prot_H-paniculata_contig55870.13101.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig55870.13101.1
Unique Nameprot_H-paniculata_contig55870.13101.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length122
Homology
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5J769_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J769_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.010e-19
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMV 110
            ++LP GC    G+VVRLS+++YGLKQ  R W   L+   + +G     +D CV R+ + GVV M++ +HVDD+   G    CD     L         GEL+WY GC F RD V
Sbjct:   15 IRLPPGCGALSGKVVRLSRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFSRDTV 128          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.820e-19
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G+VVRL+K++YGLKQ  R + KRLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     + ++AAL     T   GE++++ GCAF RD
Sbjct:  576 MKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRD 687          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 5.920e-19
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G+VVRL+K++YGLKQ  R + KRLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     + ++AAL     T   GE++++ GCAF RD
Sbjct:  843 MKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRD 954          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.690e-19
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G+VVRL+K++YGLKQ  R +  RLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G     ++++AAL     T   GE+K++ GCAF RD
Sbjct:  295 MKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRD 406          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.320e-19
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G+VVRL+K++YGLKQ  R + KRLV   ++IG  QS SDPCV R      V  ++ +HVDD++ +G +   + ++AAL     T   GE++++ GCAF RD
Sbjct:  110 MKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSLAEVVVAALGDFLPTKSLGEVRFFLGCAFVRD 221          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.680e-18
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD
Sbjct:  341 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRD 452          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.740e-18
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD
Sbjct:  546 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRD 657          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.750e-18
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD
Sbjct:  610 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRD 721          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.750e-18
Identity = 49/112 (43.75%), Postives = 68/112 (60.71%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVE---KIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRD 108
            MKLP GC    G++VRL+K++YGLKQ  R + KRLV    +IG  QS SDPCV R      V  I+ +HVDD++ +G     + ++ AL     T   GE++++ GCAF RD
Sbjct:  754 MKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRD 865          
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.770e-18
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 0
Query:    1 MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLV---EKIGMAQSKSDPCVFRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMR-GELKWYPGCAFWRDMV 110
            ++LP GC    G+VVRL +++YGLKQ  R W   L+   + +G     +D CV R+ + GVV M++ +HVDD+   G    CD     L         GEL+WY GC F+RD V
Sbjct:  698 IRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVDLNRYVPISNLGELRWYAGCRFFRDTV 811          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55870.13101.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J769_9PHAE3.010e-1940.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KKK1_9PHAE5.820e-1944.64Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE5.920e-1944.64Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE7.690e-1944.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQD0_9PHAE8.320e-1944.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE2.680e-1843.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE2.740e-1843.75CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE2.750e-1843.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE2.750e-1843.75CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMP2_9PHAE2.770e-1839.47Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..92
e-value: 2.6E-10
score: 40.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55870contigH-paniculata_contig55870:479..844 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55870.13101.1mRNA_H-paniculata_contig55870.13101.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig55870 86..1042 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig55870.13101.1 ID=prot_H-paniculata_contig55870.13101.1|Name=mRNA_H-paniculata_contig55870.13101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MKLPEGCRDKWGRVVRLSKAIYGLKQGGRMWSKRLVEKIGMAQSKSDPCV
FRVEKRGVVDMIMCVHVDDMIVSGKSVECDSLLAALKAEFQTMRGELKWY
PGCAFWRDMVRSCPHHATDIH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2