V+S+T+NS++  F +  ID+K  +P +++  +  K + W    GT ++L + G  +    AKP++     R  ++   A+ +  +    +   ++    +PR  RE  PH
Sbjct:   11 SAAEFFYRNKEIAGFSNPARAIYQTVRELVENALDATDSHGIL---PVIKVA--------------------IESDVMPERPDVYLISVEDNGIGIPPDNIPQAFAQLLYSSK---YVLRQ------TRGMFGLGAKMAVLYGQLTTGKPVEVVSSTINSSRIYFFKLAIDVKENKPIVLHRASFKKESDWH---GTIVKLFIEGDWNR---AKPKVYEYLKRTAIIAPYASIIFKDPSNNVIYFERSTTLMPRPPREVKPH 234
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A7C4PY35_9CREN (Type 2 DNA topoisomerase 6 subunit B n=3 Tax=Thermoprotei TaxID=183924 RepID=A0A7C4PY35_9CREN)

HSP 1 Score: 86.3 bits (212), Expect = 6.570e-14
Identity = 63/199 (31.66%), Postives = 107/199 (53.77%), Query Frame = 2 
Query:   68 FIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLA--DVTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPG 652
            F +N E++GF +P  AL Q+++ELV+NA+DA    G+    P +KV +                D GI   IP++ +   + V DNG G+   ++ +A   LL+SS    + L Q        G +G+G+ +++LYSQ+T G  ++V+S+T+NS++    R  ID+K  +P I +  +  K + W    GT ++L + G
Sbjct:   16 FYRNKEIAGFSNPARALYQSIRELVENALDATDSYGIL---PVIKVSI----------------DSGI---IPDKPEVYLISVEDNGIGIPPDNIPQAFAQLLYSSK---YVLRQ------TRGMFGIGVKMAVLYSQITTGKPVEVLSSTINSSRIYMFRLSIDIKNNRPVIHHKASFKKSSEWH---GTIVKLFIEG 180
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: V4JR01_9CREN (Type 2 DNA topoisomerase 6 subunit B n=8 Tax=Acidilobus TaxID=105850 RepID=V4JR01_9CREN)

HSP 1 Score: 83.6 bits (205), Expect = 5.220e-13
Identity = 83/261 (31.80%), Postives = 117/261 (44.83%), Query Frame = 2 
Query:   53 SVIHHFIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLADVTKAL----LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAG--VTLECE-GCLDKMCISVPRGGRECSPH 814
            SV   F +N EL+GF +P  AL QTV+ELV+NA+DA    G+  D   +KV +R V P                 E  +R  R E+ V DNG G+     A     +LFSS    + + Q        G YGLG+    LY+Q T G  + V+S+  NS    + + RID+K  +P +       K + W    GT +  LV G       AKP++     R  ++   A    VT E E     +    +P+  RE  PH
Sbjct:   17 SVAEFFSKNKELAGFSNPTRALYQTVRELVENALDATDSHGILPD---IKVHIREVEP-----------------ETEDRPARYEVTVEDNGIGVPKTVMAQAFGKVLFSSK---YAIRQ------TRGMYGLGVKAVTLYAQTTTGRPMFVVSSQENSEYVYYQKVRIDVKRNEPLVAEDGQFLKRSSWH---GTVVSALVEGDWQR---AKPKIIEYIRRTAVVAPYAEIWLVTPENEIYFFPRATKKMPKPPREAKPH 242
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: D9PZY9_ACIS3 (Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15) TaxID=666510 RepID=D9PZY9_ACIS3)

HSP 1 Score: 83.2 bits (204), Expect = 6.910e-13
Identity = 81/261 (31.03%), Postives = 117/261 (44.83%), Query Frame = 2 
Query:   53 SVIHHFIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLADVTKAL----LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCL---DKMCISVPRGGRECSPH 814
            SV   F +N EL+GF +P  AL QTV+ELV+NA+DA    G+    P VK+ ++ V P                 E  ER  R E+ V DNG G+     A     +LFSS    + + Q        G YGLG+   +LYSQ T G  I V+S+  +S    +   +ID+K  +P +V      K + W    GT    +V G       AKP++     R  ++   A    +  EG +    +    +P+  RE  PH
Sbjct:   18 SVAEFFSKNKELAGFSNPTRALYQTVRELVENALDATDSHGIL---PEVKIYIKEVEP-----------------ENEERPARYEVSVEDNGIGVPKTVMAQAFGKVLFSSK---YVIRQ------TRGMYGLGVKAVVLYSQTTTGRPITVVSSQEDSNFVYYQNIKIDIKKNEPMVVEDGQLDKRSSWH---GTIASAIVEGDWTR---AKPKIIEYVRRTAIIAPYAELWLVTPEGEIYFFPRATKKMPKPPREAKPH 243
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A662UC82_9CREN (Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662UC82_9CREN)

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 77/258 (29.84%), Postives = 121/258 (46.90%), Query Frame = 2 
Query:   68 FIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLAD--VTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPG-----REDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCLDKMCISVPRGGRECSPH 814
            F +N E++GF +P  AL QTV+ELV+NA+DA    G+    P +KV ++R              D G E     +D+   + V DNG G+    +  A   LL+SS    + L Q        G +GLG  +++LY QVT G  ++V+S  +NS +  + + RID+K  +P I+     +K   W    GT +++ + G     +    +Y + R   +     L+F    G  +  E   +KM    P   RE  PH
Sbjct:   19 FYRNKEIAGFSNPSRALYQTVRELVENALDATDAHGIL---PVIKVSIKR--------------DGGHE-----KDNIFSVTVEDNGIGIPPNHIPSAFGQLLYSSK---YILRQ------TRGMFGLGAKMAVLYGQVTTGKPVEVISAPINSRKIYYFKLRIDIKNNKPIILEKAQYSKTNDWH---GTIVKVYLEGDWSRSKSKIYEYLR-RTAVIAPYAELVFSDPEGNIVYFERSTNKM----PPPPREVKPH 237
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A256Z466_9CREN (Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Desulfurococcales archaeon ex4484_42 TaxID=2012520 RepID=A0A256Z466_9CREN)

HSP 1 Score: 81.3 bits (199), Expect = 2.550e-12
Identity = 76/258 (29.46%), Postives = 124/258 (48.06%), Query Frame = 2 
Query:   68 FIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLAD--VTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPG-----REDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCLDKMCISVPRGGRECSPH 814
            F +N E++GF +P  AL QTV+ELV+NA+DA    G+    P +++V+RR       S T   + +GI            + V DNG G+    V +A   LL+SS    + L Q        G +GLG  +++LY Q+T G  ++V+++ +NS +  + + RID+K  +P ++   +  K   W    GT ++L + G     R    +Y + R   +     +LF+   G  +  E    KM    P   +E  PH
Sbjct:   18 FYRNREIAGFSNPVRALYQTVRELVENALDATDAHGIL---PNIRIVIRR------ESGT---SKEGI----------YSIMVEDNGIGIPPNHVPQAFGQLLYSSK---YVLRQ------TRGMFGLGAKMAVLYGQITTGKAVEVVTSPINSVRTYYFKLRIDIKHNKPIVLKKASYPKINGWH---GTIVKLYIEGDWSRARSKIYEYLR-RTAIIAPYAEILFEDPDGNVIFFERRTTKM----PSPPKEVKPH 236
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A833EEQ4_9CREN (Type 2 DNA topoisomerase 6 subunit B n=4 Tax=Pyrodictiaceae TaxID=2307 RepID=A0A833EEQ4_9CREN)

HSP 1 Score: 80.9 bits (198), Expect = 3.460e-12
Identity = 67/256 (26.17%), Postives = 124/256 (48.44%), Query Frame = 2 
Query:   68 FIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLAD--VTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLECEGCL---DKMCISVPRGGRECSPH 814
            F +  E++GF +P  +L QTV+ELV+NA+DA     +K D   + +V+ RVP +                       +  + V DNG G++   V  A   +LFSS    + L Q      + G++GLG+ +++LY Q+T G  ++V ++ + S +  + + +ID++  +P I+   + +K  +W    GT + + + G       A+ R+     R  ++   A    ++ +G +    ++   VPRG +E  PH
Sbjct:   22 FYEYKEIAGFSNPARSLYQTVRELVENALDATDVYSIKPD---ISIVIERVPGTN----------------------QYRITVEDNGIGISPDYVPNAFGQVLFSSK---YKLRQ------SRGRFGLGVKMAVLYGQITTGKPVEVYTSPIGSKRIYYFKIKIDIEKNKPIILEKASWSKRGNWH---GTRVTVTIVGDWSR---ARSRVHEYIRRTAIVAPYARITMVDPDGNIVYYPRVVDKVPRGPKEAKPH 237
[Close]
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Match: A0A7J3Y098_9CREN (Type 2 DNA topoisomerase 6 subunit B n=2 Tax=Thermogladius TaxID=477695 RepID=A0A7J3Y098_9CREN)

HSP 1 Score: 77.8 bits (190), Expect = 3.210e-11
Identity = 79/256 (30.86%), Postives = 119/256 (46.48%), Query Frame = 2 
Query:   68 FIQNFELSGFGSPGEALVQTVKELVDNAMDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDRLELQVTDNGAGLAD--VTKAL--LLFSSTKSGHGLEQGTSAGPNAGKYGLGMTLSLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKPAHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGV--TLECEGCLDKMCISV-PRGGRECSPH 814
            F +  E++GF +P  AL QTV+ELV+NA+DA    G+  D   VK+V++R  P Q                     +   + V DNG G+    V  A   +LFSS    + L+Q        G YGLG+ +++LY Q+T G  I+V+++     +  F + RID+   +P ++   +  K   W    GT + L + G       AK R++    R  ++   A  V  T + E  L K  I V PR  RE  PH
Sbjct:   18 FYKYKEIAGFANPARALYQTVRELVENALDATDSHGILPD---VKIVIQRADPVQ---------------------EFYRVTVEDNGIGIPPDIVPNAFGRVLFSSK---YVLKQ------TRGMYGLGVKMAVLYGQMTTGRPIEVITSKREYRRIYFFKIRIDINKNEPIVLERGSWRKQRDWH---GTIVSLTIEGDWGK---AKARIKEYVNRTAIVTPYANIVMYTPDNEVVLYKRVIDVMPRPPREVKPH 234
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5639.13167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM1_ECTSI3.530e-18952.45Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
A0A6H5JUR8_9PHAE7.770e-1957.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C4SQK7_9CREN2.250e-1529.01Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Desul... [more]
A0A7C4PY35_9CREN6.570e-1431.66Type 2 DNA topoisomerase 6 subunit B n=3 Tax=Therm... [more]
V4JR01_9CREN5.220e-1331.80Type 2 DNA topoisomerase 6 subunit B n=8 Tax=Acidi... [more]
D9PZY9_ACIS36.910e-1331.03Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Acidi... [more]
A0A662UC82_9CREN1.100e-1229.84Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Therm... [more]
A0A256Z466_9CREN2.550e-1229.46Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Desul... [more]
A0A833EEQ4_9CREN3.460e-1226.17Type 2 DNA topoisomerase 6 subunit B n=4 Tax=Pyrod... [more]
A0A7J3Y098_9CREN3.210e-1130.86Type 2 DNA topoisomerase 6 subunit B n=2 Tax=Therm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5639contigH-paniculata_contig5639:1547..9985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score549.3
Seed ortholog evalue2.3e-153
Seed eggNOG ortholog2880.D7FMM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase-like ATPases
EggNOG OGs2E55C@1,2SBZP@2759
Ec32 ortholog descriptionHistidine kinase-like ATPase, C-terminal domain
Ec32 orthologEc-23_000850.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons14
Model size2232
Cds size1824
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5639.13167.1prot_H-paniculata_contig5639.13167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5639 1804..9225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.7388604-UTR-H-paniculata_contig5639:1546..18031622930600.7388604-UTR-H-paniculata_contig5639:1546..1803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 1547..1803 -
1691481366.533134-UTR-H-paniculata_contig5639:1546..18031691481366.533134-UTR-H-paniculata_contig5639:1546..1803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 1547..1803 -
1622930601.0096447-UTR-H-paniculata_contig5639:9225..92551622930601.0096447-UTR-H-paniculata_contig5639:9225..9255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 9226..9255 -
1691481366.7030776-UTR-H-paniculata_contig5639:9225..92551691481366.7030776-UTR-H-paniculata_contig5639:9225..9255Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 9226..9255 -
1622930601.0235603-UTR-H-paniculata_contig5639:9864..99851622930601.0235603-UTR-H-paniculata_contig5639:9864..9985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 9865..9985 -
1691481366.7164257-UTR-H-paniculata_contig5639:9864..99851691481366.7164257-UTR-H-paniculata_contig5639:9864..9985Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5639 9865..9985 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.7576962-CDS-H-paniculata_contig5639:1803..19981622930600.7576962-CDS-H-paniculata_contig5639:1803..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 1804..1998 -
1691481366.5435343-CDS-H-paniculata_contig5639:1803..19981691481366.5435343-CDS-H-paniculata_contig5639:1803..1998Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 1804..1998 -
1622930600.7754037-CDS-H-paniculata_contig5639:2280..23641622930600.7754037-CDS-H-paniculata_contig5639:2280..2364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 2281..2364 -
1691481366.5520062-CDS-H-paniculata_contig5639:2280..23641691481366.5520062-CDS-H-paniculata_contig5639:2280..2364Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 2281..2364 -
1622930600.7899737-CDS-H-paniculata_contig5639:2650..27641622930600.7899737-CDS-H-paniculata_contig5639:2650..2764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 2651..2764 -
1691481366.5600033-CDS-H-paniculata_contig5639:2650..27641691481366.5600033-CDS-H-paniculata_contig5639:2650..2764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 2651..2764 -
1622930600.8130846-CDS-H-paniculata_contig5639:3017..31401622930600.8130846-CDS-H-paniculata_contig5639:3017..3140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 3018..3140 -
1691481366.5707567-CDS-H-paniculata_contig5639:3017..31401691481366.5707567-CDS-H-paniculata_contig5639:3017..3140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 3018..3140 -
1622930600.8393295-CDS-H-paniculata_contig5639:3331..36521622930600.8393295-CDS-H-paniculata_contig5639:3331..3652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 3332..3652 -
1691481366.5825956-CDS-H-paniculata_contig5639:3331..36521691481366.5825956-CDS-H-paniculata_contig5639:3331..3652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 3332..3652 -
1622930600.857733-CDS-H-paniculata_contig5639:4385..44841622930600.857733-CDS-H-paniculata_contig5639:4385..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 4386..4484 -
1691481366.6013756-CDS-H-paniculata_contig5639:4385..44841691481366.6013756-CDS-H-paniculata_contig5639:4385..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 4386..4484 -
1622930600.8756993-CDS-H-paniculata_contig5639:5616..57991622930600.8756993-CDS-H-paniculata_contig5639:5616..5799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 5617..5799 -
1691481366.6149879-CDS-H-paniculata_contig5639:5616..57991691481366.6149879-CDS-H-paniculata_contig5639:5616..5799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 5617..5799 -
1622930600.889796-CDS-H-paniculata_contig5639:6090..61921622930600.889796-CDS-H-paniculata_contig5639:6090..6192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 6091..6192 -
1691481366.6274164-CDS-H-paniculata_contig5639:6090..61921691481366.6274164-CDS-H-paniculata_contig5639:6090..6192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 6091..6192 -
1622930600.9031925-CDS-H-paniculata_contig5639:6833..69691622930600.9031925-CDS-H-paniculata_contig5639:6833..6969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 6834..6969 -
1691481366.638674-CDS-H-paniculata_contig5639:6833..69691691481366.638674-CDS-H-paniculata_contig5639:6833..6969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 6834..6969 -
1622930600.940826-CDS-H-paniculata_contig5639:7191..73161622930600.940826-CDS-H-paniculata_contig5639:7191..7316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 7192..7316 -
1691481366.6488302-CDS-H-paniculata_contig5639:7191..73161691481366.6488302-CDS-H-paniculata_contig5639:7191..7316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 7192..7316 -
1622930600.9590645-CDS-H-paniculata_contig5639:7609..77011622930600.9590645-CDS-H-paniculata_contig5639:7609..7701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 7610..7701 -
1691481366.664441-CDS-H-paniculata_contig5639:7609..77011691481366.664441-CDS-H-paniculata_contig5639:7609..7701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 7610..7701 -
1622930600.9754722-CDS-H-paniculata_contig5639:8152..82661622930600.9754722-CDS-H-paniculata_contig5639:8152..8266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 8153..8266 -
1691481366.6769722-CDS-H-paniculata_contig5639:8152..82661691481366.6769722-CDS-H-paniculata_contig5639:8152..8266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 8153..8266 -
1622930600.99375-CDS-H-paniculata_contig5639:9089..92251622930600.99375-CDS-H-paniculata_contig5639:9089..9225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 9090..9225 -
1691481366.6883202-CDS-H-paniculata_contig5639:9089..92251691481366.6883202-CDS-H-paniculata_contig5639:9089..9225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5639 9090..9225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5639.13167.1

>prot_H-paniculata_contig5639.13167.1 ID=prot_H-paniculata_contig5639.13167.1|Name=mRNA_H-paniculata_contig5639.13167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=608bp
MDACRWRGMKQDPPTVKVVLRRVPPSQASSSTPCNTDDGIEMEIPERDDR
LELQVTDNGAGLADVTKALLLFSSTKSGHGLEQGTSAGPNAGKYGLGMTL
SLLYSQVTFGGFIKVMSTTVNSTQYSFTRCRIDLKTGQPAIVYSKTGAKP
AHWAEGCGTDIRLLVPGREDALDYAKPRLQTLFGRMHLLFDRAAGVTLEC
EGCLDKMCISVPRGGRECSPHLLVNNGDLVRAFAAGMVSMRKVHEGATTI
CESQSTSINSQGGGAEHAQRSEPNQGDVPQKDTRQKQNAIRGEDVAYGEG
SLHRQGNHDASSAVSRYYGDLSREYPGAISMLVDDLMNFLFASESSASGA
FKRLPLPIVCITVQVLSGETIVPLLVHRFVNGMPMLDTNTSSACALVVGV
SKSGWRGLGLKISTSRVHHREGRLRFVLSEAPTPLKVKGGAAWSALANVS
AVHVSLSVQSENVPYTNLRKDAIAHKEGYVSATASAVGEGLASLANREQG
GFRSAAKAAKEMMEQDFIPLMASSIAAMVEGSGDVSFQRKCLDVLGVGSE
YAHQKRLQNVIQHELRQTIREMEENRARGKALAAERRAIETHEEREMDSR
KRPSSQS*
back to top

mRNA from alignment at H-paniculata_contig5639:1547..9985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5639.13167.1 ID=mRNA_H-paniculata_contig5639.13167.1|Name=mRNA_H-paniculata_contig5639.13167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8439bp|location=Sequence derived from alignment at H-paniculata_contig5639:1547..9985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGAGGCGTAGCGTATGTGCTGGTACCGCTACCAGTAGCACAGCTAGCA
GCAGTGTTATCCATCACTTCATACAGAATTTCGAACTCAGTGGCTTCGGG
TCTCCGGGGGAAGCCCTCGTGGTAAGTTGCAGGTGTTGGTTGACCAGTCA
AACAGAGTAATCACGACGAGTCGGATGCAGAGAGATAGGCTGGACGTGGG
AAGAGACTAGACCCTGACGGTACTTACGACTTAGGTTGCCCAAGGCTTTG
GTACCAAATTGAGCAGGATCCGGTGCGTGCAGCCTGGGATAGGCAAACGA
CCAGACAAGGGTCGAAACAAAAAATTGAAAGTAGACTCACTTGTTTTATT
ATGGGAGGACGGGATCTGCGTGCATGTATTATTTGATTCTCGAGGATGGA
TGCATGTCATTTGGTCGCTCTGTGCACAGCATGAATGCAACAGAGGATCA
TGCCCCGTCCTGCAATGTCCACTCTATCGAATTTCGATATGCTGGGCCAC
GTCTGACTGCCGAGCCAGGGAACAACGTGGTCAGATTAAGGTGGCACTTC
GTCCATTATCAGCCCTCGATTTTTTTACAGGCCGGAACATGTCTCGAAGG
CCATTCATTGTCCAGGAGGGTGTATATCCTAGGGTTGAATGGACCCGACC
ACACAGCTACTCCGAAATACACTCTCTCCTCACCCCTTTGCCACCCTCTG
GTTGAACTCAACTCGTTATGATCCATGCAGCAAACTGTGAAAGAACTGGT
AGACAACGCAATGGACGCTTGCCGGTGGAGAGGAATGAAACAAGACCCCC
CTACAGTCAAGGTGGTATTACGTCGAGTGCCTCCTTCCCAAGCTTCTTCG
TCCACCCCATGCAACACTGACGACGGAATAGAAATGGAAATACCCGGTGA
GACGGACGCGTACGCTATATACACGACTGCTATCAACGAATCACCTTCAT
ATTCCTTTGATAACTACAAGTTGGGTACGTTGCTGTGAACTGAGCATGAA
ATGCCATCGCTCTGAACGAGGTTCTGCTCAGGGCCCTGCCAAACCAGCAA
GCCCGATTTTCTATCCCGATTTTTATCTGAGGGTTTGTATACGGCAACCA
TCGCATTTCAAACTGTCGGACTAAGATCATGAAGCGGAAAAATAGGCTCG
TTTGGCACGGCCCTGATTGTATAATTGCCAAATACTGCAGCCGAAGAGAA
GTTGAAAACTAATGAAAACGACGGAGAGTTCAAGCTAAGGGTAATTCCTA
GCAGGCGCCATCTTTAGCGGGAAAACGTTTTTTTTCCAATCTCAAGATGT
TTGACCTCCTAAAAAAAAGCCAAAATTTATCAATCAGAACTACCATCAGT
TGCTTTCGTCAAGTATTTCTAGAAGTACGGAAAAGGTCATATTTTTTTAG
GGAATTTTGGCTTTGATTTGAGCGCTCGAAATCTAATAATTGGCAAATTT
CCGTTTCTCCGTAAAAAACCGCTAGGAATGACGTTAAGAATTGAATGTGG
AGTCTGCAATTGTCAGAAGGCAATAATAATAATAATTGAATGTGGATGCG
TACGTGCTTCCATCTCGCTATGGATATTACAACATGCGCGTGCTAGTGTT
ATTCCATGGCTTACCTGAGGGTCAGTCATCCTGTATGCCAAGGGTTTCCT
TCCTCTTTCTCGCTGCATCGTAATTTCAATATTTCTCGTTTGGCGCGAAT
GGAACGAGCATTCGAACAGAGAGGGACGATCGCTTGGAACTCCAAGTTAC
GGACAATGGGGCTGGCTTGGCCGACGTGACTAAGGCTTTGCTCCTCTTTT
CCTCAACCAAGTCAGGGCACGGACTAGAACAAGGTTAAATGCAAATGATC
TTGTAGGCGAGGATTGATGTGTATGCTACGGGCAGTTGTATTTGTTAGCA
CTAATCCGCGGCTCGGTTAGGAGTACGTGGGCGCAGAGTGCACTCAAAAT
GTACGGTTTGGGCCTGCCGACGTAGTTCACAAGTGTCCGCCCTTTTTACT
CAGTACCCAGGACTACGTTTGTTGGAGTTGTTTAAAGCCGCGCTTAACTT
CAGTTCTCTTGGGGAAACGTTTGCAACTTGGTTAGGAACAACCGCAGGAG
AGCAACCAGGAAATGCGGAACCACCCAATGTAACGACTGCAAGCGAAAAC
AAAGTGTGCCGGCCTGCCTAATCAGACTCGTTGATCACTCGACAGCGCTG
TGAGCATGGCACTTCTCCAAATTTTCTTGATCTGGTGCTCGCCATCGTAC
CTATCTACGCATGCCATGCTGGTAAATCTCACAGGAACAAGCGCGGGCCC
AAACGCCGGTAAATACGGGCTGGGAATGACGCTCTCTCTACTCTATTCAC
AGGTTACCTTTGGGGGTTTCATCAAGGTGCGCTGGCAGCATGCCCTTTGC
CTGCCTATTTTTTCATTGTGGTAATATATATAGTTCCCTGTCGTTGGTAT
TGCACCTGTCCACCCTGCTTTTGGGCTTGATCATCAGAAAGCACGACACC
ATGAGCAGCAGAAGATTGGGACAATATACCAGTAACCACAGTTGCGTTCT
ACATGCCCACGTGTGATGATAGCTTCCCCCGCAAATTATGGTAAAATGCA
AGGGGTGTGCCAAGTGAACAGATGCGAGCTTTATGGCGTATGATGCCGCG
TATATAATGAACGTGTTAGGTGATGTCGACAACAGTCAACTCTACCCAGT
ATTCCTTCACAAGGTGCCGCATCGATCTCAAGACGGGGCAGCCCGCTATT
GTCTACAGCAAAACTGGCGCAAAGCCTGCTCACTGGGCTGAGGGGTGAGA
AAACGTTCACAGATAATATTCATGACATGTAGGGTTTTTCTTTTTGAACG
CTTGTAGGTTGCCTGCATGTTACATCAAAGTCACTTTCCAAATCTTGTCT
CCTGCACGTCCACGACGATTCGTCTTTGCGTGGAAGTTCGTGTGCTGTGA
TGATCTGAATGATATTTTGAGCACGTTAGAGGCCTATTGTCCCCGTTTCT
CTCTTATACGTTAAAGGTGCGGCACCGACATTCGCCTATTGGTTCCCGGC
CGCGAGGACGCGTTGGATTATGCCAAACCAAGATTGCAGACTCTGTTCGG
GCGCATGCACCTTTTATTCGATAGGGCAGCTGGTGTCACATTGGAGTGTG
AGGTCAGTTCTTCGAGCTCGTGGGTATGTACAGCTAGTGCCGCTATCGAA
ACATATGGGAAACGAGGCAGACGCGGTGAACTCCACACGCTTGGAGACCG
TTTATTTCGAAGAAATGTAGACATAAAACGTTATTGGAGTACTTCGAAGT
CGCTGCAGGCCCTTCAGGGTGAATTATACGATAGCACCGTCCAACTGGGT
GATGACTTTGCGCCCACACATGGGTGCTCGCATATTTCTTTGATGTACAT
GGAGAAAAGAAAGCTGCTTAATGGCAGGGGACAAGGGATGGATATCATTC
GTGCGTCTCTTCCCATCTGAATCAGGTGGTCATTATCCAGCCCCGATTGG
GTGTAAAGTCCAGCGTTAGAAAAGTATCCTTGAATGGCGATTTGAATCAC
CGAGAGCAGAAGGCAGGAGACAGACGATGAAAGCTAGTCAGGGCCGATTT
CCTACACCCGCCAACCAGTACCCGAACGAATCAACGACCCTTTCATGGTA
TCCGATATACGATGTACGTCAGATTTCTGTTTTATTTTTATATCCCAAGC
AAACAGAGTGCAACCTATCCATTCACGTATTCCATGTCGCAGTAATATCC
CTATATGCTGTCTTGTTAAATAATGGATATCTTCCTTTGATAGGGATGTC
TCGACAAAATGTGCATCTCGGTACCTCGAGGAGGCAGAGAATGTTCGCCC
CATCTTTTGGTGAACAACGGAGATCTGGTGCGAGCGTTCGCCGCGGTAAG
TGATGTGTGGTGACGTTTGTTGCTTACGGGAAAAAGAGGATGCGTGACGA
GTTGCTTCGCATTCACTCATTGTCATTGATTGCACTAGACGTACAAGTGC
GATTGTGACCTCCTAATGCTCCCGCCTCATGGTTCGAAGTAATGTTTATG
CTCTTCTTGAGCCCTATCCATAAATAGCGGACATGACAAGTCGTTTTATG
TAGAGGCGACGATGGTTCCACCTGAGTATACCATCATTCCCTTTACCACA
GGATGATACATGCTCTGTTCCTCGTGCCTCGTGTAGGGGATGGTGTCTAT
GCGTAAGGTCCACGAAGGCGCAACCACCATATGTGAGAGTCAATCAACAA
GCATCAACAGCCAAGGTGGAGGTGCGGAGCATGCGCAGAGGTCTGAGCCT
AACCAAGGCGATGTCCCCCAAAAGGACACACGCCAGAAACAGAACGCGAT
CCGAGGAGAAGATGTCGCAGTGTTCGAGTGCGAGGCAAGCCATTCCACCT
AATCTATTTGAGCGGGCGGTTGGCGGTGGGTACATCGGTTGTTGTGATCA
CGATATAATATAAAAGCCCTGAAGAAAAAGCTCACTGCTGACTCTGTGGT
CTCATGTTAGATATCGCATGCTGTAAGTCAGTCCTCTATCATCCAGTTCG
GCGGATCTGGGATAGCGGGGCTGTGTCACATCAGTTCACAGCGTTTCAGG
AGCAACAGTCTACGGCCCTTCTCTACCGTTGTTTCGACTGTGACATTGCG
GTATTTATATGCAGGCAAAGAGTGGCACGAGGGTTTCAGCGGCGATCACC
TTAGAGCGGCCATCCCGAACAACGGCGAAGGACGATGCTTATCATCAGGT
ATGGAAGATGTTATGTTATCAAGAGCGGAGGTCTTACCCCAGACACGCAA
ATGATTCTACTCACAGAGGTATACTTTAGCATATGCGACGGACTGGTAGA
AACCAACCAAGACACACCTCTTCGCTGGCAGTTCCTCCGCCAGCCTTATC
ACGTGTAGAGCGTGAGAGTCCTCACATTATTTGACATCACTCATGGGCGC
CCACGAGTCCTAATAGGTCAGTGCACGGGAACCCATGGAAAACCCATGGA
AAACCCATGGGCAACCATCCGTGACCCATGGGTCACGATCTATAAGTGCT
AATGGACAACCACGGAATGGGTGACTGAGGGCGTCCACGATTGCTCGTGG
GTGCCCATGAATTGTTCACAGGTCACCATGGACACCAATATGGGTCGCCA
TGGCAACCCACGGGATTCGCTAAATATTAAAAAGTGGAAGTTTAGATCCA
TGGATTTTGTCCACGGCGATTCACGGCGACCCATATCACACCGTGGTTAC
CCATCATTGTTTATGAAACCGACATCGCCGTAGGTCAGCTGTAACCCCAT
CGTTGGTTACCTATGGTTTATGATAGAGCAAGAGGTCCGCTTGCAATCCA
CGCACACGTATCCGATACGCAAAATAAGTTATCGAGGGGAAGGTCTCTCC
CGAAGCGATCGTTGTTCGTGTAAGTGGAGTGGCTCTTAGGTGCACCTAAG
AGGCTGACGACGGTTCCTTGGAAGCGAGTACTTTCGAAAGTATCATGAGA
GTATGGTGAGGGGTCATTACACCGCCAAGGAAATCACGACGCTTCCAGTG
CAGTTTCGAGATATTACGGTGATTTGTCGCGAGAATACCCTGGGGCGATC
GTAATATCGCCACCGATTTCGTCGATAACTACGTTGGTCGTGTCACCGAA
TGTATCAGTGTAAATAAGACATCGCACAACACAGTTCGTGCCAGCAGCAA
CGTAATTGTACTGAAGTTCGAAATTGCAACAAAGATCGCTCAAGTGCGTT
CTCTCGACGCAGTTCAATACATTCGTCGTCTAAAACCGACGACTTTTATA
TCGTTTGTGAGTTTGAAAAGCTGTGTTGATCACGCAGGGGTGTACACGCA
CCCTTAATAGGCTTATGCTGTAACATCAATTTTCGCTACTCCTATTCTGC
ACGCTGCGATTATCAACGCGTGACCCGCTTGTTTGACGCTGCCCCATCTT
ACCTCTCAAGAGTTACGTTATATGGATTTCTTCAACGATAAGCGGTGCAT
CATTCTGTGAGGATTACCGCATCGACGACTGGCAAACACAGGCAGCACAA
TAAACCAAGTGACAATCTCCCCAACTTTCATTTTTTGGTAGACCGCGATA
AACTATGCGGTAATATATTGCACTTTCTCTTTCGCCGTCTCACAGTTCGC
CTCATCAGATTCGATCCTCATTGACCATTCATAATCACCTGTGGTGGCCC
TTGGAACGGCGATTTATGCGTTGGCCCATGGGTTGACCCATGGGTTGCCG
TGAGTTGACCAGGGAGGACCAGTGGGCGCTCATGAGCGAGTATGGGTACC
CATGAGTCACGTCAACTAATGTAAATCCCTGAGAGCATGCTGGTCGACGA
TTTAATGAATTTCTTGTTCGCCTCCGAAAGTAGTGCATCTGGGGCATTCA
AGCGCTTGCCCCTGCCTATCGTATGTATTACTGTTCAGGTCTTATCTGGG
GAGACAATTGTTCCCCTCTTGGTTCACCGATTTGTCAATGGGATGCCCAT
GTTGGACACGAACACGTCTTCGGCTTGTGCTTTAGTCGTGGGGGTATCCA
AATCTGGGTGGAGAGGTCTAGGGCTCAAGATTTCCACGTCGAGGGTACAT
CACAGAGAGGGCAGGCTTAGGTTCGTGCTTTCTGAGGCACCCACTCCACT
CAAGGTGAAGATATGCCTATTACGATCAGCATTTTCCCTTTTGGCGCTAT
CCTCCCCATCCATTTCCATCCTAGATCAGCTCCTGCCTTAGTTGCCTCTA
GTTGGTGCATCCCACGCGTGACGCGACATCTTTGTACCCGTGTCAGACGC
TGCGGAGGGCGAGTAATCTGTCACACTCTGATTTATGTTTGTCAGGTGAA
GGGCGGTGCGGCATGGTCCGCCCTGGCAAACGTCTCTGCGGTGCATGTGT
CACTGTCGGTACAATCGGAGAACGTGCCTTACACCAACCTCAGAAAGGAC
GCCATCGCCCATAAAGAGGTAGGCTCACGTGGTGTGGATACATCACCGTA
CTGCCAATCAATGCTTCCATTCAATTCGGCTAGTGCTTGTGATCGAAGTC
GACTCAACGCAAGCAACGTTTAGTAGGTTTCCCATGCCTTTCCATTGTAA
TCTTGTGGACATGCTATTGCTGCGTCGCACAGCTCTTTCCCGATGATTCG
CGGAAGGTTCATCAGGCTGCAATACGATATTATGTTCAACACGCACCTGC
TCCGCTTGATTTGATATTTAGGGGTACGTCTCTGCCACGGCTAGCGCAGT
TGGGGAAGGGTTAGCATCTCTCGCCAATCGTGAACAGGGGGGTTTCCGTT
CCGCAGCTAAAGCCGCTAAAGAAATGATGGAACAGGTGGGGCGCCTTTAA
ACTAAGTGCAGTTAACTATCTCGTAATTGAAAAGCCCGCTTCTCCACCAA
GCAGCCGTTTTCCATAAAAATACAGCAAACGAAAAGAGTAGGTAGGCGAA
TCCCCGTCAGTGGAACAATAGTTGACGACCCTGAAATACAGCCGGCTACT
TTTCGTTGTCTATCGTGTAGTCCCGAGAGATCTGCTGCAATTTTATGGGT
ACCCACAGAGGAGAGGAGCCACTCCTAACTTCATGATGTTCAATATATAT
TATCTTGGTTTTCCCTCACAGGATTTCATTCCCTTGATGGCCTCGAGCAT
AGCAGCAATGGTGGAGGGCAGTGGAGACGTATCTTTCCAGAGGAAATGCC
TGGACGTGAGTGCAGAAGGACGCTTGGTTCAAAATCAGGCCATTTAAGCC
ATGGAATTCTGCCAACGAATCGCGGGGATGTATCGTAACATGTATCGGGA
AGGGTGAAGTTCCACGGCAACATGCACCATGGTTTATTTGAGAAATGTAT
GCCATGGAATAGTTTTGACTATCTTGGCTGCCTATGGTAGGTCAATGTTT
TATCTCAAATCACTCATCGTGTACCAACGCGATCCCATTCTTCCATCGAT
CGTTCGTGTTTTTGAACATGAACATGAACGACCTCAGGTTCTAGGCGTTG
GGAGTGAGTACGCTCACCAAAAGCGCCTTCAAAACGTGATTCAGCACGAG
CTGAGGCAGACCATACGTGAAATGGAAGAGAACCGAGCTCGGGGCAAAGC
ACTAGCCGCTGAACGCAGAGCAATAGAAACTCATGAAGAGCGTGAAATGG
ATTCTAGGAAACGACCAAGCTCTCAGTCATGAGGTGCACTTCTTCAGTTT
TGTTTATTTTGTTTCGCCAGAGAGCTGTATTTGCATGTGTTTAGAGTTAC
AAGTGTCTGTTGTTTTATGTTCAGTTGGGGCGATGTTATGTTGCTACAGC
AGAGGTTTCTTGGGCTCCCGCCACACGCATGGAAGAGACCGCGAGGGAAA
GAGCAGAACTAATCAGCAACGGACGCGATGGTTGGGCTAGGTATTCATTC
CACGGCGGGCCGCAGTCAGAAAAATAAGTAACTCCTCTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5639:1547..9985-

>mRNA_H-paniculata_contig5639.13167.1 ID=mRNA_H-paniculata_contig5639.13167.1|Name=mRNA_H-paniculata_contig5639.13167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3648bp|location=Sequence derived from alignment at H-paniculata_contig5639:1547..9985- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGCTTGCCGGTGGAGAGGAATGAAACAAGACCCCCCTACAGTCAA
GGTGGTATTACGTCGAGTGCCTCCTTCCCAAGCTTCTTCGTCCACCCCAT
GCAACACTGACGACGGAATAGAAATGGAAATACCCGATGGACGCTTGCCG
GTGGAGAGGAATGAAACAAGACCCCCCTACAGTCAAGGTGGTATTACGTC
GAGTGCCTCCTTCCCAAGCTTCTTCGTCCACCCCATGCAACACTGACGAC
GGAATAGAAATGGAAATACCCGAGAGGGACGATCGCTTGGAACTCCAAGT
TACGGACAATGGGGCTGGCTTGGCCGACGTGACTAAGGCTTTGCTCCTCT
TTTCCTCAACCAAGTCAGGGCACGGACTAGAACAAGAGAGGGACGATCGC
TTGGAACTCCAAGTTACGGACAATGGGGCTGGCTTGGCCGACGTGACTAA
GGCTTTGCTCCTCTTTTCCTCAACCAAGTCAGGGCACGGACTAGAACAAG
GAACAAGCGCGGGCCCAAACGCCGGTAAATACGGGCTGGGAATGACGCTC
TCTCTACTCTATTCACAGGTTACCTTTGGGGGTTTCATCAAGGAACAAGC
GCGGGCCCAAACGCCGGTAAATACGGGCTGGGAATGACGCTCTCTCTACT
CTATTCACAGGTTACCTTTGGGGGTTTCATCAAGGTGATGTCGACAACAG
TCAACTCTACCCAGTATTCCTTCACAAGGTGCCGCATCGATCTCAAGACG
GGGCAGCCCGCTATTGTCTACAGCAAAACTGGCGCAAAGCCTGCTCACTG
GGCTGAGGGGTGATGTCGACAACAGTCAACTCTACCCAGTATTCCTTCAC
AAGGTGCCGCATCGATCTCAAGACGGGGCAGCCCGCTATTGTCTACAGCA
AAACTGGCGCAAAGCCTGCTCACTGGGCTGAGGGGTGCGGCACCGACATT
CGCCTATTGGTTCCCGGCCGCGAGGACGCGTTGGATTATGCCAAACCAAG
ATTGCAGACTCTGTTCGGGCGCATGCACCTTTTATTCGATAGGGCAGCTG
GTGTCACATTGGAGTGTGAGGTGCGGCACCGACATTCGCCTATTGGTTCC
CGGCCGCGAGGACGCGTTGGATTATGCCAAACCAAGATTGCAGACTCTGT
TCGGGCGCATGCACCTTTTATTCGATAGGGCAGCTGGTGTCACATTGGAG
TGTGAGGGATGTCTCGACAAAATGTGCATCTCGGTACCTCGAGGAGGCAG
AGAATGTTCGCCCCATCTTTTGGTGAACAACGGAGATCTGGTGCGAGCGT
TCGCCGCGGGATGTCTCGACAAAATGTGCATCTCGGTACCTCGAGGAGGC
AGAGAATGTTCGCCCCATCTTTTGGTGAACAACGGAGATCTGGTGCGAGC
GTTCGCCGCGGGGATGGTGTCTATGCGTAAGGTCCACGAAGGCGCAACCA
CCATATGTGAGAGTCAATCAACAAGCATCAACAGCCAAGGTGGAGGTGCG
GAGCATGCGCAGAGGTCTGAGCCTAACCAAGGCGATGTCCCCCAAAAGGA
CACACGCCAGAAACAGAACGCGATCCGAGGAGAAGATGTCGCAGGGATGG
TGTCTATGCGTAAGGTCCACGAAGGCGCAACCACCATATGTGAGAGTCAA
TCAACAAGCATCAACAGCCAAGGTGGAGGTGCGGAGCATGCGCAGAGGTC
TGAGCCTAACCAAGGCGATGTCCCCCAAAAGGACACACGCCAGAAACAGA
ACGCGATCCGAGGAGAAGATGTCGCATATGGTGAGGGGTCATTACACCGC
CAAGGAAATCACGACGCTTCCAGTGCAGTTTCGAGATATTACGGTGATTT
GTCGCGAGAATACCCTGGGGCGATCTATGGTGAGGGGTCATTACACCGCC
AAGGAAATCACGACGCTTCCAGTGCAGTTTCGAGATATTACGGTGATTTG
TCGCGAGAATACCCTGGGGCGATCAGCATGCTGGTCGACGATTTAATGAA
TTTCTTGTTCGCCTCCGAAAGTAGTGCATCTGGGGCATTCAAGCGCTTGC
CCCTGCCTATCGTATGTATTACTGTTCAGGTCTTATCTGGGGAGACAATT
GTTCCCCTCTTGGTTCACCGATTTGTCAATGGGATGCCCATGTTGGACAC
GAACACGTCTTCGGCTTGTGCTTTAGTCGTGGGGGTATCCAAATCTGGGT
GGAGAGGTCTAGGGCTCAAGATTTCCACGTCGAGGGTACATCACAGAGAG
GGCAGGCTTAGGTTCGTGCTTTCTGAGGCACCCACTCCACTCAAGAGCAT
GCTGGTCGACGATTTAATGAATTTCTTGTTCGCCTCCGAAAGTAGTGCAT
CTGGGGCATTCAAGCGCTTGCCCCTGCCTATCGTATGTATTACTGTTCAG
GTCTTATCTGGGGAGACAATTGTTCCCCTCTTGGTTCACCGATTTGTCAA
TGGGATGCCCATGTTGGACACGAACACGTCTTCGGCTTGTGCTTTAGTCG
TGGGGGTATCCAAATCTGGGTGGAGAGGTCTAGGGCTCAAGATTTCCACG
TCGAGGGTACATCACAGAGAGGGCAGGCTTAGGTTCGTGCTTTCTGAGGC
ACCCACTCCACTCAAGGTGAAGGGCGGTGCGGCATGGTCCGCCCTGGCAA
ACGTCTCTGCGGTGCATGTGTCACTGTCGGTACAATCGGAGAACGTGCCT
TACACCAACCTCAGAAAGGACGCCATCGCCCATAAAGAGGTGAAGGGCGG
TGCGGCATGGTCCGCCCTGGCAAACGTCTCTGCGGTGCATGTGTCACTGT
CGGTACAATCGGAGAACGTGCCTTACACCAACCTCAGAAAGGACGCCATC
GCCCATAAAGAGGGGTACGTCTCTGCCACGGCTAGCGCAGTTGGGGAAGG
GTTAGCATCTCTCGCCAATCGTGAACAGGGGGGTTTCCGTTCCGCAGCTA
AAGCCGCTAAAGAAATGATGGAACAGGGGTACGTCTCTGCCACGGCTAGC
GCAGTTGGGGAAGGGTTAGCATCTCTCGCCAATCGTGAACAGGGGGGTTT
CCGTTCCGCAGCTAAAGCCGCTAAAGAAATGATGGAACAGGATTTCATTC
CCTTGATGGCCTCGAGCATAGCAGCAATGGTGGAGGGCAGTGGAGACGTA
TCTTTCCAGAGGAAATGCCTGGACGATTTCATTCCCTTGATGGCCTCGAG
CATAGCAGCAATGGTGGAGGGCAGTGGAGACGTATCTTTCCAGAGGAAAT
GCCTGGACGTTCTAGGCGTTGGGAGTGAGTACGCTCACCAAAAGCGCCTT
CAAAACGTGATTCAGCACGAGCTGAGGCAGACCATACGTGAAATGGAAGA
GAACCGAGCTCGGGGCAAAGCACTAGCCGCTGAACGCAGAGCAATAGAAA
CTCATGAAGAGCGTGAAATGGATTCTAGGAAACGACCAAGCTCTCAGTCA
TGAGTTCTAGGCGTTGGGAGTGAGTACGCTCACCAAAAGCGCCTTCAAAA
CGTGATTCAGCACGAGCTGAGGCAGACCATACGTGAAATGGAAGAGAACC
GAGCTCGGGGCAAAGCACTAGCCGCTGAACGCAGAGCAATAGAAACTCAT
GAAGAGCGTGAAATGGATTCTAGGAAACGACCAAGCTCTCAGTCATGA
back to top