mRNA_H-paniculata_contig12020.1291.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12020.1291.1
Unique NamemRNA_H-paniculata_contig12020.1291.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12020.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12020contigH-paniculata_contig12020:1121..1873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size753
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12020.1291.1prot_H-paniculata_contig12020.1291.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12020 1166..1552 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.8283079-UTR-H-paniculata_contig12020:1120..11651622928917.8283079-UTR-H-paniculata_contig12020:1120..1165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12020 1121..1165 +
1691480667.2753408-UTR-H-paniculata_contig12020:1120..11651691480667.2753408-UTR-H-paniculata_contig12020:1120..1165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12020 1121..1165 +
1622928917.8534255-UTR-H-paniculata_contig12020:1552..18731622928917.8534255-UTR-H-paniculata_contig12020:1552..1873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12020 1553..1873 +
1691480667.2918954-UTR-H-paniculata_contig12020:1552..18731691480667.2918954-UTR-H-paniculata_contig12020:1552..1873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12020 1553..1873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.8403103-CDS-H-paniculata_contig12020:1165..15521622928917.8403103-CDS-H-paniculata_contig12020:1165..1552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12020 1166..1552 +
1691480667.2840288-CDS-H-paniculata_contig12020:1165..15521691480667.2840288-CDS-H-paniculata_contig12020:1165..1552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12020 1166..1552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12020.1291.1

>prot_H-paniculata_contig12020.1291.1 ID=prot_H-paniculata_contig12020.1291.1|Name=mRNA_H-paniculata_contig12020.1291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MKVILLHLFLYLHMIFEVVHGPTASLCNGTYVVAFLYYDTRKHISTSSHP
LALSSTSTSCALDLLLLPHVVRVKTNKKVRIENRISPASLPQDQESSTGE
AGRWRQHGPPIKTTHSHKPKTRTNMLLL*
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mRNA from alignment at H-paniculata_contig12020:1121..1873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12020.1291.1 ID=mRNA_H-paniculata_contig12020.1291.1|Name=mRNA_H-paniculata_contig12020.1291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=753bp|location=Sequence derived from alignment at H-paniculata_contig12020:1121..1873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCGTCTCCTACAACAACAGTACTAACTAATAGATACGAAAAAATGAA
AGTAATTCTACTGCATTTGTTTTTGTATTTGCACATGATTTTCGAGGTCG
TGCACGGACCCACGGCATCACTGTGCAACGGTACGTATGTGGTGGCATTT
CTTTACTACGATACAAGAAAACACATCTCTACTTCCTCCCATCCGTTAGC
ACTCTCTAGTACTAGTACCTCCTGTGCACTCGACCTATTGCTGCTGCCCC
ATGTCGTTCGAGTAAAAACCAATAAAAAAGTAAGAATTGAGAATCGTATT
TCGCCAGCGTCACTTCCTCAAGATCAAGAGTCATCTACGGGTGAGGCTGG
GCGCTGGCGACAGCATGGACCTCCTATAAAAACGACACATTCACACAAAC
CAAAGACACGAACAAATATGCTCCTATTGTAAGACTGCAGTTACATCATG
AATAGCGTCCCTTTTCGCCCTATATCTGCTCCTGTTGCTGCTGCTGAAGG
TGCGCTTGCGCTCGAACATATGCGGTTGGTTGCTGCACTGCGAACCAAAA
TGCACGCTGTTGTAGGAACTGATTTCGAAAAAACCAACCGTACCGTTGTG
TTTGTTACCCTACGGGTACGACTCTATCATATGTTGTATTCACTCAAAAA
TCAACTCAACACGGCAGTGTTATTATGCCCCCCTTTTTGACCTAAATTTC
GCTGGTAAGTGTTCATAACTCAAGTTAGAACTCAGGTGCATAACCTCAAC
ATG
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Coding sequence (CDS) from alignment at H-paniculata_contig12020:1121..1873+

>mRNA_H-paniculata_contig12020.1291.1 ID=mRNA_H-paniculata_contig12020.1291.1|Name=mRNA_H-paniculata_contig12020.1291.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig12020:1121..1873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGTAATTCTACTGCATTTGTTTTTGTATTTGCACATGATTTTCGA
GGTCGTGCACGGACCCACGGCATCACTGTGCAACGGTACGTATGTGGTGG
CATTTCTTTACTACGATACAAGAAAACACATCTCTACTTCCTCCCATCCG
TTAGCACTCTCTAGTACTAGTACCTCCTGTGCACTCGACCTATTGCTGCT
GCCCCATGTCGTTCGAGTAAAAACCAATAAAAAAGTAAGAATTGAGAATC
GTATTTCGCCAGCGTCACTTCCTCAAGATCAAGAGTCATCTACGGGTGAG
GCTGGGCGCTGGCGACAGCATGGACCTCCTATAAAAACGACACATTCACA
CAAACCAAAGACACGAACAAATATGCTCCTATTGTAAATGAAAGTAATTC
TACTGCATTTGTTTTTGTATTTGCACATGATTTTCGAGGTCGTGCACGGA
CCCACGGCATCACTGTGCAACGGTACGTATGTGGTGGCATTTCTTTACTA
CGATACAAGAAAACACATCTCTACTTCCTCCCATCCGTTAGCACTCTCTA
GTACTAGTACCTCCTGTGCACTCGACCTATTGCTGCTGCCCCATGTCGTT
CGAGTAAAAACCAATAAAAAAGTAAGAATTGAGAATCGTATTTCGCCAGC
GTCACTTCCTCAAGATCAAGAGTCATCTACGGGTGAGGCTGGGCGCTGGC
GACAGCATGGACCTCCTATAAAAACGACACATTCACACAAACCAAAGACA
CGAACAAATATGCTCCTATTGTAA
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