mRNA_H-paniculata_contig5617.13144.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 5.730e-10 Identity = 33/69 (47.83%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 100 QRSEDPDVAIRYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVSMVVLEP 306
++ ED V ++YL N++ HPDD KYR LK SN+KF EVWL +R +FLA+GF +R V + L P
Sbjct: 41 RQGEDSTVGVKYLRNVLNHPDDVKYRTLKISNKKFYTEVWLNSGMRGLFLALGFRKRSGGIVGLDPLAP 109
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 9.260e-9 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 106 SEDPDVAIRYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGF 261
+EDP A++YL NI HP + KYR LKK N +F EVWL P +R +F AIGF
Sbjct: 21 NEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGF 72
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: A0A7S2SHY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHY0_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 1.570e-5 Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = 1
Query: 97 EQRSEDPDVAIRYLENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVS--MVVLEPFP 312
+Q +P + +RYL NI AHP + +YRR++ +N KF + VW+ R +F A+GF + Q E S +V+ EP P
Sbjct: 158 DQECGEPQLMLRYLRNISAHPSEARYRRIRVTNGKFSKGVWVAAGGRMLFRAVGFREVQTEDGSKELVMGEPSP 231
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Match: F2UFY3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UFY3_SALR5) HSP 1 Score: 57.0 bits (136), Expect = 6.480e-5 Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 136 LENIIAHPDDPKYRRLKKSNRKFEREVWLQPSVREVFLAIGFEQRQEEGVSMVVLEPFP 312
L N++ HPDDPKYRR++K N +R+++ P E LAIGF + +EE S+ + +P P
Sbjct: 243 LGNLVDHPDDPKYRRVRKENAALQRDLFGHPGGVEAVLAIGFRESEEEPGSLYIRQPSP 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5617.13144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5617.13144.1 >prot_H-paniculata_contig5617.13144.1 ID=prot_H-paniculata_contig5617.13144.1|Name=mRNA_H-paniculata_contig5617.13144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp MASQEGITPVDMGSLNCKVREVEQRSEDPDVAIRYLENIIAHPDDPKYRRback to top mRNA from alignment at H-paniculata_contig5617:3261..9618+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5617.13144.1 ID=mRNA_H-paniculata_contig5617.13144.1|Name=mRNA_H-paniculata_contig5617.13144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6358bp|location=Sequence derived from alignment at H-paniculata_contig5617:3261..9618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5617:3261..9618+ >mRNA_H-paniculata_contig5617.13144.1 ID=mRNA_H-paniculata_contig5617.13144.1|Name=mRNA_H-paniculata_contig5617.13144.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig5617:3261..9618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |