prot_H-paniculata_contig5438.12887.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5438.12887.1
Unique Nameprot_H-paniculata_contig5438.12887.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length139
Homology
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A6H5L2Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q1_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.720e-48
Identity = 90/145 (62.07%), Postives = 110/145 (75.86%), Query Frame = 0
Query:    3 RRTLARGAASLAALTFGATALSGTSAELQHRMGK--------TIPGATATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGE-QLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 138
            RR+LARGAASLA  T GATALSG SA++QHR+          +IP A  +A AS+ +PF KR++EEKLA +PAFMVTN  GSPYL+P+  PGE Q+AVFFTN DDA  ML EMVQ  +Y+ EAR+LVVSMEKAYGM++ GP+ TG
Sbjct:  104 RRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPT-KPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247          
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: D7FZH1_ECTSI (Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 7.950e-47
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 0
Query:    1 GLRRTLARGAASLAALTFGATALSGTSAELQHRMGK--------TIPGATATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGE-QLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 138
            G RR+LARGAASLA  T GATALSG SA++QHR+          +IP A  +A AS+ +PF KR++EEKLA +PAFMVTN  GSPYL+P+  PGE Q+AVFFTN DDA  ML EMVQ  +Y+ EAR+LVVSMEKAYGM++ GP+ TG
Sbjct:  102 GARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPT-EPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247          
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A0G4ED78_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED78_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 5.080e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 0
Query:   35 GKTIPGATATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQG-PRGTG 138
            GK++          + K F+ R ++E+L++VP F++TN    PYLT    PGEQ A+ FT+ ++AN ML EMVQ      +AR+ V+S+EKA+   R+  PR TG
Sbjct:   50 GKSLSSMGRRVLPRLRKKFSSRPMDERLSSVPVFLITNSYALPYLT-QVRPGEQTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTG 153          
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A4D9CLW8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLW8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.330e-14
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 0
Query:   44 TARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 138
            +A A   KPF++R+L+EKLA+VP F+V N  GSPYL P    G  + V F +  DA  ML+ MVQNP    +ARVLV+ ++K   +++  PR  G
Sbjct:   47 SAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVP-LETGFDVGVVFLDPADAEEMLQSMVQNPQ-TADARVLVMGLDKGLELVQSEPRRNG 139          
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: W7TG29_9STRA (Tic22-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG29_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.840e-14
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 0
Query:   44 TARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 138
            +A A   KPF++R+L+EKLA+VP F+V N  GSPYL P    G  + V F +  DA  ML+ MVQNP    +ARVLV+ ++K   +++  PR  G
Sbjct:  146 SAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVP-LETGFDVGVVFLDPADAEEMLQSMVQNPQ-TADARVLVMGLDKGLELVQSEPRRNG 238          
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A7S2SNF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNF4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-13
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 0
Query:   43 ATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRG 136
            A A AS FK ++KR+L+E+ A VP F+VTN  G+PYL  S   G Q    F +++DA    +EM+Q      +ARVLVVSM++A  M+    RG
Sbjct:   92 AVASASAFKKYSKRTLKERFAGVPVFVVTNAQGAPYL--SMRQGVQQCFLFMDHEDAEQYQREMMQTGPSVADARVLVVSMDRALRMVWNPSRG 183          
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A7J7IP27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP27_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 7.000e-8
Identity = 30/87 (34.48%), Postives = 57/87 (65.52%), Query Frame = 0
Query:   53 FNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKE-ARVLVVSMEKAYGMIRQGPRGTG 138
            +++++L+EKLA VP F VTN +G P+L  +   G Q+ + F +  DA  ML+++ ++   E E AR+ V+ +++A+ M++  P+ +G
Sbjct:  135 YSRKTLDEKLAQVPVFAVTNESGQPFLA-AMERGTQVGLIFFDPSDAMKMLEDLKRSSGKEAEDARIFVMGLDRAFEMVKSKPQPSG 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L2Q1_9PHAE8.720e-4862.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZH1_ECTSI7.950e-4761.90Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A0G4ED78_VITBC5.080e-1540.95Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9CLW8_9STRA1.330e-1445.26Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TG29_9STRA2.840e-1445.26Tic22-like protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A7S2SNF4_9STRA3.800e-1344.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7J7IP27_9RHOD7.000e-834.48Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1350.100coord: 56..137
e-value: 6.0E-21
score: 76.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..138
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.512
IPR007378Tic22-likePFAMPF04278Tic22coord: 33..129
e-value: 8.8E-8
score: 31.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5438contigH-paniculata_contig5438:287..3292 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5438.12887.1mRNA_H-paniculata_contig5438.12887.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5438 287..3292 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5438.12887.1 ID=prot_H-paniculata_contig5438.12887.1|Name=mRNA_H-paniculata_contig5438.12887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
GLRRTLARGAASLAALTFGATALSGTSAELQHRMGKTIPGATATARASIF
KPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDAN
AMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007378Tic22-like