mRNA_H-paniculata_contig55197.12994.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig55197.12994.1
Unique NamemRNA_H-paniculata_contig55197.12994.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.650e-7
Identity = 21/32 (65.62%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:   16 GYIGDGQCNPENNIPGCAYDGGDCCLCTCVHH 111
            G IG+G C+  NN P CAYDGGDCC CTC  H
Sbjct:  240 GQIGNGYCDDSNNSPECAYDGGDCCECTCESH 271
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BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:   22 IGDGQCNPENNIPGCAYDGGDCCLCTCVHHVN 117
            IGDG C+ + N P CAYDGGDCC CTC + V+
Sbjct:  357 IGDGYCSEDLNTPECAYDGGDCCACTCQNDVD 388
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BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.820e-6
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:   22 IGDGQCNPENNIPGCAYDGGDCCLCTC 102
            +G+G C PENNIP C YDGGDCC C+C
Sbjct:  162 MGNGLCIPENNIPECEYDGGDCCECSC 188
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BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 1 
Query:   22 IGDGQCNPENNIPGCAYDGGDCCLCTC 102
            +GDG CN +NN   CAYDGGDCC CTC
Sbjct:  295 VGDGYCNQQNNNELCAYDGGDCCSCTC 321
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BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: D7G0S4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 1.960e-5
Identity = 19/29 (65.52%), Postives = 22/29 (75.86%), Query Frame = 1 
Query:   16 GYIGDGQCNPENNIPGCAYDGGDCCLCTC 102
            G  G+G C+ +NNI  CAYDGGDCC CTC
Sbjct:  272 GSFGNGWCDEDNNIEECAYDGGDCCECTC 300
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BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 2.000e-5
Identity = 19/33 (57.58%), Postives = 23/33 (69.70%), Query Frame = 1 
Query:   22 IGDGQCNPENNIPGCAYDGGDCCLCTCVHHVNC 120
            +GDG C+ +NN   CAYDGGDCC CTC  +  C
Sbjct:  183 MGDGYCDMDNNNAACAYDGGDCCECTCEPNNKC 215
[Close]
BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 2.740e-5
Identity = 19/27 (70.37%), Postives = 20/27 (74.07%), Query Frame = 1 
Query:   22 IGDGQCNPENNIPGCAYDGGDCCLCTC 102
            IGDG C+   N P CAYDGGDCC CTC
Sbjct:  131 IGDGYCSENLNTPECAYDGGDCCSCTC 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig55197.12994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LEP6_ECTSI4.650e-765.63Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5JM92_9PHAE2.230e-662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI7.820e-670.37Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FI87_ECTSI1.070e-570.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S4_ECTSI1.960e-565.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI2.000e-557.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3F4_ECTSI2.740e-570.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig55197contigH-paniculata_contig55197:567..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930577.405838-CDS-H-paniculata_contig55197:566..6981622930577.405838-CDS-H-paniculata_contig55197:566..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55197 567..698 +
1691481356.1176007-CDS-H-paniculata_contig55197:566..6981691481356.1176007-CDS-H-paniculata_contig55197:566..698Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig55197 567..698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig55197.12994.1prot_H-paniculata_contig55197.12994.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig55197 567..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig55197.12994.1

>prot_H-paniculata_contig55197.12994.1 ID=prot_H-paniculata_contig55197.12994.1|Name=mRNA_H-paniculata_contig55197.12994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
TSALAGYIGDGQCNPENNIPGCAYDGGDCCLCTCVHHVNCAFAY
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mRNA from alignment at H-paniculata_contig55197:567..698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig55197.12994.1 ID=mRNA_H-paniculata_contig55197.12994.1|Name=mRNA_H-paniculata_contig55197.12994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig55197:567..698+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTCGGCACTTGCCGGATATATCGGTGACGGTCAGTGCAACCCAGAAAA
TAACATCCCGGGCTGTGCATACGACGGAGGTGATTGTTGTCTCTGCACCT
GCGTTCACCACGTTAACTGCGCCTTTGCCTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig55197:567..698+

>mRNA_H-paniculata_contig55197.12994.1 ID=mRNA_H-paniculata_contig55197.12994.1|Name=mRNA_H-paniculata_contig55197.12994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig55197:567..698+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCTCGGCACTTGCCGGATATATCGGTGACGGTCAGTGCAACCCAGAAAA
TAACATCCCGGGCTGTGCATACGACGGAGGTGATTGTTGTCTCTGCACCT
GCGTTCACCACGTTAACTGCGCCTTTGCCTATACCTCGGCACTTGCCGGA
TATATCGGTGACGGTCAGTGCAACCCAGAAAATAACATCCCGGGCTGTGC
ATACGACGGAGGTGATTGTTGTCTCTGCACCTGCGTTCACCACGTTAACT
GCGCCTTTGCCTAT
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