mRNA_H-paniculata_contig5544.13032.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE) HSP 1 Score: 212 bits (539), Expect = 6.030e-63 Identity = 116/208 (55.77%), Postives = 137/208 (65.87%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVWVQG-GGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
+V+A +GQ V SREN T+V TINAAG V P + F GQR WV GPPGA Y TESSFM G VF+ Y+K FH+ + D DGKPHVLVLDGHA H+T D+I LA+SLNI L QLPSH S+ITQPL V F FKK + V+Q+FP RNGG +P K D +I A+ S FTP ASF GA LWPVD +RAL+ L
Sbjct: 196 RVMAERGQPVVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNGPPGAYYDCTESSFMCGEVFIKYIKNFHKQLGDRNLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRL 403
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE) HSP 1 Score: 202 bits (514), Expect = 1.070e-62 Identity = 105/200 (52.50%), Postives = 136/200 (68.00%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVWVQG-GGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVD 600
KVIA GQ VG NSRENVTVV TI+ AG P + + GQR+QA WV+G GPP A A T+SSFM+G FV+Y++ FH ++D +G PHVL LDGHA H+T++++ LA LNI L+Q+PSHSS++ QPL V SF FK+ IT VL +FP RNGG +P K D + ++ DA+ F+ Q +SF GA LWPVD
Sbjct: 2 KVIAESGQKVVGAMRSNSRENVTVVVTISTAGATLAPWIIYKGQRLQADWVEGRNGPPNARLAVTDSSFMQGIAFVNYVRDFHRQLLDRDLINGTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFVGAGLWPVD 201
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE) HSP 1 Score: 205 bits (521), Expect = 1.620e-61 Identity = 110/208 (52.88%), Postives = 138/208 (66.35%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVW-VQGGGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
K A GQ V + NSREN TVV TI+A G P + F GQR+Q W + GP A Y T+SSFM+G VF+ Y+K FH+ + D DGKPH+LVLDGHA H++++ I LAM LNI LF+LPSH+S+ITQPL VV+F FKK +T VLQ + NGG +P+K D VI A+Q+ TP + ASF GA LWPVD+DRAL L
Sbjct: 2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRL 209
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE) HSP 1 Score: 206 bits (524), Expect = 2.400e-61 Identity = 107/208 (51.44%), Postives = 142/208 (68.27%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVWVQG-GGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
KVI GQ G NSRENVTVV TI+AAG P + + GQR+QA WV+G GPP A A +SSFM+G+VFV+Y++ FH ++D +G PHVLVLDGHA H+T++++ LA LNI L+Q+PSHSS++ QPL V SF FK+ IT VL +FP RNGG +P K D + ++ DA+ F+ + +SF GA LWPVD +RA+ L
Sbjct: 182 KVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRL 389
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE) HSP 1 Score: 210 bits (534), Expect = 4.800e-61 Identity = 110/208 (52.88%), Postives = 144/208 (69.23%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVWVQG-GGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
KVIA GQ VG NSR+NVTVV TI+AAG P + + GQR+QA WV+G GPP A A T+SSFM+G+VFV+Y++ FH ++D +G PHVLVLDGHA H+T++++ LA LNI L+Q+PSHSS++ QPL V SF FK IT VL +FP RNGG +P K D + ++ DA+ F+ Q +SF GA LWPVD +RA+ L
Sbjct: 190 KVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRL 397
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI) HSP 1 Score: 209 bits (533), Expect = 1.770e-60 Identity = 110/208 (52.88%), Postives = 143/208 (68.75%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVWVQG-GGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
K IA GQ VG NSRE VTVV TI+AAG P + + GQR+QA WV+G GPP A A T+SSFM+G+VFV+Y++ FH ++D +G PHVLVLDGHA H+T+++I LA LNI L+Q+PSHSS++ QPL V SF FK+ IT VL +FP RNGG +P K D + ++ DA+ F+ Q +SF GA LWPVD +RA+ L
Sbjct: 182 KAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRL 389
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE) HSP 1 Score: 200 bits (508), Expect = 7.430e-60 Identity = 109/208 (52.40%), Postives = 135/208 (64.90%), Query Frame = 1
Query: 4 KVIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVW-VQGGGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
K A GQ V + NSREN TVV TI+A G P + F GQR+Q W + GP A Y T+SSFM+G VF+ Y K FH+ + D DGKPH LVLD HA ++++++I LAM LNI LFQLPSH+S+ITQPL VV+F FKK +T VLQ + NGG +P+K D VI A+Q FTP + ASF G LWPVD+DRAL L
Sbjct: 2 KTFAEAGQTVVESMRSNSRENTTVVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVLDEHASYVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSFTPERNKASFGGVGLWPVDMDRALTRL 209
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5KAG8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG8_9PHAE) HSP 1 Score: 195 bits (496), Expect = 5.880e-59 Identity = 103/191 (53.93%), Postives = 125/191 (65.45%), Query Frame = 1
Query: 55 SRENVTVVATINAAGEVTPPLLSFTGQRVQAVW-VQGGGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
SREN T+V T+NAAG V P + F GQR W V GPPGA Y TESSFM G VF+ Y+ FHE + DGKPHVLVLDGHA H++ +++ LA SLNI + QLPSH S+ITQPL V F FKK +T +Q+FP +GG +P K D VI A+ + FTP ASF GA LWPVD +RAL+ L
Sbjct: 5 SRENCTIVTTVNAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHVVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGASLWPVDKERALSRL 195
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE) HSP 1 Score: 201 bits (512), Expect = 1.370e-58 Identity = 109/207 (52.66%), Postives = 131/207 (63.29%), Query Frame = 1
Query: 7 VIAGKGQNFVGTKPFNSRENVTVVATINAAGEVTPPLLSFTGQRVQAVW-VQGGGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
V A +GQ V SREN T++ TINAAG V P + F GQR W V GPPGA Y TESSFM G VF+ Y+ FHE + DGKPHVLVLDGHA H++ +++ LA SLNI L QLPSH S+ITQPL V F FKK +T +Q+FP +GG +P K D VI A+ + FTP ASF GA LWPVD +RAL+ L
Sbjct: 109 VYAERGQPVVPQMRSTSRENCTIITTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL 315
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Match: A0A6H5J9Z8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z8_9PHAE) HSP 1 Score: 196 bits (499), Expect = 1.670e-58 Identity = 105/191 (54.97%), Postives = 125/191 (65.45%), Query Frame = 1
Query: 55 SRENVTVVATINAAGEVTPPLLSFTGQRVQAVW-VQGGGPPGALYASTESSFMKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLNIELFQLPSHSSYITQPLAVVSFRIFKKGIT*VLQSFPRRNGGTIPVKLDRVEVIRDAFQSIFTPSQVNASFEGAVLWPVDIDRALNSL 624
SREN T+V TINAAG V P + F GQR W V GPPGA Y TESSFM G VF+ Y+ FHE + DGKPHVLVLDGHA H++ +++ LA SLNI L QLPSH S+ITQPL V F FKK +T +Q+FP +GG +P K D VI A+ + FTP ASF GA LWPVD +RAL+ L
Sbjct: 5 SRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5544.13032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5544.13032.1 >prot_H-paniculata_contig5544.13032.1 ID=prot_H-paniculata_contig5544.13032.1|Name=mRNA_H-paniculata_contig5544.13032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp MKGSVFVSYMKAFHEHIVDTVKDDGKPHVLVLDGHAFHLTFDLITLAMSLback to top mRNA from alignment at H-paniculata_contig5544:296..919+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5544.13032.1 ID=mRNA_H-paniculata_contig5544.13032.1|Name=mRNA_H-paniculata_contig5544.13032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=624bp|location=Sequence derived from alignment at H-paniculata_contig5544:296..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5544:296..919+ >mRNA_H-paniculata_contig5544.13032.1 ID=mRNA_H-paniculata_contig5544.13032.1|Name=mRNA_H-paniculata_contig5544.13032.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig5544:296..919+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |