mRNA_H-paniculata_contig5565.13069.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5565.13069.1
Unique NamemRNA_H-paniculata_contig5565.13069.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5565.13069.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.230e-15
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 2 
Query:   11 GDMDPHDDLFLRAETGDPTALMVVGYMYMVGHNEFALERDYVMAEQLFQRAIRGGEVRAYVYLGWMHHHGYIG 229
            GDM   DD  LRAE GDP+A M++GY++MVG  E  +  D+  AEQL   A++ G+   Y YL WMHH+G+IG
Sbjct:  327 GDMAFADDALLRAEAGDPSATMMMGYLHMVGSEEMGITPDFAKAEQLMWEAVKNGDPGGYAYLAWMHHNGHIG 399
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BLAST of mRNA_H-paniculata_contig5565.13069.1 vs. uniprot
Match: A0A6H5KB87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB87_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.690e-15
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:   11 GDMDPHDDLFLRAETGDPTALMVVGYMYMVGHNEFALERDYVMAEQLFQRAIRGGEVRAYVYLGWMHHHGYIGDH 235
            GDM   DD+ LRAE GDP+A M++GY++MVG  E  +  D+  AEQ    A+R G+   Y YL WMHH+GY+G H
Sbjct:  118 GDMAFADDMLLRAEAGDPSATMMMGYLHMVGSEETGITPDFAKAEQ----AVRNGDPGCYAYLAWMHHNGYMGGH 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5565.13069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMU4_ECTSI1.230e-1550.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KB87_9PHAE1.690e-1550.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5565contigH-paniculata_contig5565:59..2859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size524
Cds size507
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5565.13069.1prot_H-paniculata_contig5565.13069.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5565 75..2859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.72813-UTR-H-paniculata_contig5565:58..741622930586.72813-UTR-H-paniculata_contig5565:58..74Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5565 59..74 +
1691481360.2747505-UTR-H-paniculata_contig5565:58..741691481360.2747505-UTR-H-paniculata_contig5565:58..74Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5565 59..74 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930586.7500644-CDS-H-paniculata_contig5565:74..1191622930586.7500644-CDS-H-paniculata_contig5565:74..119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5565 75..119 +
1691481360.2828467-CDS-H-paniculata_contig5565:74..1191691481360.2828467-CDS-H-paniculata_contig5565:74..119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5565 75..119 +
1622930586.7675474-CDS-H-paniculata_contig5565:474..5611622930586.7675474-CDS-H-paniculata_contig5565:474..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5565 475..561 +
1691481360.2903023-CDS-H-paniculata_contig5565:474..5611691481360.2903023-CDS-H-paniculata_contig5565:474..561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5565 475..561 +
1622930586.78028-CDS-H-paniculata_contig5565:2484..28591622930586.78028-CDS-H-paniculata_contig5565:2484..2859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5565 2485..2859 +
1691481360.298107-CDS-H-paniculata_contig5565:2484..28591691481360.298107-CDS-H-paniculata_contig5565:2484..2859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5565 2485..2859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5565.13069.1

>prot_H-paniculata_contig5565.13069.1 ID=prot_H-paniculata_contig5565.13069.1|Name=mRNA_H-paniculata_contig5565.13069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
MDPHDDLFLRAETGDPTALMVVGYMYMVGHNEFALERDYVMAEQLFQRAI
RGGEVRAYVYLGWMHHHGYIGDHHHHDEGNKTPGAVNPDKEGQQQHSQSA
VYKTQVLQQLESLYGDKGARVPETEAEMQRYAAKRWGEWVLAKDRDTRKK
KRKPSRVYKFKGGEPLDTL
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mRNA from alignment at H-paniculata_contig5565:59..2859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5565.13069.1 ID=mRNA_H-paniculata_contig5565.13069.1|Name=mRNA_H-paniculata_contig5565.13069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2801bp|location=Sequence derived from alignment at H-paniculata_contig5565:59..2859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTTTCCTGGAGACATGGATCCTCATGACGACTTGTTTCTGCGTGCGG
AGACGGGGGATGTGAGTTACTTGCTTAGTTGGTTGCTTGGCGAGGAGTTG
AACAGTGTTGTTCTGGGGGGGGCGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTATTTGTTTTATTTTTATGCGAATAGGCAAAA
CACTCTGTGTTGCTCCATTTTCATCAGTATTATGTTTTACTTTTTGTTTT
AACAAGAAAATATATAATGTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCATTTGCAATATCTGCCTATCTTTTTTTGTTCTTGCGTCCTGCACTC
GGTCGGCGGGGGATATGCGTGCGCGAACCGACGACGATCTACCCGCAATC
GTGGTGATGGTTTCAGCCCACAGCGCTCATGGTGGTGGGGTACATGTACA
TGGTTGGCCACAACGAATTTGCTTTGGAGCGAGACTACGTAATGGCCGAA
CAGGTACAATGCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCATGCGT
GCTTCCGTCCTGGGGGTGCGTAGTCCTCATTTTTTATGTTTTGTTTGTGT
GTTGGTCATACTCTGGTGTCAACTGTTGTTTGTGTGTCTTGTTCATGCTA
TTTACATATGTGACCTAAAATGGAAAAACGAGGTTGAAATTGTTTACATG
TATCAAGCTGCTGGTTCACAGGAGCGCTCAGGTAAGGCGTCAACGTTGCA
TTTCTCACGCCGTTTTTTTCGAATGAGGACCTGACATTCTGATTCTAGAT
GTGTTTCTTTAGTTACTCGGAATTCCGGAGTTCGCCGAGTGGTGGTCCCT
ATTTTTGCGTTTTGAATTTTTTTAGTCGGTTTCATGGGGCCCCTGTTTTT
TTTTGTTTTTTTTTCTTATATCGCCTTGGGGGCACCAGTAAAAACCGGTG
ACCAAAAATAACGAGAAAAATATATTTTATGCAAGAGAATGCAAGCGACC
TCGAGAAATACGTGAAGAGATCATGTGTTGAAAAAAATTGAAAATTTCTT
GGGGTGTTCCCGAGATCGGTATTGCACGGTACATTTTTCGGAACCGGGTC
CGAAATGAGAGTCATTGGGAAAAAAAATGGTTCTAGCAGTATCGCGATGA
AGATAGACTCTGTGGGAAACGATGCCTCGGCGTGTTTTTGGAAGTTTAAG
TGCTGATCATGATGTTATCCTCAAAAATACCGTGCACGGTACTTTACCGC
GGTAAACCAAATTTTGAATACAATACCGTGAGAAGTTACCGTAGTGATAA
GAGGGTATTCACTAGGACGTTGGAAACACTAACGCCTAGATGTGGTTCCC
GCGGAGTGTTGCTTTATTGTGGTGCCTCTGGAACTTTTTCTTCTTTTTTT
TCTTAATAGTACCTCTTTCGAGGGCTGTTTCATAAATTCCGAAGAAATAT
CGCGCAATTTTCGAGAACAATCCTAATTTTAGATTTCAAGTCCTATCCAC
TAAACAAGACTTAATCATCGCACGTGTGATACGTGGATTAAAAAAATATA
TATAATGGCTCGGTTATATATATATTATGCCATTTTTCAATTTATGCGGG
TGTAATTGCGAGTCACGTGTTCCGTTCGTGAAATTTCTCCTTGATGCCAT
CTTTTTGGATGTACACAAGTAGAACCTGAAATTTTATTCGATGGCGTATG
TGTTCATTCCTTACTGAATTCCTCGAGATCTCGTGTGACTAACCGGTGCA
CATAAACCATAGTAGTGCACCATTGCTTCCGCTTTGGATGTGACTAAGCT
TGAGCTTGAGTATCGTGCTACCCCTGGCCCTTGTTGGAAATTACAGCGTT
GTCGCCGCCACATGTATGTGTGTTGTGCTGCTCCATCATCGTGAAGGCCG
TAATATTCAACTCTTTCACACGTCAGACGGATCGGATCGTACATAGATCG
CACCCACCATTTGTTACGTGTAGATCGCCTGGTTCGTATACATGGTGTTT
TATCCGTTCGAAGGCTGGGAAATGAAGACTGACGACTCTATTACCGATAT
AATTAGACTTAGAAAGGTCCACTCGTCATCACCTACACATTGCCCCCATG
CTCGCTCCCCCTCTTTTTTTTTTTCATATTCATTCTCAGTCTCTTCTGTT
TTTTGGGGGGGTTTTTTTCCACCTCCTGCTTTTTTTTTCTAAAGATAAAT
AGAATCAAACAGTATCCGATTTTCGATGACCTGCAGGTTTGTTCAATCTC
CAGATATACATGAATTTAACGGTTGTGGCCCGAGTTGGACCCTTGTAGCC
CAGTGCGTCAATATTAACTATCGCCGCCGCCACGGATTGATGTTGCTTCG
CGTCTCCCGACTACTCCGTGACAACACATGGATAACGAATATCATCATCC
TTGTCGTCACGATGATTGACGATCAGCTCTTTCAACGGGCCATTAGGGGG
GGTGAAGTGCGAGCCTACGTCTACCTCGGCTGGATGCACCACCACGGCTA
CATCGGCGACCACCACCACCACGATGAGGGCAATAAGACGCCGGGGGCCG
TCAATCCGGACAAGGAAGGGCAGCAGCAGCACTCCCAATCAGCAGTCTAC
AAGACGCAAGTACTGCAACAACTGGAGAGCCTCTACGGAGACAAAGGCGC
TAGAGTGCCCGAGACCGAGGCGGAGATGCAGAGGTACGCGGCCAAAAGGT
GGGGAGAATGGGTTCTCGCCAAGGACCGAGATACGCGCAAAAAAAAAAGA
AAACCTTCGAGAGTGTATAAGTTCAAGGGAGGAGAACCCTTGGACACCCT
C
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Coding sequence (CDS) from alignment at H-paniculata_contig5565:59..2859+

>mRNA_H-paniculata_contig5565.13069.1 ID=mRNA_H-paniculata_contig5565.13069.1|Name=mRNA_H-paniculata_contig5565.13069.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig5565:59..2859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCTCATGACGACTTGTTTCTGCGTGCGGAGACGGGGGATATGGA
TCCTCATGACGACTTGTTTCTGCGTGCGGAGACGGGGGATCCCACAGCGC
TCATGGTGGTGGGGTACATGTACATGGTTGGCCACAACGAATTTGCTTTG
GAGCGAGACTACGTAATGGCCGAACAGCCCACAGCGCTCATGGTGGTGGG
GTACATGTACATGGTTGGCCACAACGAATTTGCTTTGGAGCGAGACTACG
TAATGGCCGAACAGCTCTTTCAACGGGCCATTAGGGGGGGTGAAGTGCGA
GCCTACGTCTACCTCGGCTGGATGCACCACCACGGCTACATCGGCGACCA
CCACCACCACGATGAGGGCAATAAGACGCCGGGGGCCGTCAATCCGGACA
AGGAAGGGCAGCAGCAGCACTCCCAATCAGCAGTCTACAAGACGCAAGTA
CTGCAACAACTGGAGAGCCTCTACGGAGACAAAGGCGCTAGAGTGCCCGA
GACCGAGGCGGAGATGCAGAGGTACGCGGCCAAAAGGTGGGGAGAATGGG
TTCTCGCCAAGGACCGAGATACGCGCAAAAAAAAAAGAAAACCTTCGAGA
GTGTATAAGTTCAAGGGAGGAGAACCCTTGGACACCCTCCTCTTTCAACG
GGCCATTAGGGGGGGTGAAGTGCGAGCCTACGTCTACCTCGGCTGGATGC
ACCACCACGGCTACATCGGCGACCACCACCACCACGATGAGGGCAATAAG
ACGCCGGGGGCCGTCAATCCGGACAAGGAAGGGCAGCAGCAGCACTCCCA
ATCAGCAGTCTACAAGACGCAAGTACTGCAACAACTGGAGAGCCTCTACG
GAGACAAAGGCGCTAGAGTGCCCGAGACCGAGGCGGAGATGCAGAGGTAC
GCGGCCAAAAGGTGGGGAGAATGGGTTCTCGCCAAGGACCGAGATACGCG
CAAAAAAAAAAGAAAACCTTCGAGAGTGTATAAGTTCAAGGGAGGAGAAC
CCTTGGACACCCTC
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