mRNA_H-paniculata_contig5456.12911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5456.12911.1
Unique NamemRNA_H-paniculata_contig5456.12911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5456.12911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5456contigH-paniculata_contig5456:6947..7411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930564.979741-CDS-H-paniculata_contig5456:6946..73031622930564.979741-CDS-H-paniculata_contig5456:6946..7303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5456 6947..7303 +
1691481350.504134-CDS-H-paniculata_contig5456:6946..73031691481350.504134-CDS-H-paniculata_contig5456:6946..7303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5456 6947..7303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930565.0017705-UTR-H-paniculata_contig5456:7303..74111622930565.0017705-UTR-H-paniculata_contig5456:7303..7411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5456 7304..7411 +
1691481350.5151033-UTR-H-paniculata_contig5456:7303..74111691481350.5151033-UTR-H-paniculata_contig5456:7303..7411Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5456 7304..7411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5456.12911.1prot_H-paniculata_contig5456.12911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5456 6947..7303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5456.12911.1

>prot_H-paniculata_contig5456.12911.1 ID=prot_H-paniculata_contig5456.12911.1|Name=mRNA_H-paniculata_contig5456.12911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
TAHRCFVGTGDVTSKLRRVYILQAIASYRGLRSLCPGKRSYARIPLAIIG
LDKHLHGQKRFASPCLVCDVVWFGRETRSQLFHYSLCQEISRTGYCRKDA
LESIQSPFYRRVFNLQLI*
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mRNA from alignment at H-paniculata_contig5456:6947..7411+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5456.12911.1 ID=mRNA_H-paniculata_contig5456.12911.1|Name=mRNA_H-paniculata_contig5456.12911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=465bp|location=Sequence derived from alignment at H-paniculata_contig5456:6947..7411+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCTCATCGTTGCTTCGTTGGCACAGGTGATGTCACTTCGAAGTTGAG
ACGGGTTTATATCCTACAGGCTATCGCAAGCTATCGGGGCCTGAGGTCGT
TATGCCCGGGTAAACGATCGTATGCACGCATTCCCCTCGCCATCATAGGC
CTCGACAAACATCTGCATGGGCAGAAGCGTTTTGCCTCCCCATGTTTAGT
GTGTGATGTTGTATGGTTCGGAAGAGAGACTCGAAGTCAACTATTCCACT
ACTCCCTTTGCCAGGAAATTTCTCGTACAGGCTATTGCCGCAAGGATGCT
CTAGAGTCAATACAGTCACCATTCTATCGCAGAGTATTCAATTTACAATT
AATCTAACCATTCGCCACCATCAACCTACCTGCAACCCATCGGAGATTAA
TCCAGATGCCAACTCTACAAGTAGCCGATGCACACATTCGTACCATGACT
GCAAGCATACATGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5456:6947..7411+

>mRNA_H-paniculata_contig5456.12911.1 ID=mRNA_H-paniculata_contig5456.12911.1|Name=mRNA_H-paniculata_contig5456.12911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig5456:6947..7411+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGCTCATCGTTGCTTCGTTGGCACAGGTGATGTCACTTCGAAGTTGAG
ACGGGTTTATATCCTACAGGCTATCGCAAGCTATCGGGGCCTGAGGTCGT
TATGCCCGGGTAAACGATCGTATGCACGCATTCCCCTCGCCATCATAGGC
CTCGACAAACATCTGCATGGGCAGAAGCGTTTTGCCTCCCCATGTTTAGT
GTGTGATGTTGTATGGTTCGGAAGAGAGACTCGAAGTCAACTATTCCACT
ACTCCCTTTGCCAGGAAATTTCTCGTACAGGCTATTGCCGCAAGGATGCT
CTAGAGTCAATACAGTCACCATTCTATCGCAGAGTATTCAATTTACAATT
AATCTAAACAGCTCATCGTTGCTTCGTTGGCACAGGTGATGTCACTTCGA
AGTTGAGACGGGTTTATATCCTACAGGCTATCGCAAGCTATCGGGGCCTG
AGGTCGTTATGCCCGGGTAAACGATCGTATGCACGCATTCCCCTCGCCAT
CATAGGCCTCGACAAACATCTGCATGGGCAGAAGCGTTTTGCCTCCCCAT
GTTTAGTGTGTGATGTTGTATGGTTCGGAAGAGAGACTCGAAGTCAACTA
TTCCACTACTCCCTTTGCCAGGAAATTTCTCGTACAGGCTATTGCCGCAA
GGATGCTCTAGAGTCAATACAGTCACCATTCTATCGCAGAGTATTCAATT
TACAATTAATCTAA
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