mRNA_H-paniculata_contig56131.13134.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig56131.13134.1
Unique NamemRNA_H-paniculata_contig56131.13134.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig56131.13134.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 3.880e-6
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = -2 
Query:  648 EFCARHAEKGMVNVLSKTCSHQGCSTRPGYGVAGTRKA 761
            EFC++HA+ GM+NV  K C H GC+ +P +G AG++KA
Sbjct:    4 EFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSKKA 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig56131.13134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSL8_ECTSI3.880e-652.63EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig56131contigH-paniculata_contig56131:323..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size763
Cds size558
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.6076276-UTR-H-paniculata_contig56131:322..5261622930596.6076276-UTR-H-paniculata_contig56131:322..526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56131 323..526 +
1691481364.9097004-UTR-H-paniculata_contig56131:322..5261691481364.9097004-UTR-H-paniculata_contig56131:322..526Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig56131 323..526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930596.622669-CDS-H-paniculata_contig56131:526..10841622930596.622669-CDS-H-paniculata_contig56131:526..1084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56131 527..1084 +
1691481364.920265-CDS-H-paniculata_contig56131:526..10841691481364.920265-CDS-H-paniculata_contig56131:526..1084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig56131 527..1084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig56131.13134.1prot_H-paniculata_contig56131.13134.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig56131 527..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig56131.13134.1

>prot_H-paniculata_contig56131.13134.1 ID=prot_H-paniculata_contig56131.13134.1|Name=mRNA_H-paniculata_contig56131.13134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MCSSIPNKASTTNSSHRCCETGSGMERRNATTSVFRLAPLSRDDMPASGM
RRASCSVMLNLPEMRARFVLRLSREVELPMCDGTVRMKWCFLPFSPVEEH
PSPLTSSDAASSLTCEGLDSFFKRSPRLVLLLSLTLPIPLSECRAQNSAF
LVPATPYPGRVEQPWWEHVLLRTLTIPFSACRAQNS
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mRNA from alignment at H-paniculata_contig56131:323..1084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig56131.13134.1 ID=mRNA_H-paniculata_contig56131.13134.1|Name=mRNA_H-paniculata_contig56131.13134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=762bp|location=Sequence derived from alignment at H-paniculata_contig56131:323..1084+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCACCGAAAAACGTTTCCACCGTGTTCAGCCCTCGAACTCGGAAGCCATT
GCATCCGCCCACACGTTCACGTAATGCGAAGCGCAAGCTAAAGCGTACGA
TATCGGCTCCGGCTCCACGTGCAGGACGAGAACTTCGGTAAATTACTCGG
CTTTCGTGTAGTTGCTCCTCCGTCAGCAGAGTATTGATTGTCTGACCCCC
TTCAATGTGCTCCAGTATACCGAATAAAGCCTCTACGACCAACAGTAGTC
ATCGCTGCTGTGAAACGGGGTCCGGCATGGAACGCCGCAATGCAACCACC
TCCGTCTTCAGATTGGCCCCGTTGTCGAGAGATGACATGCCGGCCTCAGG
CATGCGGAGGGCCAGCTGCTCTGTGATGCTCAATCTACCGGAGATGCGAG
CCCGCTTTGTGCTGCGACTCTCGCGCGAGGTGGAGTTACCGATGTGTGAT
GGAACAGTTAGGATGAAGTGGTGCTTTCTGCCTTTCTCCCCAGTCGAAGA
ACATCCTTCACCATTGACGTCCTCCGATGCCGCTTCAAGCTTGACCTGCG
AGGGATTGGACAGTTTCTTCAAACGATCGCCGCGGCTGGTGCTCTTGCTC
TCTCTCACGTTACCCATCCCGTTGTCGGAATGCCGCGCACAGAACTCTGC
CTTTCTCGTGCCCGCCACCCCATACCCCGGTCGTGTAGAGCAGCCCTGGT
GGGAGCACGTTTTGCTCAGGACGTTAACCATTCCCTTTTCGGCATGCCGC
GCACAGAACTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig56131:323..1084+

>mRNA_H-paniculata_contig56131.13134.1 ID=mRNA_H-paniculata_contig56131.13134.1|Name=mRNA_H-paniculata_contig56131.13134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig56131:323..1084+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTCCAGTATACCGAATAAAGCCTCTACGACCAACAGTAGTCATCG
CTGCTGTGAAACGGGGTCCGGCATGGAACGCCGCAATGCAACCACCTCCG
TCTTCAGATTGGCCCCGTTGTCGAGAGATGACATGCCGGCCTCAGGCATG
CGGAGGGCCAGCTGCTCTGTGATGCTCAATCTACCGGAGATGCGAGCCCG
CTTTGTGCTGCGACTCTCGCGCGAGGTGGAGTTACCGATGTGTGATGGAA
CAGTTAGGATGAAGTGGTGCTTTCTGCCTTTCTCCCCAGTCGAAGAACAT
CCTTCACCATTGACGTCCTCCGATGCCGCTTCAAGCTTGACCTGCGAGGG
ATTGGACAGTTTCTTCAAACGATCGCCGCGGCTGGTGCTCTTGCTCTCTC
TCACGTTACCCATCCCGTTGTCGGAATGCCGCGCACAGAACTCTGCCTTT
CTCGTGCCCGCCACCCCATACCCCGGTCGTGTAGAGCAGCCCTGGTGGGA
GCACGTTTTGCTCAGGACGTTAACCATTCCCTTTTCGGCATGCCGCGCAC
AGAACTCTATGTGCTCCAGTATACCGAATAAAGCCTCTACGACCAACAGT
AGTCATCGCTGCTGTGAAACGGGGTCCGGCATGGAACGCCGCAATGCAAC
CACCTCCGTCTTCAGATTGGCCCCGTTGTCGAGAGATGACATGCCGGCCT
CAGGCATGCGGAGGGCCAGCTGCTCTGTGATGCTCAATCTACCGGAGATG
CGAGCCCGCTTTGTGCTGCGACTCTCGCGCGAGGTGGAGTTACCGATGTG
TGATGGAACAGTTAGGATGAAGTGGTGCTTTCTGCCTTTCTCCCCAGTCG
AAGAACATCCTTCACCATTGACGTCCTCCGATGCCGCTTCAAGCTTGACC
TGCGAGGGATTGGACAGTTTCTTCAAACGATCGCCGCGGCTGGTGCTCTT
GCTCTCTCTCACGTTACCCATCCCGTTGTCGGAATGCCGCGCACAGAACT
CTGCCTTTCTCGTGCCCGCCACCCCATACCCCGGTCGTGTAGAGCAGCCC
TGGTGGGAGCACGTTTTGCTCAGGACGTTAACCATTCCCTTTTCGGCATG
CCGCGCACAGAACTCT
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