mRNA_H-paniculata_contig12072.1313.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12072.1313.1
Unique NamemRNA_H-paniculata_contig12072.1313.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12072.1313.1 vs. uniprot
Match: D8LJ90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ90_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 5.110e-26
Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:   46 QQEEQRSVSVLDKKIADTLSYADELLDVKKDETIEGIVAAKKVVGSLGPVQSAVGAACNVGDGVGKAYVSANET 267
            ++ EQ+SV+VLDKKI + LSYADE++DVKKDETIEGIV+ KK + +LGPVQ+ VGAACNVGDGVGKAY SAN+T
Sbjct:  139 EEAEQKSVAVLDKKICEALSYADEVVDVKKDETIEGIVSVKKTINTLGPVQAVVGAACNVGDGVGKAYGSANDT 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12072.1313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ90_ECTSI5.110e-2672.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12072contigH-paniculata_contig12072:4020..7790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005200.1
Exons3
Model size489
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12072.1313.1prot_H-paniculata_contig12072.1313.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12072 4020..7790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928923.90338-CDS-H-paniculata_contig12072:4019..42201622928923.90338-CDS-H-paniculata_contig12072:4019..4220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12072 4020..4220 -
1691480668.7509751-CDS-H-paniculata_contig12072:4019..42201691480668.7509751-CDS-H-paniculata_contig12072:4019..4220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12072 4020..4220 -
1622928923.9170105-CDS-H-paniculata_contig12072:5508..55891622928923.9170105-CDS-H-paniculata_contig12072:5508..5589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12072 5509..5589 -
1691480668.7609625-CDS-H-paniculata_contig12072:5508..55891691480668.7609625-CDS-H-paniculata_contig12072:5508..5589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12072 5509..5589 -
1622928923.9332957-CDS-H-paniculata_contig12072:7583..77901622928923.9332957-CDS-H-paniculata_contig12072:7583..7790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12072 7584..7790 -
1691480668.7690482-CDS-H-paniculata_contig12072:7583..77901691480668.7690482-CDS-H-paniculata_contig12072:7583..7790Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12072 7584..7790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12072.1313.1

>prot_H-paniculata_contig12072.1313.1 ID=prot_H-paniculata_contig12072.1313.1|Name=mRNA_H-paniculata_contig12072.1313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=163bp
MVLVGLCPPAWPRCFQQEEQRSVSVLDKKIADTLSYADELLDVKKDETIE
GIVAAKKVVGSLGPVQSAVGAACNVGDGVGKAYVSANETVGGVWQQVWDS
AANTYTEVTTMAGDTVTNVSNTAGSAATQVVTTTGNAVDAAKSTADSTVE
GVKVWRAALPEN*
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mRNA from alignment at H-paniculata_contig12072:4020..7790-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12072.1313.1 ID=mRNA_H-paniculata_contig12072.1313.1|Name=mRNA_H-paniculata_contig12072.1313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3771bp|location=Sequence derived from alignment at H-paniculata_contig12072:4020..7790- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATTGGTGGGGTTGTGCCCGCCTGCTTGGCCGCGTTGCTTCCAGCA
GGAGGAGCAGCGGTCTGTGTCAGTGTTGGACAAGAAGATTGCGGACACGT
TGTCGTACGCGGACGAGTTGTTGGACGTGAAAAAGGACGAGACGATAGAG
GGCATTGTGGCCGCGAAGAAAGTGGTGGGGAGCCTCGGCCCGGTGCAGAG
TGCCGTGGTGAGAAAAAGAGAAGCAGAGAGTGGGATAGGAAGAGAGGGAC
GGATTACTGTTCATTTTTCACCTTAAGGCGTAGTTGTTTAGAGTCGGGTA
TTGTACTTGGCGCGAAATTATGATTGACCAAGTAGTTCAGAGCCCTCGCC
GTGTTTTTTTTTTTTTTTAAGATATCCTAGCTAAAGGAAGAAGGCTCATT
TCTTAAGATTCACCATTCTATGAGGGTTCTTGTGGTGGTTTTTCAATCCA
GCGCCCTTTTCGGTACGTAACCCGAGAGGACGTTGCCCTCCAATCCCCCG
TGCCCCCTCCCCCCTTCGGCGCGCGCCACTAGAACAGAGAAGATGAAATG
GAATGGTTGAAACCTCGAACCGATATGAATATTTCGGACGGTTTGACATC
GGAATAATGTTTTCAAAGTCAACTAAAAGATCAACGTGAGTCAGCACATC
TCAGGCTCGTCATTATTCTCGGGATAATAGCGTTTGGACCGCGGTTTCGA
GAGAATAATGTTTCACTCTTCCGCTTGTTTTGCATGAAGCACAGTCGGAA
AAAAAGGCTAGAATAGCGGTTTACTCAAATGCATGGTAGGTATAACAAAC
AGTTTACTGGGTAGACTAAAACCAAGATGACTGTTTTTTGTAGTTCGCTC
AAAATTTGTCCGGAGCGTGAATGTTACAAACGAACTCATGGAAGTATTCA
CCTGAACGTTCAGCATGCGCGCGTTCATTCTGTGAGCGTCGGGTGTCAAC
CACGACTGCAGCGAATACTATTCAAACGATTGGTTTTGCCAGGGGGGTAA
GACGTACTTTTGTGTGCCCGCACAGGCTGAGACGCAGACACGTACTTATG
AAAGTTTCGTCTAATAGTCGTTCTAAAATTTGGATGTTTTTTCTCCCCCC
CTTTCCTTTTTTTTCTTTTTAATTCCTCATATATATATATTTTTTTTTCT
TAATACTCCAAATTTTGCGAAATTTCAGGAACGAGAAAGGGATGATGATT
ATTACAGTGTTTTTTTCTTAACCCTATCTCAAGCTTATTCGATTTTTCCG
ATATGATCTCAGCGTGTTTTCTGCAGAAGGAAAAACAAGAGGAAAGAGAC
GGGAAAAAAAACAACCCTGCCCTAGACCATTCGAAGTATGATCCGGTAAG
TGGACGTACGAAAGAGCGATTGGCCATCGGAGATCGCTCTGATAGGAACG
AATCTCCGTCCGCTCGGGGACGCGTGGCTAGCGGTCTAAAAACTACGACA
TGCAAAACATCACTACGCCTCCCCCCTATTTATTCAATTTTGCTAAGAAG
TATATAAACTCAACATGGATACAGTGGAACTACTATATAGTTTCAGATTT
ATACGCAGGAGATGACTTGAAAATGAGACATGCAGTTAGTGAAATGGATT
TTTTTTATCCTTCTCTCCCCCCCTCCCCCTCCCCCAGCCGCTACCGCCAC
GCTCTACTGGTCCACAGTAGGGGAGCGTCAGGGTCGGAGAAAATCGAACG
TGTTTTTGTTGTACCAGGTCTACGATATTCGATATTTTAGACGTATTTGG
ATAATGTTATATCGATTTTTTATTGATATTTTTAGTATTGAGATATCGCT
CGGTGGGAAGGCAACACAACTTCGATATTGACAAAAGCGCAGGATCACGT
ACATTGCGAGTCCCTACGCTGGGTAGCAGGGCGAGATTCTTGTTGTAACG
CGCGTTTTTGACAATCTGGTATTTTTTGGTTTGTAAGTTTTAGTAGATAT
TCTATTGATTTTCTGTTCTAATGAGCATTTTACGCCGAAATGAATGTTCC
GGGTACGACAGCATTTTAGGGCATACCGTCCTAAACCATACAAATGATGA
TGGATCACTGATAACGTTTTGTAAGGACGTTCCGTCTCCCTTATCACAAC
GTTCAACGTTTCGCAAGTGTCTCGATTTTTTTTTGGTGTGAAATCGACAG
AATATTTGAACCTGTTTCTGTCCAACGGGCGGTATTTTGTTCGTCGAGCA
GGGCGCGGCTTGCAACGTTGGTGACGGCGTCGGCAAGGCGTACGTTTCTG
CGAACGAAACCGTCGGCGGCGTTTGGCAGCAGGTGGACAGTGTGTGTGTG
TGTGTGTGTGTGTGTCAACAGCACCACGAGAAACTTTCAACCGTGCGTTC
ATGCGACAACAAGGCGTTAAAATGTCAACAACGAGTTGATGTGTCGACGA
CGAGGCATCAACTTGTCAGCAGAGGGATACGTGAATCAATGTCAATACGT
TCGTGTGTCCATTGTGTCTCGGGTAATCTGTGCAGAACACGTTCCTGTAA
CGTTCCTGAGATTCCTAAAGCCCGTTCTCCTACACAGCATTCTAGCAGCA
ATTTTGCCTCATGTCAACACAACGTTGTAGCTGTCGCCAATTCTTTGGAG
ACCGCGCTCATTCCGGTAGAATCAGCGCATCCTCCCGCTGCTCCGCTCGT
TTGAGTGTGAGTGGACAGAAGCGGGGATAGTAGCGTACATATATCATTTG
GCGCGACTTGCTGCAGTCTAGGCTTTGGATGTAGGGGCTGCTTGCCGTCG
TTCGTGTTGGAGAAGTGGCGGTGCATTGCATCTGTTCAGACGTGCATAAC
TCTGTTGTGGTGAGGAATTGTGTCTGGCCCACATCGGGACTTAGCTCTCA
AGACGGTTGATGTTCCCGAAAGCCGGACCGCGAGAATGAAGTCAAGCACA
CAACCCCCGCGATAATCCAACCGAACGTATTATTGCGAAGTTACCTAGGG
AAGAACCTTGAGAGTGTGAGTGAGGGAGCCATGTTTATACCTTCGGGTTG
CTGTCGCTGCTTGATTTTCTCTAGGGTCGCTTGTATATCTCAACGGCAAC
GGCTCAGATGGCAGCTAAAAACCCATGTTGGGAATAAATGCAACGTCTTC
ACCGAAGGTAGCACGCATGAAATACAGCGTGAGACCTCCCGATTTCGAGG
CGGCGGTATGTATCTTTGTGACGAGCCCAAAAGGGCCGATTCCCCTGTAA
CATCGATCTGCTTTTTTGTGTTGTAGAAATTGTGATGAGTCGTCCTTGTC
AAGCCGGATTAACCTGGCCTTTTGTTTGTTTGTGTCCCAACAGTTTCGCC
TTGAACCGTTTTTGACCGAGAGGGAGGGGAGGAGGGAGGGGGGGGGTCAT
GATGGTCCACTTATGTTTACATTAACCATTTGGTATGACTTCCACTTGTG
TTTGAACGCTGCCCCTTGCAGTAAGTGGAGATAGATTCCCAATGTCCCCA
TTGGTCATTATCCAAAGGGTTGAAAATCGAGGTACCGGCTTGGGACCGGC
CGTATCGTAAAAACCTAGGATAGTGGTTAATTGTTTGCTCTTGTTTGCTC
CTGTTTGCCGTGTTTTCCAGGTTTGGGACTCTGCTGCGAACACGTACACT
GAAGTTACGACCATGGCTGGCGACACGGTGACGAACGTTTCTAATACCGC
TGGAAGTGCCGCTACCCAGGTCGTGACCACCACCGGTAACGCTGTGGATG
CTGCAAAGTCGACTGCCGATAGCACCGTAGAGGGTGTCAAGGTATGGAGA
GCGGCTCTACCCGAAAACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12072:4020..7790-

>mRNA_H-paniculata_contig12072.1313.1 ID=mRNA_H-paniculata_contig12072.1313.1|Name=mRNA_H-paniculata_contig12072.1313.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at H-paniculata_contig12072:4020..7790- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATTGGTGGGGTTGTGCCCGCCTGCTTGGCCGCGTTGCTTCCAGCA
GGAGGAGCAGCGGTCTGTGTCAGTGTTGGACAAGAAGATTGCGGACACGT
TGTCGTACGCGGACGAGTTGTTGGACGTGAAAAAGGACGAGACGATAGAG
GGCATTGTGGCCGCGAAGAAAGTGGTGGGGAGCCTCGGCCCGGTGCAGAG
TGCCGTGATGGTATTGGTGGGGTTGTGCCCGCCTGCTTGGCCGCGTTGCT
TCCAGCAGGAGGAGCAGCGGTCTGTGTCAGTGTTGGACAAGAAGATTGCG
GACACGTTGTCGTACGCGGACGAGTTGTTGGACGTGAAAAAGGACGAGAC
GATAGAGGGCATTGTGGCCGCGAAGAAAGTGGTGGGGAGCCTCGGCCCGG
TGCAGAGTGCCGTGGGCGCGGCTTGCAACGTTGGTGACGGCGTCGGCAAG
GCGTACGTTTCTGCGAACGAAACCGTCGGCGGCGTTTGGCAGCAGGGCGC
GGCTTGCAACGTTGGTGACGGCGTCGGCAAGGCGTACGTTTCTGCGAACG
AAACCGTCGGCGGCGTTTGGCAGCAGGTTTGGGACTCTGCTGCGAACACG
TACACTGAAGTTACGACCATGGCTGGCGACACGGTGACGAACGTTTCTAA
TACCGCTGGAAGTGCCGCTACCCAGGTCGTGACCACCACCGGTAACGCTG
TGGATGCTGCAAAGTCGACTGCCGATAGCACCGTAGAGGGTGTCAAGGTA
TGGAGAGCGGCTCTACCCGAAAACTAGGTTTGGGACTCTGCTGCGAACAC
GTACACTGAAGTTACGACCATGGCTGGCGACACGGTGACGAACGTTTCTA
ATACCGCTGGAAGTGCCGCTACCCAGGTCGTGACCACCACCGGTAACGCT
GTGGATGCTGCAAAGTCGACTGCCGATAGCACCGTAGAGGGTGTCAAGGT
ATGGAGAGCGGCTCTACCCGAAAACTAG
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