mRNA_H-paniculata_contig54921.12953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54921.12953.1
Unique NamemRNA_H-paniculata_contig54921.12953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: D7G1B2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1B2_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.000e-26
Identity = 52/71 (73.24%), Postives = 58/71 (81.69%), Query Frame = 1
Query:   73 GDVTSFSWTGMNTYFQYSDAGGIGMGGGG--GSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV 279
            GD+T+F WTGMN Y QYSD  GI MGGGG  GSFGLF+GED LTG+TGKCDT+ NPPLC +E F VSQVEV
Sbjct:  573 GDLTAFGWTGMNMYLQYSDGKGIAMGGGGADGSFGLFIGEDFLTGSTGKCDTYGNPPLCSQEQFQVSQVEV 643          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A4D9DBE4_9STRA (TLDc domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DBE4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.560e-10
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   79 VTSFSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVE 276
            +  F WT  NTY+  S    +GMGGGGG FGLF+G++ L G++G+ +TF N PL   + F++   E
Sbjct:  208 IQFFPWTRENTYYMLSTENSLGMGGGGGEFGLFIGDNFLFGSSGESETFYNAPLARHKTFEILSFE 273          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A6P8G798_CLUHA (nuclear receptor coactivator 7 isoform X4 n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8G798_CLUHA)

HSP 1 Score: 63.5 bits (153), Expect = 3.160e-10
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   70 SGDVTSFSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV 279
            S +   FSWTG N+YF       + +GGGGGSFGL+LG DL  G++  C TF N PL     F V ++EV
Sbjct:  134 SPEFKRFSWTGENSYFVKGFMDSLQLGGGGGSFGLWLGADLCRGSSYTCHTFHNQPLSAHHDFAVRELEV 203          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A7R9WFY7_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WFY7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.290e-10
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 1
Query:   58 VADESGDVTSFSWTGMNTYFQYSDAGG--IGMGGGG--GSFGLFLGEDLLTGTTGKCDTFDNPPLCGKE---AFDVSQVE 276
            +   SGDV  + WTGMN Y Q  D     I  GGGG  G FGL + +D   G+TG+C TF N PLC      +F+V  VE
Sbjct:   61 ILPSSGDVKPYKWTGMNRYIQLVDVRSKMIAFGGGGNAGEFGLCVEDDFRRGSTGRCGTFGNDPLCDSSDGGSFEVVDVE 140          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A8M1KML1_CLUHA (nuclear receptor coactivator 7 isoform X1 n=2 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KML1_CLUHA)

HSP 1 Score: 63.5 bits (153), Expect = 5.940e-10
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query:   70 SGDVTSFSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV 279
            S +   FSWTG N+YF       + +GGGGGSFGL+LG DL  G++  C TF N PL     F V ++EV
Sbjct:  192 SPEFKRFSWTGENSYFVKGFMDSLQLGGGGGSFGLWLGADLCRGSSYTCHTFHNQPLSAHHDFAVRELEV 261          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A7S3PHQ1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PHQ1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.670e-10
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   85 SFSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV 279
            ++ WT  N YF  ++   I MGGGG SFGLFL EDL  GT+G C+T+DNP L   E F    +E+
Sbjct:  166 AYRWTEKNPYFMLANEDSIAMGGGG-SFGLFLDEDLKGGTSGPCETYDNPCLASDEDFSSVVIEL 229          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A7S2NUQ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUQ3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.430e-9
Identity = 35/75 (46.67%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   67 ESGDVTSFSWTGMNTYFQYSDAGG--IGMGGGG--GSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV 279
            +   V  + W+GMN Y Q  D     I MGGGG  G+FGL + ED   G+TG+C TF+N PLC    FDV   EV
Sbjct:  741 DDNQVKIYKWSGMNRYIQLCDTTDKRIAMGGGGTGGNFGLCVEEDFSRGSTGRCQTFENEPLCEGGEFDVLDFEV 815          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A7S2RLH2_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RLH2_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.450e-9
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   49 QCGVADESGDVTSFSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV 279
            +C V     +  ++ W+  N+YF   +   + MGGGGG FG+F+ EDL TG +  C+TF+NP L     F++  +E+
Sbjct: 1032 ECFVFTLEPEFNAYRWSQSNSYFMLPNEDSLSMGGGGGVFGIFIDEDLQTGQSESCETFNNPVLSSTTDFEIQSMEL 1108          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: A0A8H6Z9V9_9AGAR (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Mycena sanguinolenta TaxID=230812 RepID=A0A8H6Z9V9_9AGAR)

HSP 1 Score: 62.0 bits (149), Expect = 3.570e-9
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   70 SGDVTSFSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLC 243
            SG    + WTG N Y    +AG I  GGG G +GL+L E L+ G++ +C TFDN PLC
Sbjct:  515 SGKFDVYKWTGKNDYVALCEAGFISFGGGDGHYGLYLDESLIDGSSARCPTFDNEPLC 572          
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Match: UPI001C7AAB05 (uncharacterized protein n=1 Tax=Marasmius oreades TaxID=181124 RepID=UPI001C7AAB05)

HSP 1 Score: 62.0 bits (149), Expect = 3.600e-9
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   88 FSWTGMNTYFQYSDAGGIGMGGGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGK 249
            + WTG N Y    D   +  GGG G++GL++ E LL G+T +C TFDNPPLC +
Sbjct:  618 YKWTGKNDYVALCDGEFLSFGGGDGAYGLYVDESLLEGSTARCPTFDNPPLCSR 671          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54921.12953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B2_ECTSI6.000e-2673.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9DBE4_9STRA2.560e-1043.94TLDc domain-containing protein n=2 Tax=Monodopsida... [more]
A0A6P8G798_CLUHA3.160e-1047.14nuclear receptor coactivator 7 isoform X4 n=2 Tax=... [more]
A0A7R9WFY7_9STRA3.290e-1045.00Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A8M1KML1_CLUHA5.940e-1047.14nuclear receptor coactivator 7 isoform X1 n=2 Tax=... [more]
A0A7S3PHQ1_9STRA8.670e-1049.23Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2NUQ3_9STRA1.430e-946.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2RLH2_9STRA1.450e-936.36Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8H6Z9V9_9AGAR3.570e-948.28Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
UPI001C7AAB053.600e-948.15uncharacterized protein n=1 Tax=Marasmius oreades ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54921contigH-paniculata_contig54921:325..1006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue7.1e-22
Seed eggNOG ortholog2880.D7G1B2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of peptidyl-cysteine S-nitrosylation
EggNOG OGsCOG5142@1,KOG2372@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930570.7455268-CDS-H-paniculata_contig54921:324..3911622930570.7455268-CDS-H-paniculata_contig54921:324..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54921 325..391 -
1691481353.096086-CDS-H-paniculata_contig54921:324..3911691481353.096086-CDS-H-paniculata_contig54921:324..391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54921 325..391 -
1622930570.767734-CDS-H-paniculata_contig54921:794..10061622930570.767734-CDS-H-paniculata_contig54921:794..1006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54921 795..1006 -
1691481353.1084414-CDS-H-paniculata_contig54921:794..10061691481353.1084414-CDS-H-paniculata_contig54921:794..1006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54921 795..1006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54921.12953.1prot_H-paniculata_contig54921.12953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54921 325..1006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54921.12953.1

>prot_H-paniculata_contig54921.12953.1 ID=prot_H-paniculata_contig54921.12953.1|Name=mRNA_H-paniculata_contig54921.12953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
AVRTRYKHGNTNALPTQCGVADESGDVTSFSWTGMNTYFQYSDAGGIGMG
GGGGSFGLFLGEDLLTGTTGKCDTFDNPPLCGKEAFDVSQVEV
back to top

mRNA from alignment at H-paniculata_contig54921:325..1006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54921.12953.1 ID=mRNA_H-paniculata_contig54921.12953.1|Name=mRNA_H-paniculata_contig54921.12953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at H-paniculata_contig54921:325..1006- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTCGCACCCGTTATAAACATGGAAACACAAACGCCCTCCCTACTCA ATGTGGTGTGGCTGATGAATCAGGCGACGTGACGAGTTTCAGTTGGACAG GGATGAACACGTACTTCCAGTATAGCGATGCCGGTGGTATTGGCATGGGC GGTGGAGGAGGTAGCTTCGGACTTTTTCTTGGCGAAGACTTGTTAACGGG GACAACCGGAAAGTGAGAGCGTAATTTTAATCATGTGATATTTATTTGTT TTTACAAAAGTAGCGTTTTTTTTTTTGTTTTGTTTTTGCCGTTTTCTAAC TCATATATTCGTTATTCCCTACTCCCCGCCCCCTCAAGTATTTGGGGAGA ATTTATTTTGCTTTTTGTTGTTGGTCGTTTGTTCACTGCTCACTTTTTAT TTTTTATTTTTTGTATCTTGGTAGTGTAGTGTGTCTGTGTCTGTGTCTGT CTGTGTCTGTCTGTGTCTGTCTAGCCTCAACATACACAGACAAAAATAAG TATTATACTGTGCAGATTTTTGTTTCATGTTTGAGAATCGCGAGCAACGT AAGTGATGTTCTCATGTCATTCATCCGTTGTGCTGCTGCTGCTGCTGCTG TTGCTGTTGCCGCAGGTGCGATACGTTCGATAACCCCCCGCTGTGCGGTA AAGAGGCGTTCGACGTGTCCCAGGTGGAGGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig54921:325..1006-

>mRNA_H-paniculata_contig54921.12953.1 ID=mRNA_H-paniculata_contig54921.12953.1|Name=mRNA_H-paniculata_contig54921.12953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig54921:325..1006- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGTTCGCACCCGTTATAAACATGGAAACACAAACGCCCTCCCTACTCA
ATGTGGTGTGGCTGATGAATCAGGCGACGTGACGAGTTTCAGTTGGACAG
GGATGAACACGTACTTCCAGTATAGCGATGCCGGTGGTATTGGCATGGGC
GGTGGAGGAGGTAGCTTCGGACTTTTTCTTGGCGAAGACTTGTTAACGGG
GACAACCGGAAAGCCGTTCGCACCCGTTATAAACATGGAAACACAAACGC
CCTCCCTACTCAATGTGGTGTGGCTGATGAATCAGGCGACGTGACGAGTT
TCAGTTGGACAGGGATGAACACGTACTTCCAGTATAGCGATGCCGGTGGT
ATTGGCATGGGCGGTGGAGGAGGTAGCTTCGGACTTTTTCTTGGCGAAGA
CTTGTTAACGGGGACAACCGGAAAGTGCGATACGTTCGATAACCCCCCGC
TGTGCGGTAAAGAGGCGTTCGACGTGTCCCAGGTGGAGGTGGTGCGATAC
GTTCGATAACCCCCCGCTGTGCGGTAAAGAGGCGTTCGACGTGTCCCAGG
TGGAGGTG
back to top