mRNA_H-paniculata_contig54411.12896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54411.12896.1
Unique NamemRNA_H-paniculata_contig54411.12896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: RBL_ECTSI (Ribulose bisphosphate carboxylase large chain n=2255 Tax=PX clade TaxID=569578 RepID=RBL_ECTSI)

HSP 1 Score: 463 bits (1192), Expect = 4.830e-161
Identity = 225/235 (95.74%), Postives = 230/235 (97.87%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR 705
            MYERAEYAH+IGSVIVMIDLVIGYTAIQSMAIWARK E+ILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALE+MVLARNE RDYVGEGP+ILR AA TCGPLKAALDLWKDITFDYTSTDTPDFVEVAT SR
Sbjct:  254 MYERAEYAHAIGSVIVMIDLVIGYTAIQSMAIWARKAEVILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALESMVLARNEGRDYVGEGPDILRRAASTCGPLKAALDLWKDITFDYTSTDTPDFVEVATGSR 488
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: Q9GIB9_9PHAE (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=2 Tax=Sargassaceae TaxID=3014 RepID=Q9GIB9_9PHAE)

HSP 1 Score: 452 bits (1164), Expect = 4.100e-160
Identity = 218/234 (93.16%), Postives = 228/234 (97.44%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATES 702
            MYERAEY+H+IGSVI MIDLV+GYTAIQ+MAIWARK EMILHLHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEGDPLMV+GFYN+LLLT LKINLAEGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVLARNE RDYVGEGPEILRTAA TCGPLKAA+DLWKDITF+YTSTDTPDFVEVATES
Sbjct:   35 MYERAEYSHAIGSVICMIDLVVGYTAIQTMAIWARKAEMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYVGEGPEILRTAASTCGPLKAAIDLWKDITFEYTSTDTPDFVEVATES 268
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: Q9MVN7_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=8 Tax=Fucales TaxID=3009 RepID=Q9MVN7_9PHAE)

HSP 1 Score: 454 bits (1167), Expect = 7.230e-159
Identity = 219/235 (93.19%), Postives = 228/235 (97.02%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR 705
            MYERAEY+H+IGSVI MIDLV+GYTAIQ+MAIWARK EMILHLHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEGDPLMV+GFYN+LLLT LKINLAEGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVLARNE RDYVGEGPEILRTAA TCGPLKAALDLWKDITF+YTSTDTPDFVEVATES 
Sbjct:  145 MYERAEYSHAIGSVICMIDLVVGYTAIQTMAIWARKAEMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYVGEGPEILRTAASTCGPLKAALDLWKDITFEYTSTDTPDFVEVATESN 379
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: Q7IJR2_9PHAE (Ribulose-bisphosphate carboxylase (Fragment) n=1 Tax=Sargassum muticum TaxID=74468 RepID=Q7IJR2_9PHAE)

HSP 1 Score: 448 bits (1153), Expect = 2.150e-157
Identity = 216/234 (92.31%), Postives = 226/234 (96.58%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATES 702
            MYERAEY+H+IGSVI MIDLV+GYTAIQ+MAIWARK EMILHLHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEGDPLMV+GFYN+LLLT LKINLAEGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVL RNE RDYVGEGPEILRTAA TCGPL AALDLWKDITF+YTSTDTPDFVEVATE+
Sbjct:  102 MYERAEYSHAIGSVICMIDLVVGYTAIQTMAIWARKAEMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLPRNEGRDYVGEGPEILRTAASTCGPLNAALDLWKDITFEYTSTDTPDFVEVATEN 335
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: Q9GIB7_9PHAE (Ribulose-bisphosphate carboxylase (Fragment) n=1 Tax=Sargassum fallax TaxID=129343 RepID=Q9GIB7_9PHAE)

HSP 1 Score: 448 bits (1153), Expect = 6.190e-157
Identity = 217/234 (92.74%), Postives = 226/234 (96.58%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATES 702
            MYERAEY+H+IGSVI MIDLV+GYTAIQ+MAIWARK EMILHLHRAGNSTYARQKNHGINF VICKWMRM GVDHIHAGTVVGKLE DPLMV+GFYN+LLLT LKINLAEGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVLARNE RDYVGEGPEILRTAA TCGPLKAALDLWKDITF+YTSTDTPDFVEVATES
Sbjct:  124 MYERAEYSHAIGSVICMIDLVVGYTAIQTMAIWARKAEMILHLHRAGNSTYARQKNHGINFXVICKWMRMSGVDHIHAGTVVGKLEXDPLMVRGFYNTLLLTELKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYVGEGPEILRTAASTCGPLKAALDLWKDITFEYTSTDTPDFVEVATES 357
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: E0WD02_9PHAE (Ribulose-bisphosphate carboxylase (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=E0WD02_9PHAE)

HSP 1 Score: 442 bits (1138), Expect = 2.100e-155
Identity = 212/235 (90.21%), Postives = 224/235 (95.32%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR 705
            MYERAE+A S+G+VI M+DLVIGYTAIQ+MAIWARK +MILHLHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEGDPLMV+GFYN+LLLT L +NL EGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYV +GPEILR AA TCGPLKAALDLWKDITF+YTSTDTPDFVEVATES 
Sbjct:   83 MYERAEFAESVGTVICMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELSVNLPEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVSQGPEILRVAAATCGPLKAALDLWKDITFEYTSTDTPDFVEVATESN 317
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: J7LKM2_TUROR (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=1 Tax=Turbinaria ornata TaxID=86657 RepID=J7LKM2_TUROR)

HSP 1 Score: 436 bits (1121), Expect = 5.340e-154
Identity = 210/234 (89.74%), Postives = 224/234 (95.73%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATES 702
            MYERAEY+H+IG VI MIDLV+GYTAIQ+MAIWARK EMIL+LHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEG+PLMV+G+YN+LLLT LKINLAEG+FFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVLARNE RDYVGEGPEIL TAA TCGPLKAALD WK+ITF+YTSTDTPDF EVATES
Sbjct:    7 MYERAEYSHAIGGVICMIDLVVGYTAIQTMAIWARKAEMILYLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGNPLMVRGYYNTLLLTELKINLAEGIFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYVGEGPEILCTAASTCGPLKAALDHWKNITFEYTSTDTPDFFEVATES 240
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: Q9XPY0_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=1 Tax=Haplospora globosa TaxID=86885 RepID=Q9XPY0_9PHAE)

HSP 1 Score: 434 bits (1116), Expect = 7.730e-151
Identity = 209/219 (95.43%), Postives = 213/219 (97.26%), Query Frame = 1 
Query:   49 MIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR 705
            MIDLV+GYTAIQSMAIWARK EMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMV+GFYN+LLLT LKINLAEGLFFDMDWA+LRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNE RDYVGEGPEILR AA TCGPLKAALDLWKDITFDYTSTDTPDFVEVATES 
Sbjct:  179 MIDLVVGYTAIQSMAIWARKAEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTQLKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEGRDYVGEGPEILRNAASTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESN 397
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: A0A858LFZ1_9STRA (Ribulose bisphosphate carboxylase large chain n=9 Tax=Ochrophyta TaxID=2696291 RepID=A0A858LFZ1_9STRA)

HSP 1 Score: 435 bits (1119), Expect = 5.840e-150
Identity = 209/235 (88.94%), Postives = 223/235 (94.89%), Query Frame = 1 
Query:    1 MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR 705
            MYERA YA  IGS+I+M+DLVIGYTAIQ+MAIWARK++MILHLHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEGDPLMVKGFYN+LL T L INL++GLFFDMDWA+LRK VPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVLARNE RDY+ EGP+ILR AAKTCGPLK ALDLWKDITFDYTSTDTPDFVEVATES+
Sbjct:  254 MYERALYAKEIGSIIIMVDLVIGYTAIQTMAIWARKHDMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVKGFYNTLLETKLSINLSQGLFFDMDWASLRKVVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYLNEGPQILRDAAKTCGPLKTALDLWKDITFDYTSTDTPDFVEVATESK 488
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BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Match: A0A059VQM0_9STRA (Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (Fragment) n=4 Tax=Vaucheria TaxID=2976 RepID=A0A059VQM0_9STRA)

HSP 1 Score: 424 bits (1089), Expect = 2.910e-149
Identity = 202/232 (87.07%), Postives = 221/232 (95.26%), Query Frame = 1 
Query:   10 RAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAKTCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR 705
            RA+YA S+G++IVMIDLV+GYTAIQ+MAIWARK +MILHLHRAGNSTYARQKNHGINFRVICKWMRM G+DHIHAGTVVGKLEGDPLMVKGFYN+LLLT L+I+L +GLFF+M+WAALRK VPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQ+GATANRVALEAMVLARNE RDY+ EGP+ILR AAKTCGPLK ALDLWKDITF+YTSTDTPDFVEVAT+S 
Sbjct:    1 RADYAKSLGTIIVMIDLVVGYTAIQTMAIWARKADMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGIDHIHAGTVVGKLEGDPLMVKGFYNALLLTKLEIDLPQGLFFEMEWAALRKVVPVASGGIHCGQMHQLLYYLGDDVVLQFGGGTIGHPDGIQAGATANRVALEAMVLARNEGRDYLNEGPQILRDAAKTCGPLKTALDLWKDITFEYTSTDTPDFVEVATQSN 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54411.12896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RBL_ECTSI4.830e-16195.74Ribulose bisphosphate carboxylase large chain n=22... [more]
Q9GIB9_9PHAE4.100e-16093.16Ribulose-1,5-bisphosphate carboxylase/oxygenase la... [more]
Q9MVN7_9PHAE7.230e-15993.19Ribulose bisphosphate carboxylase large chain (Fra... [more]
Q7IJR2_9PHAE2.150e-15792.31Ribulose-bisphosphate carboxylase (Fragment) n=1 T... [more]
Q9GIB7_9PHAE6.190e-15792.74Ribulose-bisphosphate carboxylase (Fragment) n=1 T... [more]
E0WD02_9PHAE2.100e-15590.21Ribulose-bisphosphate carboxylase (Fragment) n=2 T... [more]
J7LKM2_TUROR5.340e-15489.74Ribulose-1,5-bisphosphate carboxylase/oxygenase la... [more]
Q9XPY0_9PHAE7.730e-15195.43Ribulose bisphosphate carboxylase large chain (Fra... [more]
A0A858LFZ1_9STRA5.840e-15088.94Ribulose bisphosphate carboxylase large chain n=9 ... [more]
A0A059VQM0_9STRA2.910e-14987.07Ribulose-1,5-bisphosphate carboxylase/oxygenase la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54411contigH-paniculata_contig54411:103..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.0
Seed ortholog evalue2.6e-129
Seed eggNOG ortholog2880.D1J7D6
Preferred namerbcL
KEGG rclassRC00040,RC00172,RC00253,RC00367,RC00859
KEGG koko:K01601,ko:K01963
KEGG ReactionR00024,R00742,R03140,R04386
KEGG Pathwayko00061,ko00620,ko00630,ko00640,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00630,map00640,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00165,M00166,M00376,M00532
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ribulose-bisphosphate carboxylase activity
EggNOG OGs2QTI9@2759,COG1850@1
EC2.1.3.15,4.1.1.39,6.4.1.2
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size708
Cds size708
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930563.145336-CDS-H-paniculata_contig54411:102..8101622930563.145336-CDS-H-paniculata_contig54411:102..810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54411 103..810 -
1691481349.8277824-CDS-H-paniculata_contig54411:102..8101691481349.8277824-CDS-H-paniculata_contig54411:102..810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54411 103..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54411.12896.1prot_H-paniculata_contig54411.12896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54411 103..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54411.12896.1

>prot_H-paniculata_contig54411.12896.1 ID=prot_H-paniculata_contig54411.12896.1|Name=mRNA_H-paniculata_contig54411.12896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MYERAEYAHSIGSVIVMIDLVIGYTAIQSMAIWARKYEMILHLHRAGNST
YARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLL
LTHLKINLAEGLFFDMDWAALRKCVPVASGGIHCGQMHQLLYYLGDDVVL
QFGGGTIGHPDGIQSGATANRVALEAMVLARNEERDYVGEGPEILRTAAK
TCGPLKAALDLWKDITFDYTSTDTPDFVEVATESR*
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mRNA from alignment at H-paniculata_contig54411:103..810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54411.12896.1 ID=mRNA_H-paniculata_contig54411.12896.1|Name=mRNA_H-paniculata_contig54411.12896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=708bp|location=Sequence derived from alignment at H-paniculata_contig54411:103..810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGAGCGTGCGGAATATGCACATTCAATTGGTTCAGTTATTGTGAT
GATCGATTTAGTTATCGGTTACACAGCAATCCAAAGTATGGCAATATGGG
CACGTAAATATGAAATGATTTTACATTTACATCGTGCAGGAAACTCTACT
TATGCTCGTCAAAAAAACCACGGTATTAATTTCCGAGTTATTTGTAAATG
GATGCGTATGTGTGGTGTAGACCATATTCATGCTGGTACTGTAGTTGGTA
AATTAGAAGGTGATCCTTTGATGGTTAAAGGTTTCTACAACAGTTTACTA
TTAACTCATTTAAAAATTAACCTAGCTGAAGGTCTATTCTTCGATATGGA
TTGGGCAGCTCTTAGAAAGTGTGTTCCTGTAGCTTCTGGTGGTATCCACT
GTGGTCAAATGCACCAACTTCTTTACTACTTAGGTGATGATGTGGTTTTA
CAATTTGGTGGTGGTACAATTGGTCATCCAGATGGTATTCAATCAGGTGC
GACAGCTAACCGTGTTGCTTTAGAAGCTATGGTTTTAGCACGTAATGAAG
AACGTGATTATGTAGGTGAAGGTCCTGAAATTTTACGTACTGCAGCAAAA
ACTTGTGGTCCATTAAAAGCAGCTTTAGATTTATGGAAAGATATTACTTT
CGATTACACTTCAACTGATACACCTGATTTCGTTGAAGTTGCAACAGAAA
GTAGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig54411:103..810-

>mRNA_H-paniculata_contig54411.12896.1 ID=mRNA_H-paniculata_contig54411.12896.1|Name=mRNA_H-paniculata_contig54411.12896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig54411:103..810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGAGCGTGCGGAATATGCACATTCAATTGGTTCAGTTATTGTGAT
GATCGATTTAGTTATCGGTTACACAGCAATCCAAAGTATGGCAATATGGG
CACGTAAATATGAAATGATTTTACATTTACATCGTGCAGGAAACTCTACT
TATGCTCGTCAAAAAAACCACGGTATTAATTTCCGAGTTATTTGTAAATG
GATGCGTATGTGTGGTGTAGACCATATTCATGCTGGTACTGTAGTTGGTA
AATTAGAAGGTGATCCTTTGATGGTTAAAGGTTTCTACAACAGTTTACTA
TTAACTCATTTAAAAATTAACCTAGCTGAAGGTCTATTCTTCGATATGGA
TTGGGCAGCTCTTAGAAAGTGTGTTCCTGTAGCTTCTGGTGGTATCCACT
GTGGTCAAATGCACCAACTTCTTTACTACTTAGGTGATGATGTGGTTTTA
CAATTTGGTGGTGGTACAATTGGTCATCCAGATGGTATTCAATCAGGTGC
GACAGCTAACCGTGTTGCTTTAGAAGCTATGGTTTTAGCACGTAATGAAG
AACGTGATTATGTAGGTGAAGGTCCTGAAATTTTACGTACTGCAGCAAAA
ACTTGTGGTCCATTAAAAGCAGCTTTAGATTTATGGAAAGATATTACTTT
CGATTACACTTCAACTGATACACCTGATTTCGTTGAAGTTGCAACAGAAA
GTAGATAAATGTATGAGCGTGCGGAATATGCACATTCAATTGGTTCAGTT
ATTGTGATGATCGATTTAGTTATCGGTTACACAGCAATCCAAAGTATGGC
AATATGGGCACGTAAATATGAAATGATTTTACATTTACATCGTGCAGGAA
ACTCTACTTATGCTCGTCAAAAAAACCACGGTATTAATTTCCGAGTTATT
TGTAAATGGATGCGTATGTGTGGTGTAGACCATATTCATGCTGGTACTGT
AGTTGGTAAATTAGAAGGTGATCCTTTGATGGTTAAAGGTTTCTACAACA
GTTTACTATTAACTCATTTAAAAATTAACCTAGCTGAAGGTCTATTCTTC
GATATGGATTGGGCAGCTCTTAGAAAGTGTGTTCCTGTAGCTTCTGGTGG
TATCCACTGTGGTCAAATGCACCAACTTCTTTACTACTTAGGTGATGATG
TGGTTTTACAATTTGGTGGTGGTACAATTGGTCATCCAGATGGTATTCAA
TCAGGTGCGACAGCTAACCGTGTTGCTTTAGAAGCTATGGTTTTAGCACG
TAATGAAGAACGTGATTATGTAGGTGAAGGTCCTGAAATTTTACGTACTG
CAGCAAAAACTTGTGGTCCATTAAAAGCAGCTTTAGATTTATGGAAAGAT
ATTACTTTCGATTACACTTCAACTGATACACCTGATTTCGTTGAAGTTGC
AACAGAAAGTAGATAA
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