mRNA_H-paniculata_contig5553.13052.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5553.13052.1
Unique NamemRNA_H-paniculata_contig5553.13052.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5553.13052.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 4.470e-5
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   25 TRLQSDKSLNSLGNLNAAQERMSKKRRRKGFDTTRREWLQSTILTDREKRCITKSWQKREARVKKRFNEK 234
            ++  + KS NSLG LNA +ER  K++R  G D TR  +   + L+ RE+R + + W KRE ++++ F+++
Sbjct:  115 SQFHTGKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKR 184
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BLAST of mRNA_H-paniculata_contig5553.13052.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 6.170e-5
Identity = 26/64 (40.62%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:   43 KSLNSLGNLNAAQERMSKKRRRKGFDTTRREWLQSTILTDREKRCITKSWQKREARVKKRFNEK 234
            KS NSLG LNA +ER  K++R  G D TR  +   + L+ RE+R + + W KRE ++++ F+++
Sbjct:  111 KSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKR 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5553.13052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUI4_9PHAE4.470e-537.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P7_9PHAE6.170e-540.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5553contigH-paniculata_contig5553:1419..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930584.8126898-CDS-H-paniculata_contig5553:1418..14581622930584.8126898-CDS-H-paniculata_contig5553:1418..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5553 1419..1458 +
1691481359.407138-CDS-H-paniculata_contig5553:1418..14581691481359.407138-CDS-H-paniculata_contig5553:1418..1458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5553 1419..1458 +
1622930584.8343658-CDS-H-paniculata_contig5553:1694..19121622930584.8343658-CDS-H-paniculata_contig5553:1694..1912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5553 1695..1912 +
1691481359.420358-CDS-H-paniculata_contig5553:1694..19121691481359.420358-CDS-H-paniculata_contig5553:1694..1912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5553 1695..1912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5553.13052.1prot_H-paniculata_contig5553.13052.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5553 1419..1912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5553.13052.1

>prot_H-paniculata_contig5553.13052.1 ID=prot_H-paniculata_contig5553.13052.1|Name=mRNA_H-paniculata_contig5553.13052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
SGPAAAASTRLQSDKSLNSLGNLNAAQERMSKKRRRKGFDTTRREWLQST
ILTDREKRCITKSWQKREARVKKRFNEKADPSSPRT
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mRNA from alignment at H-paniculata_contig5553:1419..1913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5553.13052.1 ID=mRNA_H-paniculata_contig5553.13052.1|Name=mRNA_H-paniculata_contig5553.13052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at H-paniculata_contig5553:1419..1913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGGCCAGCGGCAGCAGCGTCGACTCGCCTTCAATCAGGTGGGTCTAC
TGTGACACTGCTGTAACACTGCGGTAAACACTTTTGTAACACTGCTGTAC
ATCCTGCTGTACAATTTGCTGTAACGCTGCTGTAAAATTTGCTGTAACGC
TGCTGTAAAACATGCTGTAAGCACTGCTGTGGCATGCACACACAAATGAT
TGTATCTGTTAATTTTTAACATGGTCTTAATGTCGCCCGATCTCTTCCCC
TTCGCTGCCGCTTTAACTCGCGACAGACAAATCTTTGAACTCCCTTGGCA
ATCTGAATGCCGCACAAGAGAGAATGTCGAAGAAGAGGCGCCGGAAAGGG
TTTGACACCACTAGGAGGGAGTGGCTGCAATCGACGATCCTGACCGATCG
AGAGAAGCGATGCATCACGAAATCTTGGCAGAAGCGTGAGGCGAGAGTCA
AGAAGCGTTTCAACGAGAAGGCAGATCCATCGAGTCCAAGGACCA
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Coding sequence (CDS) from alignment at H-paniculata_contig5553:1419..1913+

>mRNA_H-paniculata_contig5553.13052.1 ID=mRNA_H-paniculata_contig5553.13052.1|Name=mRNA_H-paniculata_contig5553.13052.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig5553:1419..1913+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGGCCAGCGGCAGCAGCGTCGACTCGCCTTCAATCAGTCTGGGCCAG
CGGCAGCAGCGTCGACTCGCCTTCAATCAGACAAATCTTTGAACTCCCTT
GGCAATCTGAATGCCGCACAAGAGAGAATGTCGAAGAAGAGGCGCCGGAA
AGGGTTTGACACCACTAGGAGGGAGTGGCTGCAATCGACGATCCTGACCG
ATCGAGAGAAGCGATGCATCACGAAATCTTGGCAGAAGCGTGAGGCGAGA
GTCAAGAAGCGTTTCAACGAGAAGGCAGATCCATCGAGTCCAAGGACCAC
AAATCTTTGAACTCCCTTGGCAATCTGAATGCCGCACAAGAGAGAATGTC
GAAGAAGAGGCGCCGGAAAGGGTTTGACACCACTAGGAGGGAGTGGCTGC
AATCGACGATCCTGACCGATCGAGAGAAGCGATGCATCACGAAATCTTGG
CAGAAGCGTGAGGCGAGAGTCAAGAAGCGTTTCAACGAGAAGGCAGATCC
ATCGAGTCCAAGGACC
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