mRNA_H-paniculata_contig5577.13085.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5577.13085.1
Unique NamemRNA_H-paniculata_contig5577.13085.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5577.13085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5577contigH-paniculata_contig5577:1544..2230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.4945269-CDS-H-paniculata_contig5577:1543..19661622930588.4945269-CDS-H-paniculata_contig5577:1543..1966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 1544..1966 +
1691481361.078226-CDS-H-paniculata_contig5577:1543..19661691481361.078226-CDS-H-paniculata_contig5577:1543..1966Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5577 1544..1966 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930588.5149877-UTR-H-paniculata_contig5577:1966..22301622930588.5149877-UTR-H-paniculata_contig5577:1966..2230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 1967..2230 +
1691481361.0886421-UTR-H-paniculata_contig5577:1966..22301691481361.0886421-UTR-H-paniculata_contig5577:1966..2230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5577 1967..2230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5577.13085.1prot_H-paniculata_contig5577.13085.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5577 1544..1966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5577.13085.1

>prot_H-paniculata_contig5577.13085.1 ID=prot_H-paniculata_contig5577.13085.1|Name=mRNA_H-paniculata_contig5577.13085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
NNPCNSGNLRTNILFSPFPRQNGRWQLVDSSSTCSSRSSDLRHTSTCGMY
PGLLVNVQKLFAFTKQPHKSPRDRDISACCVSNTSPPSVSQKQTLQHYIQ
SRNDHSSVSCICIMSVSSVMFMHASISLRSSPAARLHPVK*
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mRNA from alignment at H-paniculata_contig5577:1544..2230+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5577.13085.1 ID=mRNA_H-paniculata_contig5577.13085.1|Name=mRNA_H-paniculata_contig5577.13085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at H-paniculata_contig5577:1544..2230+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAACCCCTGCAACAGTGGCAATTTGCGCACCAACATCCTCTTCTCCCC
CTTCCCTCGGCAAAATGGCCGATGGCAGTTGGTTGACTCTTCGTCAACCT
GCTCGAGTCGATCATCTGATCTCCGACACACATCCACGTGCGGCATGTAT
CCTGGACTACTAGTTAATGTACAAAAACTGTTCGCCTTTACGAAACAGCC
ACATAAATCACCCCGCGACAGGGATATTAGTGCATGTTGTGTATCCAACA
CTAGCCCACCGTCAGTCAGTCAAAAACAAACGCTACAACACTACATCCAG
AGTCGAAACGATCACTCGTCTGTCTCCTGTATATGTATCATGTCTGTGTC
ATCAGTCATGTTTATGCATGCATCAATTTCGTTACGCTCTTCACCCGCCG
CCCGGTTACACCCCGTCAAATAGTGCAGGATACATGCTGTGTATGGGTGA
ATGTCAGAGATCTGGTTGACAAAGTCGAGCAAATGGTACGAGCTGTCAAC
GGTCATTTTGCCGAGGGAGGATACTCGCCACTGTTGCAGAAGTTGTTGGT
TCTGACTTCACGTATAATTCGGTCAGCTTCAGGTAATAATTGCCCACGTC
CAGTTGTAATAGGCTCTAAGGAAAAATAGAAATTCGGGTTATACTGACGT
GCACTTCGGACATAGTCACGTATTTGGGCGGCGCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig5577:1544..2230+

>mRNA_H-paniculata_contig5577.13085.1 ID=mRNA_H-paniculata_contig5577.13085.1|Name=mRNA_H-paniculata_contig5577.13085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig5577:1544..2230+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACAACCCCTGCAACAGTGGCAATTTGCGCACCAACATCCTCTTCTCCCC
CTTCCCTCGGCAAAATGGCCGATGGCAGTTGGTTGACTCTTCGTCAACCT
GCTCGAGTCGATCATCTGATCTCCGACACACATCCACGTGCGGCATGTAT
CCTGGACTACTAGTTAATGTACAAAAACTGTTCGCCTTTACGAAACAGCC
ACATAAATCACCCCGCGACAGGGATATTAGTGCATGTTGTGTATCCAACA
CTAGCCCACCGTCAGTCAGTCAAAAACAAACGCTACAACACTACATCCAG
AGTCGAAACGATCACTCGTCTGTCTCCTGTATATGTATCATGTCTGTGTC
ATCAGTCATGTTTATGCATGCATCAATTTCGTTACGCTCTTCACCCGCCG
CCCGGTTACACCCCGTCAAATAGAACAACCCCTGCAACAGTGGCAATTTG
CGCACCAACATCCTCTTCTCCCCCTTCCCTCGGCAAAATGGCCGATGGCA
GTTGGTTGACTCTTCGTCAACCTGCTCGAGTCGATCATCTGATCTCCGAC
ACACATCCACGTGCGGCATGTATCCTGGACTACTAGTTAATGTACAAAAA
CTGTTCGCCTTTACGAAACAGCCACATAAATCACCCCGCGACAGGGATAT
TAGTGCATGTTGTGTATCCAACACTAGCCCACCGTCAGTCAGTCAAAAAC
AAACGCTACAACACTACATCCAGAGTCGAAACGATCACTCGTCTGTCTCC
TGTATATGTATCATGTCTGTGTCATCAGTCATGTTTATGCATGCATCAAT
TTCGTTACGCTCTTCACCCGCCGCCCGGTTACACCCCGTCAAATAG
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