mRNA_H-paniculata_contig54716.12934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54716.12934.1
Unique NamemRNA_H-paniculata_contig54716.12934.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54716.12934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54716contigH-paniculata_contig54716:32..578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size547
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930568.066895-CDS-H-paniculata_contig54716:31..5771622930568.066895-CDS-H-paniculata_contig54716:31..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54716 32..577 +
1691481351.9239647-CDS-H-paniculata_contig54716:31..5771691481351.9239647-CDS-H-paniculata_contig54716:31..577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54716 32..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54716.12934.1prot_H-paniculata_contig54716.12934.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54716 32..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54716.12934.1

>prot_H-paniculata_contig54716.12934.1 ID=prot_H-paniculata_contig54716.12934.1|Name=mRNA_H-paniculata_contig54716.12934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
ALLKTSKTKGRALFPHLNEEAEPQLVKRSVNKANSKPNKTDVTLAGHTTS
HNDNTIVADKARYGEKCPWRRGNSQSLQKRRHITIVRTRGSGNHSCPRKK
RKSKDQQGLKLAVVITEKRLSRLRKPSSAILRPNCVERKNAKCPKMVLVL
KTNVVLHPAEKGPYSVHSHKLNIAVEPEKSAE
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mRNA from alignment at H-paniculata_contig54716:32..578+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54716.12934.1 ID=mRNA_H-paniculata_contig54716.12934.1|Name=mRNA_H-paniculata_contig54716.12934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=547bp|location=Sequence derived from alignment at H-paniculata_contig54716:32..578+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTCCTAAAAACAAGCAAAACTAAGGGCAGAGCCCTCTTCCCGCACCT
CAACGAGGAGGCAGAGCCTCAACTCGTGAAAAGATCGGTAAACAAAGCAA
ACAGTAAACCGAATAAAACAGATGTCACACTAGCAGGCCATACAACGAGT
CATAATGACAATACGATTGTGGCGGATAAAGCCAGGTATGGGGAAAAATG
CCCATGGAGACGGGGGAATAGTCAAAGCTTGCAAAAAAGAAGACACATCA
CCATTGTGAGAACCCGGGGGAGTGGAAATCATTCATGCCCAAGGAAAAAG
AGAAAATCTAAAGACCAACAGGGGCTTAAATTGGCGGTCGTAATTACAGA
AAAACGGTTGTCCAGGCTCCGGAAGCCTTCGTCGGCGATACTCCGGCCAA
ACTGTGTAGAGAGAAAAAATGCTAAATGTCCAAAGATGGTGCTGGTATTG
AAGACCAATGTAGTACTGCATCCGGCAGAAAAAGGTCCTTATAGCGTCCA
TTCCCACAAGCTCAATATAGCAGTTGAACCTGAAAAGAGCGCAGAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig54716:32..578+

>mRNA_H-paniculata_contig54716.12934.1 ID=mRNA_H-paniculata_contig54716.12934.1|Name=mRNA_H-paniculata_contig54716.12934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig54716:32..578+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCTCCTAAAAACAAGCAAAACTAAGGGCAGAGCCCTCTTCCCGCACCT
CAACGAGGAGGCAGAGCCTCAACTCGTGAAAAGATCGGTAAACAAAGCAA
ACAGTAAACCGAATAAAACAGATGTCACACTAGCAGGCCATACAACGAGT
CATAATGACAATACGATTGTGGCGGATAAAGCCAGGTATGGGGAAAAATG
CCCATGGAGACGGGGGAATAGTCAAAGCTTGCAAAAAAGAAGACACATCA
CCATTGTGAGAACCCGGGGGAGTGGAAATCATTCATGCCCAAGGAAAAAG
AGAAAATCTAAAGACCAACAGGGGCTTAAATTGGCGGTCGTAATTACAGA
AAAACGGTTGTCCAGGCTCCGGAAGCCTTCGTCGGCGATACTCCGGCCAA
ACTGTGTAGAGAGAAAAAATGCTAAATGTCCAAAGATGGTGCTGGTATTG
AAGACCAATGTAGTACTGCATCCGGCAGAAAAAGGTCCTTATAGCGTCCA
TTCCCACAAGCTCAATATAGCAGTTGAACCTGAAAAGAGCGCAGAAGCTC
TCCTAAAAACAAGCAAAACTAAGGGCAGAGCCCTCTTCCCGCACCTCAAC
GAGGAGGCAGAGCCTCAACTCGTGAAAAGATCGGTAAACAAAGCAAACAG
TAAACCGAATAAAACAGATGTCACACTAGCAGGCCATACAACGAGTCATA
ATGACAATACGATTGTGGCGGATAAAGCCAGGTATGGGGAAAAATGCCCA
TGGAGACGGGGGAATAGTCAAAGCTTGCAAAAAAGAAGACACATCACCAT
TGTGAGAACCCGGGGGAGTGGAAATCATTCATGCCCAAGGAAAAAGAGAA
AATCTAAAGACCAACAGGGGCTTAAATTGGCGGTCGTAATTACAGAAAAA
CGGTTGTCCAGGCTCCGGAAGCCTTCGTCGGCGATACTCCGGCCAAACTG
TGTAGAGAGAAAAAATGCTAAATGTCCAAAGATGGTGCTGGTATTGAAGA
CCAATGTAGTACTGCATCCGGCAGAAAAAGGTCCTTATAGCGTCCATTCC
CACAAGCTCAATATAGCAGTTGAACCTGAAAAGAGCGCAGAA
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