mRNA_H-paniculata_contig54565.12912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54565.12912.1
Unique NamemRNA_H-paniculata_contig54565.12912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54565.12912.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.250e-12
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 KILKSDNDTHEFVAYFQKEMEAKDGAISKLNDELIRKE 114
            KI KS+NDTHEFVAYFQKEME KDG ISKLNDELIRKE
Sbjct:   46 KIFKSENDTHEFVAYFQKEMETKDGIISKLNDELIRKE 83
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BLAST of mRNA_H-paniculata_contig54565.12912.1 vs. uniprot
Match: A0A7S2UZS8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-6
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 KILKSDNDTHEFVAYFQKEMEAKDGAISKLNDELIRKEV 117
            K+ KS+ DTHEFVAYFQ+EME KD  I+ L D L++KEV
Sbjct:   65 KLAKSEKDTHEFVAYFQREMENKDEIIANLKDNLVQKEV 103
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BLAST of mRNA_H-paniculata_contig54565.12912.1 vs. uniprot
Match: A0A2R5G805_9STRA (Basal body-orientation factor 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G805_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.920e-5
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 KILKSDNDTHEFVAYFQKEMEAKDGAISKLNDELIRKEVRLE 126
            K  KS+ DTHEFVAYFQ E+E KD  I+KL +E  R E R E
Sbjct:  461 KAAKSEKDTHEFVAYFQNEIEKKDATIAKLAEESNRSEARAE 502
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54565.12912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRG7_ECTSI2.250e-1289.47Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S2UZS8_9STRA1.140e-664.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2R5G805_9STRA1.920e-559.52Basal body-orientation factor 1 n=1 Tax=Hondaea fe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54565contigH-paniculata_contig54565:253..402 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.6e-10
Seed eggNOG ortholog2880.D8LRG7
Preferred nameCCDC176
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.motile cilium assembly
EggNOG OGs28J0W@1,2QRCW@2759
Ec32 ortholog descriptionsideroflexin 2
Ec32 orthologEc-18_004470.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930565.0386288-CDS-H-paniculata_contig54565:252..4021622930565.0386288-CDS-H-paniculata_contig54565:252..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54565 253..402 +
1691481350.5262246-CDS-H-paniculata_contig54565:252..4021691481350.5262246-CDS-H-paniculata_contig54565:252..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54565 253..402 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54565.12912.1prot_H-paniculata_contig54565.12912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54565 253..402 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54565.12912.1

>prot_H-paniculata_contig54565.12912.1 ID=prot_H-paniculata_contig54565.12912.1|Name=mRNA_H-paniculata_contig54565.12912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
KILKSDNDTHEFVAYFQKEMEAKDGAISKLNDELIRKEVRLETCTLTSA*
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mRNA from alignment at H-paniculata_contig54565:253..402+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54565.12912.1 ID=mRNA_H-paniculata_contig54565.12912.1|Name=mRNA_H-paniculata_contig54565.12912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig54565:253..402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATTTTGAAGTCGGACAACGACACGCATGAGTTTGTGGCGTATTTCCA
GAAGGAGATGGAAGCGAAAGACGGTGCGATCTCCAAGCTCAATGACGAGC
TGATTCGTAAAGAGGTGAGGCTTGAGACTTGCACCTTGACAAGCGCATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig54565:253..402+

>mRNA_H-paniculata_contig54565.12912.1 ID=mRNA_H-paniculata_contig54565.12912.1|Name=mRNA_H-paniculata_contig54565.12912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig54565:253..402+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAATTTTGAAGTCGGACAACGACACGCATGAGTTTGTGGCGTATTTCCA
GAAGGAGATGGAAGCGAAAGACGGTGCGATCTCCAAGCTCAATGACGAGC
TGATTCGTAAAGAGGTGAGGCTTGAGACTTGCACCTTGACAAGCGCATGA
AAAATTTTGAAGTCGGACAACGACACGCATGAGTTTGTGGCGTATTTCCA
GAAGGAGATGGAAGCGAAAGACGGTGCGATCTCCAAGCTCAATGACGAGC
TGATTCGTAAAGAGGTGAGGCTTGAGACTTGCACCTTGACAAGCGCATGA
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