prot_H-paniculata_contig56350.13163.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig56350.13163.1
Unique Name	prot_H-paniculata_contig56350.13163.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	96

Homology

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6G0JTE1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JTE1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.010e-13
Identity = 35/81 (43.21%), Postives = 55/81 (67.90%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMA 84
            V+ +++K+E L   K+FE D+  A G +I+RL SD GGEYTG+ F+++ ++ G + E +   TPQ+NG+AE    S+ EMA
Sbjct:   79 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMA 159

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A151QP37_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QP37_CAJCA)

HSP 1 Score: 72.8 bits (177), Expect = 6.660e-13
Identity = 35/85 (41.18%), Postives = 58/85 (68.24%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASM 88
            V+ L++KSE     K+F+ +V + NGL I+ L SD+GGE+T K F+++C +NG +++ +   +PQ+NGVAE    +I EMA + +
Sbjct:  495 VYFLKEKSEVFENFKKFKDNVEKENGLLIKALRSDRGGEFTSKEFQKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSML 579

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6G0R8U1_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R8U1_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 8.910e-13
Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR 95
            V+ +++KSE L   K F+ D+  A G +I+R+ SD GGEYTG+ F+++ ++ G + E + + TPQ+NG+AE    S+ EMA   +    +G+
Sbjct:  130 VYFMKKKSEVLEKFKMFKADMENATGRKIKRIRSDNGGEYTGRIFKEYLSKQGNRHEKTVSYTPQQNGLAERMNRSLVEMARCMLNHEGIGK 221

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A2ZKQ4_HIBSY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZKQ4_HIBSY)

HSP 1 Score: 72.4 bits (176), Expect = 9.160e-13
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR 95
            V+ L++KSE     ++++  V   NG++++RL SD GGEY  + FR+FCA NG K E +   TPQ+NGVAE    ++ E A +  I A + +
Sbjct:  399 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFREFCANNGIKMETTVPMTPQQNGVAERMNKTLNERARSMRIHAGLPK 490

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A4CGC1_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CGC1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.170e-12
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMA 84
            V+ +++K+E L   K+FE D+  A G +I+RL SD GGEYTG+ F+++ ++ G + E +   TPQ+NG+AE    SI EMA
Sbjct:   55 VYFMKKKAEVLEKFKKFEADMENATGRKIKRLRSDNGGEYTGRLFKEYLSKQGIRHEKTVPYTPQQNGLAERMNRSIVEMA 135

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A2Y6G9_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Y6G9_HIBSY)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-12
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR 95
            V+ L++KSEA    ++++  V    GL+++RL SD GGEY  + FR FCA NG K E +   TP +NGVAE    ++ E A + MI A + +
Sbjct:  485 VYFLKKKSEAFDTFRKWKAMVKNETGLKVKRLRSDNGGEYKNRRFRDFCANNGIKMETTVPMTPHQNGVAERMNRTMNERARSMMIHAGLPK 576

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A3AJF7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3AJF7_HIBSY)

HSP 1 Score: 71.6 bits (174), Expect = 1.710e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR 95
            V+ L++KSE     ++++  V   NG++++RL SD GGEY  + FR FCA NG K E +   TPQ+NGVAE    ++ E A +  I A + +
Sbjct:  513 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAECMNRTLNERARSMRIHAGLPK 604

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A3BE56_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BE56_HIBSY)

HSP 1 Score: 71.6 bits (174), Expect = 1.730e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR 95
            V+ L++KSE     ++++  V   NG++++RL SD GGEY  + FR FCA NG K E +   TPQ+NGVAE    ++ E A +  I A + +
Sbjct:  501 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPK 592

[Close]

BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A3A1U7_HIBSY (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A1U7_HIBSY)

HSP 1 Score: 71.6 bits (174), Expect = 1.730e-12
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR 95
            V+ L++KSE     ++++  V   NG++++RL SD GGEY  + FR FCA NG K E +   TPQ+NGVAE    ++ E A +  I A + +
Sbjct:  395 VYFLKKKSEVFDTFRKWKAMVENENGMKVKRLRSDNGGEYRNRRFRDFCANNGIKMETTVPMTPQQNGVAERMNRTLNERARSMRIHAGLPK 486

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BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Match: A0A6A3G5S7_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3G5S7_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 2.550e-12
Identity = 36/81 (44.44%), Postives = 53/81 (65.43%), Query Frame = 0

Query:    4 VHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQFCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMA 84
            V+ +++KSE L   K F+ D+  A G +IRRL SD GGEYTG+ F++  ++ G + E +   TPQ+NG+AE    S+ EMA
Sbjct:  130 VYFMKKKSEVLEKFKMFKADMENATGRKIRRLRSDNGGEYTGRLFKECLSKQGIRHEKTVPYTPQQNGLAERMNRSLVEMA 210

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig56350.13163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6G0JTE1_9STRA	6.010e-13	43.21	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A151QP37_CAJCA	6.660e-13	41.18	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6G0R8U1_9STRA	8.910e-13	38.04	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A2ZKQ4_HIBSY	9.160e-13	40.22	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6A4CGC1_9STRA	1.170e-12	44.44	Integrase catalytic domain-containing protein n=3 ...	[more]
A0A6A2Y6G9_HIBSY	1.700e-12	41.30	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6A3AJF7_HIBSY	1.710e-12	40.22	Uncharacterized protein n=1 Tax=Hibiscus syriacus ...	[more]
A0A6A3BE56_HIBSY	1.730e-12	40.22	Uncharacterized protein n=1 Tax=Hibiscus syriacus ...	[more]
A0A6A3A1U7_HIBSY	1.730e-12	40.22	Omega-6 fatty acid desaturase, endoplasmic reticul...	[more]
A0A6A3G5S7_9STRA	2.550e-12	44.44	Integrase catalytic domain-containing protein n=3 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..93 e-value: 2.6E-12 score: 48.5
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 7..75 e-value: 2.3E-13 score: 50.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..95 score: 9.114
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 7..92

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig56350	contig	H-paniculata_contig56350:604..891 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig56350.13163.1	mRNA_H-paniculata_contig56350.13163.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig56350 301..1035 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig56350.13163.1 ID=prot_H-paniculata_contig56350.13163.1|Name=mRNA_H-paniculata_contig56350.13163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MRKVHTLRQKSEALWALKQFERDVARANGLRIRRLGSDQGGEYTGKSFRQ
FCAENGTKQEFSAAGTPQRNGVAEYSWCSIFEMATASMITANMGR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf