mRNA_H-paniculata_contig560.13121.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig560.13121.1
Unique NamemRNA_H-paniculata_contig560.13121.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: D7FKM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM2_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.490e-70
Identity = 154/231 (66.67%), Postives = 165/231 (71.43%), Query Frame = 2 
Query:  536 GNVAVAGG-GGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQG------VTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQESAESEPDALAGGSAMSDDSD 1207
            GN   AG  GGMGDVMARILGQK+DTR QAPVLAKRKTK MKEME AS KRAE++GKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQ QG                    KA  VKGASRH FLDMLK+GVKP  G+  AG     XXXXXXX              D  +GGRSWSVLKEDYM+GAS+MKNWDQ+SA+SE DA+ G S    D D
Sbjct:  140 GNSTPAGTTGGMGDVMARILGQKLDTRVQAPVLAKRKTKTMKEMENASVKRAETRGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQNQGGAXXXXXXXXXXXXXXXXXXKATVVKGASRHAFLDMLKTGVKPTGGAAEAGAXXXXXXXXXXXXXXXXXXXXAVGERD-EDGGRSWSVLKEDYMMGASTMKNWDQDSADSEIDAIGGPSNHMSDED 369
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A835YTV9_9STRA (Rrp15p-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV9_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.630e-30
Identity = 94/212 (44.34%), Postives = 113/212 (53.30%), Query Frame = 2 
Query:  554 GGGGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGS------------GKT-RRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQES 1150
            G GGMGDVMARILGQ++   + APVLAKRKTK MKEM E + ++A    K A RRA   QQ V+PD T+ D ERQLKKIATRGVVALFNAIS++                       GK  R+   AAAVK  S+  F  M+K       G    GV GG                           G  WSVL++DYM+G+  +K+WDQES
Sbjct:  130 GAGGMGDVMARILGQQI-AGSSAPVLAKRKTKAMKEMAEEAERKATLVAKRAERRAARAQQLVVPDVTSQDRERQLKKIATRGVVALFNAISQQXXXXXXXXXXXXXXXXXXXXXXXGKRGRKDGAAAAVKTMSKAAFAGMMKGDDANPRGGGAGGVKGGAA-------------------------GEGWSVLQDDYMMGSKVLKDWDQES 315
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A4D9DC47_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DC47_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.520e-26
Identity = 83/209 (39.71%), Postives = 119/209 (56.94%), Query Frame = 2 
Query:  563 GMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDG-AEGGRSWSVLKEDYMLGASSMKNWDQESAESEPDALAGGS 1186
            GM DVMARIL Q+V+ +  APVLAKR+T +MKE EE    RA +K  +  +RA +  Q  +PDHT  + ERQLK+IATRGVVALFNA++K ++    +  GSG           K  S+  FL+MLKS    ++G    G  GG        + G G    ++ + +G AE   SW+ +++DY++ A  + ++ +   E E   L GGS
Sbjct:  135 GMADVMARILNQQVNKK--APVLAKRRTALMKETEEEKKARARAKTAAERKRATLNHQLYVPDHTDAEKERQLKRIATRGVVALFNAVTKARQVQEEKGGGSG-------PGKAKDMSKKEFLEMLKSSSSKSSGPRGMGADGG---PAREKSGGGGNPFLDEFATEGKAEREASWAAIQDDYLMKAPKIDDYSEGEEEMEGPGLMGGS 331
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A7S3YGD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGD6_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 5.030e-16
Identity = 79/234 (33.76%), Postives = 114/234 (48.72%), Query Frame = 2 
Query:  512 ELSAEDGTG--NVAVAGGG-GMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAA-VKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQESAESEPDALAGGSAMSDD 1201
            E S +DG G  + + AG G GM +V++++L Q V      P+LAKRKTK+MK+ E  + +R E   +  A +   T+  + PD     YERQLKK+ATRGVVALFNAI+K Q+     ++G        K     K AS+  FL+MLK     +AG      T                +    D  D  +    W  L ++++L   + K WDQES   E    A  S + ++
Sbjct:   60 ESSEDDGDGEQHASSAGKGFGMSEVISKLLEQPVSKPN--PILAKRKTKMMKDREAQAQERRELAQRQLANKEKKTKGLIAPDPLQAPYERQLKKVATRGVVALFNAIAKHQRGATEGEEGKXXXXXGVKKKGDAKTASKAGFLEMLKG--SNSAGKEQKNNT----------------SKATNDGSDDEQVKPKWKALDDNFLL---AKKGWDQESGSEEEGESAEDSGIDEE 270
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A3R7HD14_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HD14_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.700e-15
Identity = 70/206 (33.98%), Postives = 100/206 (48.54%), Query Frame = 2 
Query:  524 EDGTGNVAVAGGGGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWD 1141
            ED  G+ AV    G GD M++ILGQ V    Q P+LAKR T  M+E++    +   ++  +A +R    +   IPDHTT   +R+L+ IAT+GVVALFNAI K Q Q   +D+ + K         VK  S+  FL +LK                                A  K +        SWSV+++D+M+GA  +K+WD
Sbjct:   60 EDNKGHEAV----GFGDAMSKILGQNVAEDAQ-PILAKRTTARMREIQSDKKETKTARLSTAEKREREQKDMAIPDHTTAVQDRKLRMIATKGVVALFNAIEKHQHQNGKKDEKNDKK--------VKEMSKDNFLGLLK--------------------------------AQQKATTAAPAAKSSWSVVQDDFMMGAK-LKDWD 219
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A6P4YE86_BRABE (RRP15-like protein n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YE86_BRABE)

HSP 1 Score: 86.7 bits (213), Expect = 2.950e-15
Identity = 86/252 (34.13%), Postives = 119/252 (47.22%), Query Frame = 2 
Query:  476 SEGSEQSEDRDDELSA---EDGTGNV-----AVAGGGGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQESAESEPDALAGGSAMSDDSD 1207
            SE    S + DDE+SA   EDG  +      + AG  G  D MA+ILG++V +  Q P+L K K +  K  E           K+  +R       V PD    + ER L++IATRGVV LFNA+ K QK    +   +G T  + KA A+   S+  FLD LK        +  AG   G         + +G    +KD         SW +L++DYM+G S+MK+WD+ES E E +        S D D
Sbjct:   38 SEADASSNEDDDEISADHDEDGEDSPTHPTDSTAGNAGWADAMAKILGKQVASNKQTPILVKNK-EFEKRKEXXXXXXXXXTKKAGVKRQWEEMGRVKPDVAEKERERALQRIATRGVVQLFNAVKKEQKTIQEKLQEAGPTE-SKKAKAMSSISKGSFLDKLKE-------TKAAGAPSGTMERRKDNQLNKGKVP-DKDEP-------SWKILRDDYMMG-SNMKDWDKESDEEEEERSGEEDLSSGDED 271
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A8J9ZTZ8_BRALA (RRP15 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZTZ8_BRALA)

HSP 1 Score: 86.3 bits (212), Expect = 3.730e-15
Identity = 85/251 (33.86%), Postives = 121/251 (48.21%), Query Frame = 2 
Query:  476 SEGSEQSEDRDDELSAEDGTGNVA-------VAGGGGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQESAESEPDALAGGSAMSDDSD 1207
            SE    S + DDE+S  D  G  +        AG  G  D MA+ILG++V +  QAP+L K K    K  E+          K+  +R       V  D T  + ER L++IATRGVV LFNA+ K QK    +   +G T  + KA A+   S+  FLD LK+       ++ +GV  G             G A +KD         SW +L++DYM+G S+MK+WD+ES E E +  +    +S  S+
Sbjct:   35 SEADASSNEDDDEISDHDDDGEDSPTXXXXXXAGNAGWADAMAKILGKQVASNKQAPILVKNKD-FEKRKEKXXXXXXXXTKKAGVKRQWEELGRVKADVTEKERERALQRIATRGVVQLFNAVKKEQKTIQEKLQEAGPTE-SKKAKAMSSISKGSFLDKLKT-------TMASGVPSGTERRKDNPLDK--GKAVDKDEP-------SWKILRDDYMMG-SNMKDWDKESDEEEEEGRSRDDDLSSGSE 266
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A1V9ZZ74_9STRA (TsaA-like domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZ74_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.950e-15
Identity = 65/200 (32.50%), Postives = 100/200 (50.00%), Query Frame = 2 
Query:  563 GMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQESAESE 1162
            G  D M+++LGQ VDT  +AP+LAKR T  M+E+ +  ++   SK  + A++    +  VIP H T   ++ L+ IAT+GVVALFNAI+K Q    T D         +K+  +K   +  FL +LK   K                                +  +  E   SW+V+++DYM+GA  MK+W++E  E+E
Sbjct:  279 GFADAMSKVLGQNVDTE-KAPILAKRITAQMREISKDKSESKVSKLSAKAKKLRDEKDMVIPSHATMVQDKSLRMIATKGVVALFNAIAKHQHGQTTVD---------SKSKEIKSMDKDAFLGLLKKNSK------------------------------KTEEKEEKEPASSWAVVQDDYMMGAK-MKDWNKEDDEAE 437
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: A0A0P1B0F5_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0F5_PLAHL)

HSP 1 Score: 86.3 bits (212), Expect = 4.060e-15
Identity = 70/210 (33.33%), Postives = 103/210 (49.05%), Query Frame = 2 
Query:  518 SAEDGTGNVAVAGGGGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWDQE 1147
            S +DG  + AV    G GD M++ILGQ V    Q P+LAKR T  M+E+E    +   ++  +A +R    +  V+PDHTT   +R+L+ IAT+GVVALFNAI K Q     ++D + K         VK  S+  FLD+LK                                A    + +      SWSV+++D+M+GA  + +WD+E
Sbjct:   45 SEDDGDAHDAV----GFGDAMSKILGQNVAEDAQ-PILAKRTTARMREIEIEKKETKTARVSTAEKREREQKDMVVPDHTTAVQDRKLRMIATKGVVALFNAIEKHQHLVNKQEDKNNKK--------VKEMSKDNFLDLLK--------------------------------ASQHKTTENVATKSSWSVVQDDFMMGAK-LTDWDKE 208
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BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Match: K3W9B8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9B8_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 5.980e-15
Identity = 71/194 (36.60%), Postives = 96/194 (49.48%), Query Frame = 2 
Query:  563 GMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAKRAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISKRQK-QGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAGVTGGVXXXXXXXAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMKNWD 1141
            G GD M++ILGQ V    Q P+LAKR T  M+E+ E       ++  +A +R    +  +IPDHTT   +R+L+ IAT+GVVALFNAI K Q   G   DD + K         VK  S+  FL +LKS  K       A                         S   A+   SWSV+++DYM+GA  +K+WD
Sbjct:   98 GFGDAMSKILGQNVAEDAQ-PILAKRTTARMREIMEEKKVTKTARISAAEKREKEQKDMIIPDHTTAVQDRRLRMIATKGVVALFNAIEKHQHLNGKKADDKNDKK--------VKEMSKDNFLGLLKSSQKSTTKDAAAA------------------------SAPTAKS--SWSVVQDDYMMGAK-LKDWD 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig560.13121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKM2_ECTSI1.490e-7066.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTV9_9STRA7.630e-3044.34Rrp15p-domain-containing protein n=1 Tax=Tribonema... [more]
A0A4D9DC47_9STRA8.520e-2639.71Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3YGD6_HETAK5.030e-1633.76Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A3R7HD14_9STRA2.700e-1533.98Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A6P4YE86_BRABE2.950e-1534.13RRP15-like protein n=1 Tax=Branchiostoma belcheri ... [more]
A0A8J9ZTZ8_BRALA3.730e-1533.86RRP15 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A1V9ZZ74_9STRA3.950e-1532.50TsaA-like domain-containing protein (Fragment) n=1... [more]
A0A0P1B0F5_PLAHL4.060e-1533.33Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
K3W9B8_GLOUD5.980e-1536.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig560contigH-paniculata_contig560:3030..10059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.3
Seed ortholog evalue3.7e-61
Seed eggNOG ortholog2880.D7FKM2
Preferred nameRRP15
KEGG koko:K17967
KEGG TC9.B.25.1
Hectar predicted targeting categoryother localisation
GOsGO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.ribosomal RNA processing 15 homolog
EggNOG OGsKOG2974@1,KOG2974@2759
Ec32 ortholog descriptionProtein of unknown function DUF1665
Ec32 orthologEc-09_000740.1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons6
Model size1669
Cds size1128
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig560.13121.1prot_H-paniculata_contig560.13121.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig560 3489..9977 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930594.833774-UTR-H-paniculata_contig560:3029..34881622930594.833774-UTR-H-paniculata_contig560:3029..3488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig560 3030..3488 -
1691481364.0725267-UTR-H-paniculata_contig560:3029..34881691481364.0725267-UTR-H-paniculata_contig560:3029..3488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig560 3030..3488 -
1622930594.9550338-UTR-H-paniculata_contig560:9977..100591622930594.9550338-UTR-H-paniculata_contig560:9977..10059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig560 9978..10059 -
1691481364.1577313-UTR-H-paniculata_contig560:9977..100591691481364.1577313-UTR-H-paniculata_contig560:9977..10059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig560 9978..10059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930594.8584251-CDS-H-paniculata_contig560:3488..35661622930594.8584251-CDS-H-paniculata_contig560:3488..3566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 3489..3566 -
1691481364.0837963-CDS-H-paniculata_contig560:3488..35661691481364.0837963-CDS-H-paniculata_contig560:3488..3566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 3489..3566 -
1622930594.873566-CDS-H-paniculata_contig560:4266..43321622930594.873566-CDS-H-paniculata_contig560:4266..4332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 4267..4332 -
1691481364.0925813-CDS-H-paniculata_contig560:4266..43321691481364.0925813-CDS-H-paniculata_contig560:4266..4332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 4267..4332 -
1622930594.8872335-CDS-H-paniculata_contig560:5928..61911622930594.8872335-CDS-H-paniculata_contig560:5928..6191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 5929..6191 -
1691481364.1013353-CDS-H-paniculata_contig560:5928..61911691481364.1013353-CDS-H-paniculata_contig560:5928..6191Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 5929..6191 -
1622930594.9000893-CDS-H-paniculata_contig560:6954..71381622930594.9000893-CDS-H-paniculata_contig560:6954..7138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 6955..7138 -
1691481364.122166-CDS-H-paniculata_contig560:6954..71381691481364.122166-CDS-H-paniculata_contig560:6954..7138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 6955..7138 -
1622930594.9143493-CDS-H-paniculata_contig560:8808..90051622930594.9143493-CDS-H-paniculata_contig560:8808..9005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 8809..9005 -
1691481364.1364896-CDS-H-paniculata_contig560:8808..90051691481364.1364896-CDS-H-paniculata_contig560:8808..9005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 8809..9005 -
1622930594.938064-CDS-H-paniculata_contig560:9637..99771622930594.938064-CDS-H-paniculata_contig560:9637..9977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 9638..9977 -
1691481364.1477652-CDS-H-paniculata_contig560:9637..99771691481364.1477652-CDS-H-paniculata_contig560:9637..9977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig560 9638..9977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig560.13121.1

>prot_H-paniculata_contig560.13121.1 ID=prot_H-paniculata_contig560.13121.1|Name=mRNA_H-paniculata_contig560.13121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=376bp
MGGPTRSRSRSTTVVASVAAAGLRKAKNKRKGGGVAAQPATWDHDNSSGS
DADHDAHAKATTQDAPRAQQGKKDKGSLGKNSSASDELPEQNVHDQESRK
RRKGAPKRRRSSTGGGDEESDKPAAISDKEDSEGSEQSEDRDDELSAEDG
TGNVAVAGGGGMGDVMARILGQKVDTRTQAPVLAKRKTKVMKEMEEASAK
RAESKGKSAARRANMTQQFVIPDHTTTDYERQLKKIATRGVVALFNAISK
RQKQGVTEDDGSGKTRRTAKAAAVKGASRHVFLDMLKSGVKPAAGSLTAG
VTGGVGGGGGAGAVGRGGAAWNKDSVDGAEGGRSWSVLKEDYMLGASSMK
NWDQESAESEPDALAGGSAMSDDSD*
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mRNA from alignment at H-paniculata_contig560:3030..10059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig560.13121.1 ID=mRNA_H-paniculata_contig560.13121.1|Name=mRNA_H-paniculata_contig560.13121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7030bp|location=Sequence derived from alignment at H-paniculata_contig560:3030..10059- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGCGTTCAAGGTTTAGTACGGAAGGTGAAACAGCTGTAGACCTCTCCA
ATAAAGCCCTGCGTTATAGGCACTGTTTCGTCATGGGAGGACCAACACGA
TCGCGTTCTCGATCAACTACGGTGGTCGCTAGCGTCGCTGCAGCAGGTCT
ACGAAAGGCCAAAAACAAAAGAAAAGGCGGTGGTGTGGCGGCGCAGCCAG
CGACCTGGGATCACGACAACTCATCGGGATCGGACGCTGACCATGATGCC
CACGCCAAAGCTACAACACAGGATGCTCCCCGCGCACAGCAAGGCAAGAA
AGACAAGGGTTCGTTAGGCAAGAATTCATCCGCGAGTGATGAATTGCCTG
AGCAAAACGTACACGACCAGGAGAGTCGAAAACGACGTAAAGGAGCGCCG
AAACGCCGACGAAGCAGCACAGGTCAGATTCTGGGTGGGTACCCGGAAGG
GTACAAGGTGTAAAACGGTTTAACCATGTCTTGTCTGTCCATGCGTAGCG
TCTCGACTTCGTGCCTCCGTAATTTCTGTTAGTCGAGCGTAGTTGATATT
CGCTCGCAATGCAGGCAGTAGTTGGGTTGGCACAACTGTTTGTGGCTAAC
CACTGTCTCAAAACCAAGGTGCTTGTGCTGTGAAATTGTCCGCCACCAGC
ATGAGCAATCTTCCTTTTACAGACAATTACATGTAGCCCTAAATGGAGTG
CTGATCTGTGCGTGTCATCTTCAAGGATTGGGGCACTTGATTATCGGTAG
ACTAGGGCGTGTTAACAAGTAAGCGGAGGGGGCTGGCTGGCTTCACATTA
GCTCACAGACAACGATACAAACTTCTCGCTGTTGCCAGTACTGATTGTTT
CGTCCCCTGCACCCGGTGTGAGCATGTACTTCGTTGATACAGTACATAAG
TCATTGTTTTCATTGTGTATGTTTTCACAGCTTGTCAACGATGTCGAAAC
GTTACAAGCAGATGTTACTGTGGATGTTTACCTTCCTGTCAGCCGATTTA
TTGTATCAGAAACTTTCGGAGTGCCTATTGACGTTTTTGCTTGACCAATC
GTAGGCGGTGGGGATGAAGAGAGCGATAAGCCAGCGGCCATTAGCGACAA
GGAGGACTCTGAGGGCTCCGAGCAGTCAGAAGACAGAGATGACGAACTTA
GCGCGGAGGATGGGACTGGGAACGTGGCAGTAGCAGGAGGGGGTGGTATG
GGGGACGTGATGGCCAGAATTTTGGGACAGAAAGTTGACACACGGACGCA
GGTGAGAAACGAAGCTTGAACATCCTTATTTAAAGTCTCCTACGAACAGG
CCACGTCAAGATATATTAGATACGTTTGTTGACTGTGACAGTGAGCTTTG
CTGGGTTGAAAGTATCGTCGGCTGAGCCACACAGGGTTGTCGTGGTGGAT
GCCCGTTGTCCGTTGTTGTGTGTCGGGTACCAAGCTAAGCCCTTCAGGGC
GCAAGATAAGCGGGAAGGAAGTACTGATACTCTCTCGGCGGGAGGCCACA
AAAATATTAAATTTCAACAGATCCACGATTGCTGTTCTCAAGGCAGGACG
AGAAATCACTCTCTCGCCTGTGCAATCGCCTGTATTCCTGTTCTCCAGCA
TATTACGCCTTTTTGCTGGGGAAAAAGGTTTGATAAGCAGATCCCAGTGA
ACAGATTTTCGAGGTGTAAGCCCGGTAATCGCATTCTTATGTGCTTTCAA
AACGCAGTTGGTGCATGCTTTTGTGCTGCAACACGCACTGTTACGCTTTT
AATTTCTAGCTTATCTCAAGGGGCATCGCAATTGACAATCCCCCCCTCGC
GCTGCGCTATGTAGTTTTACCCCACCCAGCCTCTCCATCGCCCCCAAAAT
GTCTTATGAAAGTCTCTCAAACCCGCGGCCAGTGACTGTGGAAATGGATA
ATAGTGCAGTACATACGTGTCAAAAGACTCGCTTCAATGGAAAAGAGAGA
GGAAGTAGACAGAAGGGGACTAGTGGTGACCGTTCATGTCTCAGCGCGGA
GATACCAGCGAAAAGTCCCCCCTCGCGCTCCTCGCTCCAAATCTCCGTCC
TCTCGAGTACTCGTGGTAAAAAGTCTACTAAGCACGGCATGCAAACCATG
AATACACCCCATCCGCAGAGTATTCGTCATTTTGCCGATAACTGTACCGA
GCGCAGATTTCAGGTGGGTACATAGCCTCAACATGGGTACAACAAAGTTA
GTATAATTGTGGTGTGGCAAATATTCAAGTGGATTGACTTGTGATCAAGG
CTTCGGAGATGAACAGTGTGTTTCATTTTTCAAGTCAGTCAGATGTTAGC
TCCCAGGACATGTCATGTCGACGCACAGTACTCGTGCATAGGGATAGATT
GGTACTCCCTAGTTAAGGTAGTAGTACATGCAGCACCTGTTTGAATGTGT
GCGAGAAGCCAGGGTGCTTGGCCGTCATGAGAAAAGATATATCTCATTTA
TCTTGTGTCCTCTAAAGCTACCGATCAGCGTACTCAAAGGTTCTTCAAGC
GCAGTCGAAATACCATTAATATGGCGGTCGCGTGTGGTTGGTTGTGGATA
ACTTACATCTGTGGCAAATAGGAGTAAGCACTTGTTTGGTTCACCTCCCT
CTCTTATTGATATTTTTTTGCTGACAAGTGTACCCGGCTAAAGTTTGAGC
TGCATAACCCCAACATGAGTACAATGAAGTTATCATATGAGGGTTGGAGT
CCTCGCCCTCCCCCCCCTATTTTGGAGGCTCAAGTGTGTTCGGAGGTAAA
GCCTTGGTATAACAAAACTGCGAATTACGATGCCCTTCATTGTCCACAAT
CGGAAAATACGCTTGAAGATGTAAGAAACAACCGTCTTGTGCTGTTGTGG
TAGTACTGGAGTGTGCTTGTATGATACATACATCACTTCTTGGGCGTGCG
CATTTTCGTTTTTTCGAGCAGGCACCTGTTTTGGCCAAGCGTAAAACAAA
AGTCATGAAAGAGATGGAGGAGGCGTCGGCCAAACGGGCGGAGTCTAAGG
GAAAGTCGGCGGCGAGGCGGGCCAACATGACTCAACAATTTGTCATCCCC
GACCATACTACCACCGACTACGAACGCCAGCTTAAGAAAATCGCTACCCG
GGGGGGTAAGGCAGGAACTTTTGGAAGTGATGATACCTTTCTTCTCACGA
ATGGCGAGCGATTTGTTACTGAGGCTGTGCAGTCCGTCAGCAATCGCTCG
TTTTGAGGGGATGCCTTCCTTTTATCTGAAACGTAGGCTTGGGTCGTTCC
ATTTACCTTCGCCGGGAGAACCTGTGGTTTTATGGATTTGGGATCCTTTT
TTTGGACGCGGTCTGTACTGTCTACTATTCTGTTTCTTTAATTTTGGTTA
GTATTACCCAGTTCCTCCCTTACTTCGGTCGTGCGGGCATTTCGAGAGAT
GTACATGGCGTAACAAAGCAGACGTACTACAACCGTGCCACAGGATGCTG
TACTTCGATGCCTTGTACTTCGGTGGGTTATCTCTCGTCTTGTGCACGTT
ATGCCGCATATGGCTCGGCTGGTGCTGTCTCCGCTCATATCTGACGCTTT
GATGTACGATACGTATCCTGTTATACCATATTTACATCATTTTGCTGATA
GTTGTACATGACTGAAATTTAAGGTCAGCTGCATTACCTGAACACAGGTA
CGATGTAGTTATTATATGAGCTTCAGAGCTATATTCCAACTGTAGGAATT
AATGTTGACTTACGAATCAGAATTCCAGTTTGTGAAACAAAGGGCTTTTA
AAGCTGCCCCCTTCCGTAGTGGTCAATGATCTAATGACTTCGGCATTCAA
AATGCAATGCAAAACATGAGTAACCCCCCCCCGCCCGCCCGGTCGTTTTT
CTCTGTGGCAAAACGCAGTTGTGGCGCTCTTCAATGCCATCAGTAAGCGA
CAAAAACAAGGAGTCACTGAGGATGACGGGAGCGGAAAAACTCGCCGCAC
GGCGAAAGCGGCAGCCGTCAAGGGCGCGTCGAGACACGTATTCCTTGATA
TGTTGAAATCTGGTGTTAAACCTGCAGCAGGCAGTTTAACTGCGGGGGTC
ACGGGGGGCGTGGGCGGTGGTGGTGGTGCCGGGGCAGTGGGGAGAGGCGG
CGCGGCGTGGAACAAAGACTCTGTTGATGGGGTGAGTCTTTTTTTCTGGG
AGCATTGAATACGATGCCATTTGTTCAAAATATGAAAATTTCGAATGATT
TATAGACGAAAATTGAAAAGTATGCGCCTCAAGGTTCAGCATGAGCACGT
TTATTTCTTGCCCCCTGGACCATCGACGAGGGGTCCGAATCTTACCAAAA
CGAATTAACGAGGGGGTCGACATTTTTGTTTGTCACGGCCCATTCTGAAA
CTGAGGCGAACACTTTTTTCAGTTTCGTCTCGAGCATTCGAAGTATTCGG
ATTTGGATTCATCGGTGGGGTGAAGTGTTTTGGCACTGCGGGTTCACATA
TCAGTCTAACTTTGAACGTTGCCCGAAGGGAAGCAAATACTAGTGAATAT
CAATATTGCAGAGTAACAAAAGTTGCTCGAAGATTTTCGGTGTGATTCAT
GCTTGGGATCAGCGATCACCGAGTAGTGTATAAAACGACCCCACCTTGGC
CATGTTATACATGTTGTTGTGGTGTACCCGCCTTGTGCACGTCGGGTACA
GTGGAGGATGACTCACTTGAAGCCTTTGCGCACCCGTACGCTATTTCGTA
ACACAAAACGAAGTTAACAGTAAATGTCGAGCGGTGCAGTACCATACTAG
TGCTCAGAACCATGCCAGCTCCCCACTGTGCTGTAATTTTCTGAGCCACA
AGGAAAGTCAGGTGTGGTTATAGAGGCACTCAACGATCTTCGAGTTTCAT
TTTTTTTAATCAGAATCTTTTTTCGGGGATGAACCCCATAATAACACCGA
GATTGACTGAGTCCACCCAATTTGCGCGCGGCGTAGAAAAATGAGCTCCA
CCGACAAAAGGGCAATATTTTGCTCTTTTTCGTATTTTCCAATGAAAAAA
CGTCACAATCAATCGGGAGAACACGTGAAAACGGCCAAATTTATCCCAAC
CTTGAGCGACTGTTAATCCTGATTCACAAATCGGAATGCATGTCGGAGTA
GCCCACGTCGTTCTGTCGGATTTGAGCTTTCTGTCAATATCAACAACACT
CGATGAGTTTGTGCAGAGGGTGAGATACCACCCACCAAATATACCTGCCT
TTACTTAGGGCATAGTAGATATATGTATTTATTGGCTGTACTGGCTAGGG
TGTGTGAACAACGGCGGCCCCCTTTGCCCCTGATCATGTTATACACGTTT
TTTACCCTGTACTTCTGAGTGAAGACTGTTGTACAATAGGTGGAGACCAG
CGCTCAAAGGGTCAAGGCTTCGTTTGTTATAACATAGCTGAGACCCACTA
CGCCCTTAAGGGTAGCAAATCCACGATTACACAGTCGCCTGTTAAATGAC
CCTTAAATTTCCAACCACCGTGGTACGTGGTGCTGAAGGTGTGTCGTCGG
CTGTATTGGTTGTGTTTTAAATGATATTTGAAAGAAAAATGCGGCAAAAG
TTCATGTCTGGCTCGTGCAGCCTTGAGTATTGCAAAGTAACTTTTAACGG
TAATAACATCTACGTCAACGAGCAGCCGTTAGAAGGTATTTTTGTGGTGC
TTCTGTCGACGCCTGGACTTCACTAGTCCAATTCCTTCATTTGGTTCGAC
TTTCTTCTCCTGGTTGTTGTGATTCAGGCGGAAGGTGGGCGATCATGGTC
TGTACTGAAGGAGGACTACATGCTTGGCGCAAGCAGTATGAAGGCAAGAG
GAAACTGTTCTCAAAAAGGGGGTCTACATTCGCGTCCTGCTGTTGTGTTG
CATTTGACAAGAGATTGGTCTTTGCTGTAAGCCTTCTGACGGCCTTCCTG
TACACGGCTCTTGGTCAGCTGTACAATAGACACTCCATTACGAAGATTTT
TCCCGGGGCTAGTTCTGAAGCAGCTTCCAGTTCCTGGTTGAGCTCGGTCT
TGTTTCCGTTGTGCAGAGAAATATTTCGGCTCGAACGGGTTTCCTTATCT
GTTGCTGGTGCTTCCAGGATCACCCCCCTCACATGTGACCGTGTTGGTAA
ACATTCGAAAGCATGTTAAAGCAGATGTCGGGGTGAGCTGCTCTGTCGCA
GCGAATCAGCCTCAACGAGGCTCCCTGGTTATATCTACTTTGTCGACGCT
TCGCAGTACACAGTGTTATCAAGTATGCTATTATCTCTTAAATATTGACC
GCTGTCGTACCCTTGCAAAAGGTAAGTACATGATAATATTTTCCGAACTT
ATTTTCACTGTGAAGATACCACTTTGTGAGTAATTAGATGCAAGGTAAAA
CGCTTGCCATCTGATATTCTCGGAGACGATCAAGCAATGTATGTTGACCA
ACACACTTGCGAGCATCATCAAAATTTCATATCCTTCAAGCCCACTCAAC
TTTCCTCCCCTTCTGAATCCCGATGTCTCCCAAACTACCACAGAACTGGG
ACCAGGAGAGCGCAGAATCTGAGCCCGACGCTTTGGCAGGAGGATCTGCT
ATGTCTGATGACAGTGACTAAGTAGTACAGAGCTGCAGTGGCAAGAGGTT
GTGCAGCTACGTGCATCGACTGTTACTCAGTAGCGTTTTTTTTTGCACTT
GCAGAATGACTTATGTGTTGTGTTCTTGGATGATGCAGAACGATTGAATA
GGACTATACATCAATGTGCGATGGAGTTTATGCTGGATATGCATATCATT
GCTGTAGCTTGCGTGGTCTTGGCACGCAGAAGGGGACTGAGTGCTGGCCG
CGGATGGCGTTGACCATGCGATGCGCACCGATGAAATATGTAAAAGTTGG
AAAGGCCGTTGCGACAGACCTGGCCGCGCAATTATCAGCATATCGCACAT
GCGCACACCACTTTTGCCAAAATCTACATCACAATTTTCGCAGTATTGTC
CACTGTTTTAAACCGGATAATCTGATTGGCTTGCGCTGCATCTCAAGGCA
TGTGGGATGCGACATCGATAATCGTCTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig560:3030..10059-

>mRNA_H-paniculata_contig560.13121.1 ID=mRNA_H-paniculata_contig560.13121.1|Name=mRNA_H-paniculata_contig560.13121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2256bp|location=Sequence derived from alignment at H-paniculata_contig560:3030..10059- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGACCAACACGATCGCGTTCTCGATCAACTACGGTGGTCGCTAG
CGTCGCTGCAGCAGGTCTACGAAAGGCCAAAAACAAAAGAAAAGGCGGTG
GTGTGGCGGCGCAGCCAGCGACCTGGGATCACGACAACTCATCGGGATCG
GACGCTGACCATGATGCCCACGCCAAAGCTACAACACAGGATGCTCCCCG
CGCACAGCAAGGCAAGAAAGACAAGGGTTCGTTAGGCAAGAATTCATCCG
CGAGTGATGAATTGCCTGAGCAAAACGTACACGACCAGGAGAGTCGAAAA
CGACGTAAAGGAGCGCCGAAACGCCGACGAAGCAGCACAGATGGGAGGAC
CAACACGATCGCGTTCTCGATCAACTACGGTGGTCGCTAGCGTCGCTGCA
GCAGGTCTACGAAAGGCCAAAAACAAAAGAAAAGGCGGTGGTGTGGCGGC
GCAGCCAGCGACCTGGGATCACGACAACTCATCGGGATCGGACGCTGACC
ATGATGCCCACGCCAAAGCTACAACACAGGATGCTCCCCGCGCACAGCAA
GGCAAGAAAGACAAGGGTTCGTTAGGCAAGAATTCATCCGCGAGTGATGA
ATTGCCTGAGCAAAACGTACACGACCAGGAGAGTCGAAAACGACGTAAAG
GAGCGCCGAAACGCCGACGAAGCAGCACAGGCGGTGGGGATGAAGAGAGC
GATAAGCCAGCGGCCATTAGCGACAAGGAGGACTCTGAGGGCTCCGAGCA
GTCAGAAGACAGAGATGACGAACTTAGCGCGGAGGATGGGACTGGGAACG
TGGCAGTAGCAGGAGGGGGTGGTATGGGGGACGTGATGGCCAGAATTTTG
GGACAGAAAGTTGACACACGGACGCAGGCGGTGGGGATGAAGAGAGCGAT
AAGCCAGCGGCCATTAGCGACAAGGAGGACTCTGAGGGCTCCGAGCAGTC
AGAAGACAGAGATGACGAACTTAGCGCGGAGGATGGGACTGGGAACGTGG
CAGTAGCAGGAGGGGGTGGTATGGGGGACGTGATGGCCAGAATTTTGGGA
CAGAAAGTTGACACACGGACGCAGGCACCTGTTTTGGCCAAGCGTAAAAC
AAAAGTCATGAAAGAGATGGAGGAGGCGTCGGCCAAACGGGCGGAGTCTA
AGGGAAAGTCGGCGGCGAGGCGGGCCAACATGACTCAACAATTTGTCATC
CCCGACCATACTACCACCGACTACGAACGCCAGCTTAAGAAAATCGCTAC
CCGGGGGGGCACCTGTTTTGGCCAAGCGTAAAACAAAAGTCATGAAAGAG
ATGGAGGAGGCGTCGGCCAAACGGGCGGAGTCTAAGGGAAAGTCGGCGGC
GAGGCGGGCCAACATGACTCAACAATTTGTCATCCCCGACCATACTACCA
CCGACTACGAACGCCAGCTTAAGAAAATCGCTACCCGGGGGGTTGTGGCG
CTCTTCAATGCCATCAGTAAGCGACAAAAACAAGGAGTCACTGAGGATGA
CGGGAGCGGAAAAACTCGCCGCACGGCGAAAGCGGCAGCCGTCAAGGGCG
CGTCGAGACACGTATTCCTTGATATGTTGAAATCTGGTGTTAAACCTGCA
GCAGGCAGTTTAACTGCGGGGGTCACGGGGGGCGTGGGCGGTGGTGGTGG
TGCCGGGGCAGTGGGGAGAGGCGGCGCGGCGTGGAACAAAGACTCTGTTG
ATGGGTTGTGGCGCTCTTCAATGCCATCAGTAAGCGACAAAAACAAGGAG
TCACTGAGGATGACGGGAGCGGAAAAACTCGCCGCACGGCGAAAGCGGCA
GCCGTCAAGGGCGCGTCGAGACACGTATTCCTTGATATGTTGAAATCTGG
TGTTAAACCTGCAGCAGGCAGTTTAACTGCGGGGGTCACGGGGGGCGTGG
GCGGTGGTGGTGGTGCCGGGGCAGTGGGGAGAGGCGGCGCGGCGTGGAAC
AAAGACTCTGTTGATGGGGCGGAAGGTGGGCGATCATGGTCTGTACTGAA
GGAGGACTACATGCTTGGCGCAAGCAGTATGAAGGCGGAAGGTGGGCGAT
CATGGTCTGTACTGAAGGAGGACTACATGCTTGGCGCAAGCAGTATGAAG
AACTGGGACCAGGAGAGCGCAGAATCTGAGCCCGACGCTTTGGCAGGAGG
ATCTGCTATGTCTGATGACAGTGACTAAAACTGGGACCAGGAGAGCGCAG
AATCTGAGCCCGACGCTTTGGCAGGAGGATCTGCTATGTCTGATGACAGT
GACTAA
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