mRNA_H-paniculata_contig5528.13008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5528.13008.1
Unique NamemRNA_H-paniculata_contig5528.13008.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5528.13008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5528contigH-paniculata_contig5528:5684..11871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size866
Cds size864
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5528.13008.1prot_H-paniculata_contig5528.13008.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5528 5686..11871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930578.8397636-CDS-H-paniculata_contig5528:5685..59361622930578.8397636-CDS-H-paniculata_contig5528:5685..5936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 5686..5936 -
1691481356.6997821-CDS-H-paniculata_contig5528:5685..59361691481356.6997821-CDS-H-paniculata_contig5528:5685..5936Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 5686..5936 -
1622930578.8732045-CDS-H-paniculata_contig5528:8231..85891622930578.8732045-CDS-H-paniculata_contig5528:8231..8589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 8232..8589 -
1691481356.711621-CDS-H-paniculata_contig5528:8231..85891691481356.711621-CDS-H-paniculata_contig5528:8231..8589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 8232..8589 -
1622930578.8887677-CDS-H-paniculata_contig5528:11616..118711622930578.8887677-CDS-H-paniculata_contig5528:11616..11871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 11617..11871 -
1691481356.7246323-CDS-H-paniculata_contig5528:11616..118711691481356.7246323-CDS-H-paniculata_contig5528:11616..11871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5528 11617..11871 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5528.13008.1

>prot_H-paniculata_contig5528.13008.1 ID=prot_H-paniculata_contig5528.13008.1|Name=mRNA_H-paniculata_contig5528.13008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=288bp
GSGWPRRPSAKKKDAAIGSYGRGGASDTSSESAFVADAAAAGAAAAAGAA
AAAGAAAAAGAAAAAGNNLIAALGGGSIGELRMSMSDRIRGSKSHGVIEH
TLPRRRSFSLSDDSLAGDHSFSGITINRGGNRGGVGGGDGGSGRGSQASK
THNFVVTLMDSSSPSSPGDGLSSAGITPVPPAGASGRVVDTAAAVLKRRS
SGDDDRNGGTGGSAGRLRQSKQRSRPSRLALENDKYNADDEDDDDIDDYV
DDDDEVLLGDRNHASLEEMEDETSIFKGNGHIQGGGGG
back to top

mRNA from alignment at H-paniculata_contig5528:5684..11871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5528.13008.1 ID=mRNA_H-paniculata_contig5528.13008.1|Name=mRNA_H-paniculata_contig5528.13008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6188bp|location=Sequence derived from alignment at H-paniculata_contig5528:5684..11871- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGTGGGTGGCCAAGGCGGCCTTCGGCGAAGAAAAAAGACGCGGCGAT
TGGGAGTTATGGTCGAGGAGGTGCCTCCGACACGAGCTCGGAAAGTGCGT
TTGTGGCTGACGCTGCGGCTGCTGGTGCTGCTGCGGCTGCTGGTGCTGCT
GCGGCTGCTGGTGCTGCTGCGGCCGCTGGTGCTGCTGCGGCTGCTGGTAA
CAACCTGATTGCTGCGCTTGGAGGTGGCTCTATCGGCGAATTGCGGATGT
CGATGGTGAGTTTTTATTGGTAAAAGGTGGAGGTCGGTCAGATACCCAAC
ATACCGTAGATTGTATGCTACCCAAGGTAGCATACAACGAATACCCCGAG
CGATGCATGTTTTATTGGAATTTGGTTTTCTCGAAGATAAGAAGGAAAAC
TTTCCTGCGTTGGTTATTTAGTAACAATTGGGCTCGTCTGGAGACACATG
TGTCTCGACGAGATCTTTCCAAAGAACCTGTTCCATTTTTTCGCTCGCGC
CGTATTTTCCGAGGAAATATTGTTAAAAAGAAGTGATCACATGCAGTATT
TCTTGTGTATGGGAGCCCCTACTGGGGGAGGGTCAAGGGAGTACTCGTGA
TTATGCATACCGTAGTCTGCCGGCTGTTGACATTGCATCCCTATAATGCC
GGCACGGAGCATGCCAGATTTCGCCGGCTAGGGTGTATTCGCAAGGGTGG
TACCAGCCACCACTCATCGCCTTTGCGTTGCTACGACAACTGGATCCTGC
CATGGGATTTTGGGCATCCCGGGTACCCAAATGTTGCTCCTATAGTGTCG
ACTTATATGTCTATCTAATGACATTACGGCAGGAACAATGAGCGGCCGCT
GTTGAGACAGTCAATCAATCCAGTACAGCCAGTGCAGACAGCAGGGAGTC
AATTGGTGGGCTTCTCCCTACAGCAAGTACAGCGCTGAACGTGTTTTTGT
CAGATACCTATTTTGTTCCGAAATAACGTCTGCAAAAGGTGCTAGAAGGG
TTCTAACTCGTTGAGATGTCACTCGGTCCTTTGGTCATTCTCCTCACTGA
TGATTGAAATGTCACTATTCCCGTAACGAAGTTTGAAATTTGTATGCCTG
GAGGTTGAGCGTGAGCACGTTGGAATCTTTGTGCTCCCGGACCATATCTC
AATAGAGCTGCTCCGTAAACTGAGGGGGGGGGGGGGGGCGACACATTTTA
CGTATGTGCCCCTTCGACATTCTGAAACCAACCTTCAGGCGGATGTGTTT
TTGACTTTTTCGTTGCAGATGCTCATCTCTCCGATAAAAACGAAAAAAAA
AAAAAAACGAACATTGGTAACGGTCCGAGGGCTGTAACCGTCCATCTTCG
GGTGATCGGGAATAAGGTACAGATACAGTATATAATATACCGTACTAGAA
ACCCAGAGGTATCGCACTACCGGGGACTGCGAACGTTTCTCCCCCCGGAT
AACTCCGAATTAGTTGCAAATGGTTTTCACATGAAGCTGAAAATATCCGC
TTGATTTTTCAGAATGCGCTCATATATTTATGTGCCCCGGATCATCCACG
ACTGCTAATAATTATTACTCATCAGTCGAATGGACAGGGGTGGATGCTTG
AGTCTATGTGTCTGTCCTCTCATTCTACAACTCGGGTGGATATTTTCAGT
TTTTTGTGATGACCGTTTATTTACGAGTATTCGTATTTGTCCGAGGACTG
CAAACATTTTCCAAACGCGATTAAGTTTTATCTTGAGAACGCAGACAGAC
CTCATGGGATCGAAAAAAGAACCCCATCAATCGATAGGTCATCATCTCCT
TGGCAAGACATTTCCAATGACACATTTTTCAAAATTTTGGTACCCCAGTC
GTGTTATCGACCGTACGGGCTTTACGAGAAGTTGCAGATAGTCTACAATA
TAGGCGAAGAAGATTGAAGGTTGGATAGACAATCTGCGTGGGAAGCAAGT
GGGATTGGATGCAGTGTCACGCGTGTTCATCTATCACCACCACGGGAGTG
TTTCACCATGTAACAATTTTGCACCCCCCCCCCCCCCTGGATGACTGGGA
CTATTTGCGACTATTTAAAAAGAAATTAGTCGCCGAAATCTATACGAATG
TGCGGGATGGATGATAACACATAAAATAAAGTGTTCACCCCCCTTCTTCT
TTTTCGTTTCACGAGTAATCCGAGCTATTTAGAAAGAAATTAGTCGCCGA
AATCTATACGAATGTGCAGGATGGATGATAACACATAAAATAAAGTGTTC
ACCCCCCTTTTTCTTTTTTCGTTTCACGAGTAATCCGAGCAGTCGTACAT
GGTTAGTCCAGGACACATAAAAAAATAAAATGTTTATTCTGAAACTTGGG
CGACCGTTTTTTGTTTTTTTTTCCTTCAGTAGTCGCTAATAATCCTAGTC
GTCTGCGGCGTGTGCAGTTTTGCTTGTTGCAATGGTTTGAGAGTGTTCTA
TTGCAATTGGACAGGAAGAATATATATACCCGTACAGGAAGCAGCACAGT
CATTAACTGACTCTGTTGTACAGTATTGCAAGCTAACTTGGCAGTAATGT
TTTTCAGCGTTGGAGGTCATGTCGCATACTTGAAACATGATGCACGTTTT
ACCTGTTTCTACCTACCCTGTTGTATGTAGGGCGTAGACGTGCAGTTGGT
TGGTTTGAGCTCTCTTTTGATTCCCTTGTTGAATCAAGAGTTCATGTTTC
TGCATAAGTCATGTATATATGTGGGTGTTACTTAAACTTGGTTCGTATAT
ATGATGACTTATGCAGAAATACTATCCCTCACAAGTAGTGGCTAGGTGCT
CTATGGCGGTTAGTTAACCTTGGAGTTTCGTCCTCCCTGTTTTTCCTAAC
GTTTTCCCCCCATTAGATGGGTTACTATAGTCACTTGCGTTGTGCTAGCT
ATATTATCTTGGACGTTGCGATATGAAGGTATACATCATTGTGCGCTCTA
CTACTTGTCGCAGTACTTGTAGTAATCGAAGTGTGTCATGACATTTCCCC
CCCCCCTCTTCTCTTCTACCTGCCGCCGCCGCCGCCGCCCGTTCGTATGC
GTCTCTTCCCCCATGTCCCGTCTTCCCATCCTCTTGGTGGTTACGTACGT
CACGAACGATCTGTGTATCGATCTATGTATCGAACAATCTCTACAAACCT
CGTTTCTTTCAAACGGGTTGATTTTCGGGCCTCGACACACTTCTATACCC
ACCAACTCACCACACACAACCACATATTTTCCGCCACCGCCACCGCTAAC
AACATCAACAACATCAACAACAACAACAACAGAGCGACCGCATCAGAGGC
TCAAAAAGCCACGGGGTAATTGAGCATACACTTCCTCGCCGGCGATCCTT
TTCCCTGTCGGACGATTCACTAGCCGGGGACCACTCTTTCAGCGGCATCA
CTATCAATCGTGGCGGTAACCGCGGCGGCGTGGGCGGTGGGGATGGTGGG
AGCGGTAGGGGCAGCCAGGCCTCGAAAACGCACAACTTCGTCGTGACCCT
GATGGATTCGTCATCGCCGTCCAGTCCTGGGGACGGCCTTAGCAGTGCCG
GGATAACACCTGTCCCCCCCGCTGGCGCCAGCGGGAGGGTGGTCGACACG
GCGGCGGCGGTGCTCAAGCGGAGAAGTAGTGGAGATGACGGTACGTTTGG
TGAAGCAAGGAGCAGAGGAAGAGTTGTTGTTGTTGTTGTTGTTGTTTTTT
GGGGGGTTTTAACCCCCGAAAGGCTAAGGCAACAACCTCTGTCCGATGCT
TCCATACCGAAGTACGTCTACATTTCCTTTACAGAACAGAGTTATTTGTT
CATCTGCGGGGTAGGCGCCACCTCGGTTCGGCTAAATCAGGCAGGCAGTG
TGGGGGGTTGCACCCACTAAAAGACCTCTGACCAGACTTCCAGTCATGCT
CAGTTCACGAGCTACCCTACCCGTTCGGGGGCGTAGGTCCGTGCTTGAGT
TGTTCGAAATTTTGATGTAGTAAATATATGTTAACCAGAACAGGCCATAC
TATATTGGCATAATGCACGCGATTCGTGAAATATTTATATTTGAATGGCC
TTATGATAGAGAGAAAAGACAACTGATAAATTGTCGGAGCTTGCAACGCT
CCACTAGAGAGTCAGGCTGGAGGGGGGGAGGCGGAGATAGCTGGAGTAAA
TTGACCCTGCCACAGGCAATTGAGCTGTAAGTTGCGTCCAGAAGGGGTCA
AGCTCGGAAAAGCGAGCGCGCGCGGGGGGGGGGGGGGGGGGGACAGGGAG
GGCTTGGTGGACCGAAAGGATTCTGTTCACACGACGCCATCATGAACAAG
TACTGGTACTTGACGGAGTATCAGTGAACCACTGGCATGAGCACTATACC
TATAATATGAAATAGTTTTTACATGAGCGACAGATGATTTTTATTTTTTC
TCCCGTAAAGTCGACCCTGCCATAGTCACGTGAACCATAGAATAACCCCA
CTGTGCCCCATGTTGAAATTTACACAGCTGTCTTCCAACTGGTGTTCACA
CATGTGAGCAAAATTGATCACTGAGGGGGAGGCGTGGTAAATTGACCCTG
CCACAGGTGGTTGAACTACAGCTCTGGACCCTGATTATCATAGATAGCTA
TATTGTTCGTGCTTCCCGTGTGTGAGCTTGTCTAGCTGACGTTCAATCAC
CAATGTAGGGGGTAGGTGGTTACGCTGAGGGATACCGATCCCCTCGGTTT
GAGTGAAGTGTTTTTGTTTTTTTTTCTTCAACCCCCGGAAGGCTACAGGC
AAAAACCTTCATCCGATGCTTCCATACCGAAGTAGTTCTACATTTACTAT
AACAGAACAGAGCAATTTTTTCCTCTCCGGGGTAGGCGCCACCCCGGTTC
AGTTAAACCAAATAGGCAGTGTGGGGGTTGCACCCACTAAAAGGCCTCTG
ACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGGC
GTAGGTAGGTCCGTGGAGTGTTGTTTATTTTTTGTCAATATAGTTGTAAT
TATATCTCCTCCTTTTGCATAACTTGATATATACACCGTACGAAAAAGTA
ACCTGGAAACAGTAAGGAGTATACTGTTCAATTGAAGAGTATTCACACCA
ATATGTACAGATTATCTTACGAATACCCGAGAGAGGTACAGTTGTTGGTG
TACCCTTTTTTCACGTCCAATTATATATTTGAAGAATTCGTGACGAAATG
AATAAAAAATGTACATAAATAAGCAAGCATTAAAAGAAGTGTTGACCGTT
GTCGTTCGGTTTATTTTTTCGTATTCGGAATAGTTGTAAATGGTCCGGGG
TAATAATAACAGTATGTGAAATAAGCGTTCGTACTGAGCCTTGAGGCGGA
TCTTATTTTTTAACTTCGGTCGTGACTGCTCCAACTATCCATTTTTTTTT
TTTTTTTGTGCGGGAGGTGACCGTTTTTCAGAGACAGATGTGCCAGGCTG
AAGTATGTCTTCTTTCTTATCCTGATGTCTCTGTACGTTTTTTGGGGGCG
CAATATAAGCGGGAATCAACTACCGTCCCTCTTTTAGCAGAGGAAACAGA
AGGCCTACGGATCGACCAACGCTCTTCTTCAACAATACAAGAGATCAATC
ATTCCCTCGCGTGTATAGTCAGTCACCTGTGTTGTTATTTTCCAGCGTAT
TGACGCCTAATTGCGTGGTGGATAACACGGCTACTTAACAGATATCAGAA
AACAGATTTCCAAGGTGTGGACCTCATGGACGCTCATCGATCGCTATTTA
TTATAGGTGGACGATAAAGGGTGCCAAGTTGAAATCACTCTAATTTATAC
TGTGTTTTTATCCTGAATCTCATCTCTTGAATCGGTTTTACCGTCTACTG
GTACTATTCAAGTACAAACAAGGGCCATTTTTTTTTTTTCTTTCTTTCTT
TCTTTCTTTTCTGTGTCTTGAATTGTCTTGAACAGACCGTAATGGTGGCA
CTGGAGGCAGCGCCGGACGCCTCCGCCAATCAAAGCAACGATCGCGACCG
TCGAGGCTCGCCCTGGAGAATGATAAATACAACGCGGATGATGAAGATGA
CGACGATATTGATGATTATGTCGATGATGATGATGAGGTGCTGCTGGGAG
ATAGAAACCACGCGTCTCTGGAGGAAATGGAAGACGAGACCTCTATTTTT
AAGGGCAACGGTCATATTCAGGGTGGAGGCGGCGGCGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5528:5684..11871-

>mRNA_H-paniculata_contig5528.13008.1 ID=mRNA_H-paniculata_contig5528.13008.1|Name=mRNA_H-paniculata_contig5528.13008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at H-paniculata_contig5528:5684..11871- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGTGGGTGGCCAAGGCGGCCTTCGGCGAAGAAAAAAGACGCGGCGAT
TGGGAGTTATGGTCGAGGAGGTGCCTCCGACACGAGCTCGGAAAGTGCGT
TTGTGGCTGACGCTGCGGCTGCTGGTGCTGCTGCGGCTGCTGGTGCTGCT
GCGGCTGCTGGTGCTGCTGCGGCCGCTGGTGCTGCTGCGGCTGCTGGTAA
CAACCTGATTGCTGCGCTTGGAGGTGGCTCTATCGGCGAATTGCGGATGT
CGATGGGGAGTGGGTGGCCAAGGCGGCCTTCGGCGAAGAAAAAAGACGCG
GCGATTGGGAGTTATGGTCGAGGAGGTGCCTCCGACACGAGCTCGGAAAG
TGCGTTTGTGGCTGACGCTGCGGCTGCTGGTGCTGCTGCGGCTGCTGGTG
CTGCTGCGGCTGCTGGTGCTGCTGCGGCCGCTGGTGCTGCTGCGGCTGCT
GGTAACAACCTGATTGCTGCGCTTGGAGGTGGCTCTATCGGCGAATTGCG
GATGTCGATGAGCGACCGCATCAGAGGCTCAAAAAGCCACGGGGTAATTG
AGCATACACTTCCTCGCCGGCGATCCTTTTCCCTGTCGGACGATTCACTA
GCCGGGGACCACTCTTTCAGCGGCATCACTATCAATCGTGGCGGTAACCG
CGGCGGCGTGGGCGGTGGGGATGGTGGGAGCGGTAGGGGCAGCCAGGCCT
CGAAAACGCACAACTTCGTCGTGACCCTGATGGATTCGTCATCGCCGTCC
AGTCCTGGGGACGGCCTTAGCAGTGCCGGGATAACACCTGTCCCCCCCGC
TGGCGCCAGCGGGAGGGTGGTCGACACGGCGGCGGCGGTGCTCAAGCGGA
GAAGTAGTGGAGATGACGAGCGACCGCATCAGAGGCTCAAAAAGCCACGG
GGTAATTGAGCATACACTTCCTCGCCGGCGATCCTTTTCCCTGTCGGACG
ATTCACTAGCCGGGGACCACTCTTTCAGCGGCATCACTATCAATCGTGGC
GGTAACCGCGGCGGCGTGGGCGGTGGGGATGGTGGGAGCGGTAGGGGCAG
CCAGGCCTCGAAAACGCACAACTTCGTCGTGACCCTGATGGATTCGTCAT
CGCCGTCCAGTCCTGGGGACGGCCTTAGCAGTGCCGGGATAACACCTGTC
CCCCCCGCTGGCGCCAGCGGGAGGGTGGTCGACACGGCGGCGGCGGTGCT
CAAGCGGAGAAGTAGTGGAGATGACGACCGTAATGGTGGCACTGGAGGCA
GCGCCGGACGCCTCCGCCAATCAAAGCAACGATCGCGACCGTCGAGGCTC
GCCCTGGAGAATGATAAATACAACGCGGATGATGAAGATGACGACGATAT
TGATGATTATGTCGATGATGATGATGAGGTGCTGCTGGGAGATAGAAACC
ACGCGTCTCTGGAGGAAATGGAAGACGAGACCTCTATTTTTAAGGGCAAC
GGTCATATTCAGGGTGGAGGCGGCGGCACCGTAATGGTGGCACTGGAGGC
AGCGCCGGACGCCTCCGCCAATCAAAGCAACGATCGCGACCGTCGAGGCT
CGCCCTGGAGAATGATAAATACAACGCGGATGATGAAGATGACGACGATA
TTGATGATTATGTCGATGATGATGATGAGGTGCTGCTGGGAGATAGAAAC
CACGCGTCTCTGGAGGAAATGGAAGACGAGACCTCTATTTTTAAGGGCAA
CGGTCATATTCAGGGTGGAGGCGGCGGC
back to top