mRNA_H-paniculata_contig55476.13041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55476.13041.1
Unique NamemRNA_H-paniculata_contig55476.13041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.340e-66
Identity = 122/250 (48.80%), Postives = 160/250 (64.00%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR LG+E +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+       +      P  WGWS+ A
Sbjct:   66 RRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 315
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 1.180e-65
Identity = 122/250 (48.80%), Postives = 160/250 (64.00%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR LG+E +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+       +      P  WGWS+ A
Sbjct:  143 RRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 392
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BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 1.170e-64
Identity = 121/250 (48.40%), Postives = 158/250 (63.20%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQET-------AEGVPNPRAWGWSLAA 727
            RR LG+E +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+              P  W WS+ A
Sbjct:   89 RRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRLTSDQSTPMIWRWSVHA 338
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.420e-64
Identity = 121/250 (48.40%), Postives = 159/250 (63.60%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR LG+E +LA RCP C      E +TT HAR   R GAQV+ H+PL +A++R    L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+       +    P P  WGWS+ A
Sbjct:   75 RRALGVEEFLAERCPRCHRGREGEIITTVHARTFPRDGAQVNMHKPLKYALSRACNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENTRTRSTSDQPTPTLWGWSVDA 324
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 9.560e-63
Identity = 121/250 (48.40%), Postives = 158/250 (63.20%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR L IE +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRG Q+       +      P  WGWS+ A
Sbjct:  232 RRALEIEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGGQDAENRRTRSTSNQSTPMMWGWSVDA 481
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 1.780e-62
Identity = 116/226 (51.33%), Postives = 152/226 (67.26%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE 676
            RR LG+E +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+
Sbjct:   66 RRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQD 291
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 3.270e-62
Identity = 119/250 (47.60%), Postives = 158/250 (63.20%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR LG+E +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D  A   SEARK  HYA  G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRR+QRY+ AL GRQ+       +      P  WGWS+ A
Sbjct:  241 RRALGVEEFLAERCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYACPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRLQRYKLALHGRQDAENRRTRSTSDQSTPMIWGWSVDA 490
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 4.750e-60
Identity = 120/250 (48.00%), Postives = 160/250 (64.00%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCCG----SEDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR LGIE +LA RCP C      E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+THADPQ+  HL  GS T D + +  SEARK  HY+R G VS  ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+       +      P  WGWS+ A
Sbjct:  988 RRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTEIQASEARKRQHYSRPGHVSLDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSNQSTPMIWGWSVDA 1237
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 5.360e-56
Identity = 110/227 (48.46%), Postives = 147/227 (64.76%), Query Frame = 2 
Query:   68 EDVTTRHARICHRAGAQVDQHQPLLHAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            E +TT HAR C R GAQV+ H+PL +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR +G+L+D+THADPQ+  HL  GS T D  A   SEARK  HYAR G VSF ER FKLT  AVESFGRLG+   E ++++A++ VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+       +      P  WGWS+ A
Sbjct:  481 EIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLCVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNEGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGRQDAENRRTRSTSDQSTPMIWGWSVDA 707
[Close]
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.580e-51
Identity = 118/277 (42.60%), Postives = 159/277 (57.40%), Query Frame = 2 
Query:   11 RRFLGIEPYLAARCPCC--GSED--VTTRHARICHRAGAQVDQHQPLL---------------------------HAVTRPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLIDITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFKLTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVISVTTQVAISRRVQRYR*ALRGRQE-------TAEGVPNPRAWGWSLAA 727
            RR LG+E +LA RCP C  G E   +TT  AR C R GAQV+ H+PL                            +A++R L  L  +  +E G P T +R+  MDI++  G L +     YR KG+L+D+T+ADPQ+  HL  GS T D +A   SEARK  HYAR G  +F+ER  KLT  AVESFGRLG+   E ++++A+  VG ++G  ++ KGV  E + +++SV TQVAISRRVQRY+ ALRGRQ+       +      P  WGWS+ A
Sbjct:  635 RRALGVEEFLAERCPRCHKGREGQIITTVQARTCSRDGAQVNMHEPLKXXXXXXXXXXXXXXXXXXXXXXXXXXKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTNADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGH-AFVERSLKLTTIAVESFGRLGEEGYEFIDELATYAVGGRDGGTMALKGVFNERLLQIVSVATQVAISRRVQRYKLALRGRQDADNRRTRSTSNQSTPMIWGWSVDA 910
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55476.13041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPW7_9PHAE1.340e-6648.80Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE1.180e-6548.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K198_9PHAE1.170e-6448.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN7_9PHAE2.420e-6448.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE9.560e-6348.40Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE1.780e-6251.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQ53_9PHAE3.270e-6247.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE4.750e-6048.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE5.360e-5648.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLG6_9PHAE2.580e-5142.60Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55476contigH-paniculata_contig55476:185..1110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size926
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55476.13041.1prot_H-paniculata_contig55476.13041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55476 189..839 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.0074875-UTR-H-paniculata_contig55476:184..1881622930583.0074875-UTR-H-paniculata_contig55476:184..188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55476 185..188 +
1691481358.5866668-UTR-H-paniculata_contig55476:184..1881691481358.5866668-UTR-H-paniculata_contig55476:184..188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55476 185..188 +
1622930583.043009-UTR-H-paniculata_contig55476:839..11101622930583.043009-UTR-H-paniculata_contig55476:839..1110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55476 840..1110 +
1691481358.6159937-UTR-H-paniculata_contig55476:839..11101691481358.6159937-UTR-H-paniculata_contig55476:839..1110Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig55476 840..1110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930583.0223389-CDS-H-paniculata_contig55476:188..8391622930583.0223389-CDS-H-paniculata_contig55476:188..839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55476 189..839 +
1691481358.6035244-CDS-H-paniculata_contig55476:188..8391691481358.6035244-CDS-H-paniculata_contig55476:188..839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55476 189..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55476.13041.1

>prot_H-paniculata_contig55476.13041.1 ID=prot_H-paniculata_contig55476.13041.1|Name=mRNA_H-paniculata_contig55476.13041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MERRFLGIEPYLAARCPCCGSEDVTTRHARICHRAGAQVDQHQPLLHAVT
RPLKRLGTRSTMEDGVPSTADRDYRMDIIVPAGELRDVPINPYRVKGLLI
DITHADPQSAGHLERGSVTIDSSAVAISEARKSAHYARRGRVSFIERCFK
LTPPAVESFGRLGKCREELLEQVASNVVGEQEGDEVSQKGVLLEWMKEVI
SVTTQVAISRRVQRYR*
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mRNA from alignment at H-paniculata_contig55476:185..1110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55476.13041.1 ID=mRNA_H-paniculata_contig55476.13041.1|Name=mRNA_H-paniculata_contig55476.13041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=926bp|location=Sequence derived from alignment at H-paniculata_contig55476:185..1110+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCATGGAGCGGAGGTTTCTTGGCATTGAGCCCTATTTAGCCGCTCGAT
GCCCATGCTGCGGATCGGAGGACGTCACCACACGCCACGCCCGTATTTGC
CATCGAGCGGGGGCGCAGGTAGACCAACACCAGCCGCTCCTGCACGCGGT
CACGCGACCCCTTAAGCGACTGGGCACCAGGAGCACGATGGAGGATGGAG
TCCCGTCTACGGCGGACCGAGACTACCGGATGGACATCATCGTCCCGGCA
GGAGAGCTCCGAGATGTCCCCATTAACCCCTACCGCGTCAAGGGTCTCCT
GATCGACATCACGCACGCAGATCCCCAGTCAGCAGGGCACCTCGAGCGCG
GGAGCGTTACCATCGACAGCTCAGCCGTCGCCATTTCCGAGGCGCGCAAA
AGCGCGCACTACGCTCGAAGAGGACGCGTGTCCTTCATCGAGCGTTGTTT
CAAACTTACCCCCCCCGCGGTGGAAAGCTTTGGGCGTCTGGGGAAGTGCA
GAGAGGAGCTTCTTGAGCAGGTGGCGTCCAATGTGGTGGGGGAACAGGAG
GGCGACGAGGTTTCGCAAAAAGGAGTACTGCTAGAGTGGATGAAAGAAGT
CATTTCGGTTACTACACAGGTGGCTATCTCGAGACGGGTGCAGAGATACA
GATAGGCTCTGCGGGGAAGGCAAGAAACAGCAGAAGGGGTCCCCAATCCT
CGAGCGTGGGGATGGAGTTTAGCGGCGCCGTAGTGTTCCATCACGACGCT
TTATCATATTTCGATTGCACGTATGTCATCAATTAAATGGCGGAGGGAAT
TCGCTATACGGCGTATTTTGAACTGGTAACAGTAAGTTACATAGTTAACA
GCATCTTGGTGAAATGGGAACTCAACTTTGAGATGGGGACTCTGGGTTAT
ATTGGAAATAGGCTGTATCCTGAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig55476:185..1110+

>mRNA_H-paniculata_contig55476.13041.1 ID=mRNA_H-paniculata_contig55476.13041.1|Name=mRNA_H-paniculata_contig55476.13041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig55476:185..1110+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGGAGGTTTCTTGGCATTGAGCCCTATTTAGCCGCTCGATGCCC
ATGCTGCGGATCGGAGGACGTCACCACACGCCACGCCCGTATTTGCCATC
GAGCGGGGGCGCAGGTAGACCAACACCAGCCGCTCCTGCACGCGGTCACG
CGACCCCTTAAGCGACTGGGCACCAGGAGCACGATGGAGGATGGAGTCCC
GTCTACGGCGGACCGAGACTACCGGATGGACATCATCGTCCCGGCAGGAG
AGCTCCGAGATGTCCCCATTAACCCCTACCGCGTCAAGGGTCTCCTGATC
GACATCACGCACGCAGATCCCCAGTCAGCAGGGCACCTCGAGCGCGGGAG
CGTTACCATCGACAGCTCAGCCGTCGCCATTTCCGAGGCGCGCAAAAGCG
CGCACTACGCTCGAAGAGGACGCGTGTCCTTCATCGAGCGTTGTTTCAAA
CTTACCCCCCCCGCGGTGGAAAGCTTTGGGCGTCTGGGGAAGTGCAGAGA
GGAGCTTCTTGAGCAGGTGGCGTCCAATGTGGTGGGGGAACAGGAGGGCG
ACGAGGTTTCGCAAAAAGGAGTACTGCTAGAGTGGATGAAAGAAGTCATT
TCGGTTACTACACAGGTGGCTATCTCGAGACGGGTGCAGAGATACAGATA
GATGGAGCGGAGGTTTCTTGGCATTGAGCCCTATTTAGCCGCTCGATGCC
CATGCTGCGGATCGGAGGACGTCACCACACGCCACGCCCGTATTTGCCAT
CGAGCGGGGGCGCAGGTAGACCAACACCAGCCGCTCCTGCACGCGGTCAC
GCGACCCCTTAAGCGACTGGGCACCAGGAGCACGATGGAGGATGGAGTCC
CGTCTACGGCGGACCGAGACTACCGGATGGACATCATCGTCCCGGCAGGA
GAGCTCCGAGATGTCCCCATTAACCCCTACCGCGTCAAGGGTCTCCTGAT
CGACATCACGCACGCAGATCCCCAGTCAGCAGGGCACCTCGAGCGCGGGA
GCGTTACCATCGACAGCTCAGCCGTCGCCATTTCCGAGGCGCGCAAAAGC
GCGCACTACGCTCGAAGAGGACGCGTGTCCTTCATCGAGCGTTGTTTCAA
ACTTACCCCCCCCGCGGTGGAAAGCTTTGGGCGTCTGGGGAAGTGCAGAG
AGGAGCTTCTTGAGCAGGTGGCGTCCAATGTGGTGGGGGAACAGGAGGGC
GACGAGGTTTCGCAAAAAGGAGTACTGCTAGAGTGGATGAAAGAAGTCAT
TTCGGTTACTACACAGGTGGCTATCTCGAGACGGGTGCAGAGATACAGAT
AG
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