mRNA_H-paniculata_contig5504.12973.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5504.12973.1 vs. uniprot
Match: D7FJX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX5_ECTSI) HSP 1 Score: 167 bits (422), Expect = 3.840e-41 Identity = 147/365 (40.27%), Postives = 209/365 (57.26%), Query Frame = 1
Query: 1357 SQELSAELKESRAREASAKRNAEDRIWAESEKLQEALKVAEAAKNRAEDGLASAKDKKKRDLQQEVRRLNQRMMELQQGRREQAAQWETTVSELKSKL-----ALAQESEAK---LTEALEQVKVVNKGVQVEFGGGFHEQEALLLEKASAADVLREEVEGLKASLEESAVRKQEADATRETLTATLGRANSRIAELTSQASQLSKARSVMANQIRALEAQAYSASLSQASVSPRGEFIPAKSLAKGGTPAKGSSTGTPLREASPSPAVNNPPSGRGTTISVVQQRRRAIIDEND-DADVEEGTTWDGGAMRRGGRDGYQTDAKPGVNHVRALSFISYGASNPVWAALTEQAPGVAIWLNQQPPQ 2424
S+ELS+EL+ +R+REA+A R A + + AE E L+ A+ AEA + +AE+GLA K+KKKRDLQ EVRRLN+RMMELQQ RRE+ + E ++ EL++K ALAQE + + G E+E L + L+ EVEGLK+ LEE + + +A + A LGRAN+RIAELTS+++QL++ARS M QI ALE Q SA+L QA+ + G + G + TPLR+ S P + PP + Q+ R + + + D+E+G GG D ++ AKPG +HV++L IS AS+PV AA++E+ PG+ WL+QQPPQ
Sbjct: 67 SEELSSELEATRSREAAATRTAREGVGAELEGLRGAVGAAEAGREQAEEGLARLKEKKKRDLQ-EVRRLNERMMELQQARREEVSDLEGSLQELRAKTDELEHALAQEEQHQGXXXXXXXXXXXXXXXXXXXXXGPRREEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAQNAKNVSAAALGRANARIAELTSKSAQLTRARSAMVAQINALEEQLKSAALKQAAAATAGGAAETNTTDSGSV----ADFSTPLRDLSEVPPPSQPPMSADPPMRQRQRHRLSGAGPSSGNLDLEDG----GGYFDE---DEHKAQAKPG-DHVKSL-LISC-ASSPVGAAISERLPGLVTWLHQQPPQ 416
BLAST of mRNA_H-paniculata_contig5504.12973.1 vs. uniprot
Match: A0A6H5L1J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J2_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.820e-14 Identity = 56/97 (57.73%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 1357 SQELSAELKESRAREASAKRNAEDRIWAESEKLQEALKVAEAAKNRAEDGLASAKDKKKRDLQQEVRRLNQRMMELQQGRREQAAQWETTVSELKSK 1647
S+ELS+EL+ +RAREA+A R A + + AE E L+ A+ AEA + +AE+GLA KDKKKRDLQ EVRRLN+RMMELQQ RRE+ + E ++ EL++K
Sbjct: 1358 SEELSSELEAARAREAAATRTAREGVGAEIEGLRRAVGTAEAGREQAEEGLARLKDKKKRDLQ-EVRRLNERMMELQQARREEVSDLEGSLQELRAK 1453 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5504.12973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5504.12973.1 >prot_H-paniculata_contig5504.12973.1 ID=prot_H-paniculata_contig5504.12973.1|Name=mRNA_H-paniculata_contig5504.12973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=808bp QQELDESRRVLEAVEAARDTSSHALAAARQEAVAAQTDFEETRNALLKSAback to top mRNA from alignment at H-paniculata_contig5504:1907..12946+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5504.12973.1 ID=mRNA_H-paniculata_contig5504.12973.1|Name=mRNA_H-paniculata_contig5504.12973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11040bp|location=Sequence derived from alignment at H-paniculata_contig5504:1907..12946+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5504:1907..12946+ >mRNA_H-paniculata_contig5504.12973.1 ID=mRNA_H-paniculata_contig5504.12973.1|Name=mRNA_H-paniculata_contig5504.12973.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4848bp|location=Sequence derived from alignment at H-paniculata_contig5504:1907..12946+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |