mRNA_H-paniculata_contig5438.12887.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5438.12887.1
Unique NamemRNA_H-paniculata_contig5438.12887.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A6H5L2Q1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q1_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.720e-48
Identity = 90/145 (62.07%), Postives = 110/145 (75.86%), Query Frame = 1 
Query:    7 RRTLARGAASLAALTFGATALSGTSAELQHRMGK--------TIPGATATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGE-QLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 414
            RR+LARGAASLA  T GATALSG SA++QHR+          +IP A  +A AS+ +PF KR++EEKLA +PAFMVTN  GSPYL+P+  PGE Q+AVFFTN DDA  ML EMVQ  +Y+ EAR+LVVSMEKAYGM++ GP+ TG
Sbjct:  104 RRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPT-KPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: D7FZH1_ECTSI (Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH1_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 7.950e-47
Identity = 91/147 (61.90%), Postives = 111/147 (75.51%), Query Frame = 1 
Query:    1 GLRRTLARGAASLAALTFGATALSGTSAELQHRMGK--------TIPGATATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGE-QLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 414
            G RR+LARGAASLA  T GATALSG SA++QHR+          +IP A  +A AS+ +PF KR++EEKLA +PAFMVTN  GSPYL+P+  PGE Q+AVFFTN DDA  ML EMVQ  +Y+ EAR+LVVSMEKAYGM++ GP+ TG
Sbjct:  102 GARRSLARGAASLATFTVGATALSGMSADVQHRLNSRDGAAVVVSIPAAMESAEASVLRPFEKRTVEEKLANLPAFMVTNKKGSPYLSPT-EPGEPQMAVFFTNVDDAKEMLMEMVQESTYQNEARILVVSMEKAYGMVKAGPKLTG 247
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A0G4ED78_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED78_VITBC)

HSP 1 Score: 79.3 bits (194), Expect = 5.080e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  103 GKTIPGATATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQG-PRGTG 414
            GK++          + K F+ R ++E+L++VP F++TN    PYLT    PGEQ A+ FT+ ++AN ML EMVQ      +AR+ V+S+EKA+   R+  PR TG
Sbjct:   50 GKSLSSMGRRVLPRLRKKFSSRPMDERLSSVPVFLITNSYALPYLT-QVRPGEQTALMFTDPEEANTMLNEMVQTAGPGADARLFVISLEKAWAYARRAEPRRTG 153
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A4D9CLW8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLW8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.330e-14
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:  130 TARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 414
            +A A   KPF++R+L+EKLA+VP F+V N  GSPYL P    G  + V F +  DA  ML+ MVQNP    +ARVLV+ ++K   +++  PR  G
Sbjct:   47 SAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVP-LETGFDVGVVFLDPADAEEMLQSMVQNPQ-TADARVLVMGLDKGLELVQSEPRRNG 139
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: W7TG29_9STRA (Tic22-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG29_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.840e-14
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:  130 TARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG 414
            +A A   KPF++R+L+EKLA+VP F+V N  GSPYL P    G  + V F +  DA  ML+ MVQNP    +ARVLV+ ++K   +++  PR  G
Sbjct:  146 SAEAFSLKPFSRRTLKEKLASVPCFLVCNQQGSPYLVP-LETGFDVGVVFLDPADAEEMLQSMVQNPQ-TADARVLVMGLDKGLELVQSEPRRNG 238
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A7S2SNF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNF4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.800e-13
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:  127 ATARASIFKPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRG 408
            A A AS FK ++KR+L+E+ A VP F+VTN  G+PYL  S   G Q    F +++DA    +EM+Q      +ARVLVVSM++A  M+    RG
Sbjct:   92 AVASASAFKKYSKRTLKERFAGVPVFVVTNAQGAPYL--SMRQGVQQCFLFMDHEDAEQYQREMMQTGPSVADARVLVVSMDRALRMVWNPSRG 183
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BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Match: A0A7J7IP27_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IP27_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 7.000e-8
Identity = 30/87 (34.48%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:  157 FNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDANAMLKEMVQNPSYEKE-ARVLVVSMEKAYGMIRQGPRGTG 414
            +++++L+EKLA VP F VTN +G P+L  +   G Q+ + F +  DA  ML+++ ++   E E AR+ V+ +++A+ M++  P+ +G
Sbjct:  135 YSRKTLDEKLAQVPVFAVTNESGQPFLA-AMERGTQVGLIFFDPSDAMKMLEDLKRSSGKEAEDARIFVMGLDRAFEMVKSKPQPSG 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5438.12887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L2Q1_9PHAE8.720e-4862.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZH1_ECTSI7.950e-4761.90Tic22-like n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A0G4ED78_VITBC5.080e-1540.95Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A4D9CLW8_9STRA1.330e-1445.26Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TG29_9STRA2.840e-1445.26Tic22-like protein n=1 Tax=Nannochloropsis gaditan... [more]
A0A7S2SNF4_9STRA3.800e-1344.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7J7IP27_9RHOD7.000e-834.48Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5438contigH-paniculata_contig5438:287..3292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue3.3e-39
Seed eggNOG ortholog2880.D7FZH1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Tic22-like family
EggNOG OGs2DZXZ@1,2S7E9@2759
Ec32 ortholog descriptionTic22-like
Ec32 orthologEc-23_002870.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930561.538849-CDS-H-paniculata_contig5438:286..4391622930561.538849-CDS-H-paniculata_contig5438:286..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 287..439 -
1691481349.1498392-CDS-H-paniculata_contig5438:286..4391691481349.1498392-CDS-H-paniculata_contig5438:286..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 287..439 -
1622930561.5598638-CDS-H-paniculata_contig5438:3028..32921622930561.5598638-CDS-H-paniculata_contig5438:3028..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 3029..3292 -
1691481349.160328-CDS-H-paniculata_contig5438:3028..32921691481349.160328-CDS-H-paniculata_contig5438:3028..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 3029..3292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5438.12887.1prot_H-paniculata_contig5438.12887.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5438 287..3292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5438.12887.1

>prot_H-paniculata_contig5438.12887.1 ID=prot_H-paniculata_contig5438.12887.1|Name=mRNA_H-paniculata_contig5438.12887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
GLRRTLARGAASLAALTFGATALSGTSAELQHRMGKTIPGATATARASIF
KPFNKRSLEEKLATVPAFMVTNINGSPYLTPSFVPGEQLAVFFTNYDDAN
AMLKEMVQNPSYEKEARVLVVSMEKAYGMIRQGPRGTG*
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mRNA from alignment at H-paniculata_contig5438:287..3292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5438.12887.1 ID=mRNA_H-paniculata_contig5438.12887.1|Name=mRNA_H-paniculata_contig5438.12887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3006bp|location=Sequence derived from alignment at H-paniculata_contig5438:287..3292- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGCGAAGGACGCTAGCTCGCGGAGCAGCGTCGCTGGCCGCCTTGAC
GTTCGGTGCCACCGCCCTGTCGGGCACGTCGGCCGAGCTGCAACATCGTA
TGGGCAAGACCATCCCCGGGGCGACCGCCACTGCTCGAGCCTCGATATTC
AAGCCTTTCAACAAGCGCAGCTTGGAGGAGAAGCTGGCCACTGTGCCCGC
CTTCATGGTGACCAACATTAACGGGTCGCCATACCTAACACCTTCTTTCG
TGCCGGGGGAGCAGGTGGGTTGCGTGCGCGGGGAGCGTTCTAGGTGACCT
CCTGAGTACCCATAAAAATAGAAGTTGGAGGTACTGTTTTATTAGCAAAC
GTTTTTCCCCATCGTTTCCCGGGAATTTAACTGAAAATAATATGAATATT
AATAATACACGATCAATAGTTTCAATGTTGCTGATTAATGATATTATCCA
CAATCTGAGCAAATAGTGGGGATGAATGCGTTGAGATAGTCCTGCTCTGC
GCTGGAGAAGGCTGCTTAGGAACGAAATATGATTTCTTTTTTTTTAATAA
CATTATATGATGCCGAGTGCTGCAGTCGTGGAGCCAGGTGAAAATGGAAG
CTAGGCGTTTGATATTGGAAGTGATCTGTGAGCCCTAGTTTTTTGTTAAC
AGTATTGACTAGAGATGCCGGCAAGACTGAGGTACGTGCCTACATGGCTT
TAGATGTAGTCTGTGAATAGGTGTTCTGTTCATCGAGTCTCGTGGGTTAT
CGGGGGTGAAATTTTAAACCAGTTATTTTTATGCTATTGACCTTGATGTA
TTTACGATAGGACGAACAACAACTCACCTGCCTGATGATTGTATGAATAT
GATAATTGCATTATAATGGACAGGTGTACGTATAACCTACACATATGGCT
TCGTGACGGTGGCTGTGGCTTGCTTGCGCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCACCACCACCCCCCAGTCTGAAACACACGCGAAAACACAC
CAAACTACCCCTAAAAATTAATTTTCTCTCTTTNNNNNNNNNNAATCCCC
CTGCCTTTTGTTTTTTTTGTTTATGTTATTGGATTTTAAGGGCCCGGTGT
ACTGCTATCCCACCCATTGGCGTTCGTGAGGGGGGGGGTTGGTTCGTTGC
GCCCCCCCCCCCCCCCCCCACGTAGGCACAAGCAACGTGCAATATTCGTT
AAATCCGGCGGTACAACATCCCATCAATCATTTAAAAGTTGCTCATCCTT
GTACATCCTCTAGTTAAGCAGAAGCCATAGTCAGTGGTCTTCAAATCGCA
CATCGCATGCACATGGACATAATACAAGGTGTTCGCTGTTTCTGGTCATG
CGAATTCCATAATTTTGTTGTAGATTTTTCATCATCTTTATTCTGATCGT
ACCTTTGAACGGCGATAAGTTGGGAATCGAAACAGGCACCATTATTTTAT
CGTAACGTCAGAATTACCGACAGGAAGGTTCGCGACAAGTGGACGTGATT
TTAATGTTGAAAATTGCACCCAATCATCTCTAGTAACCACTACCGGCGGT
AGATAGGGTCGTCACGTGGGGTAAAAATGTTGAAAGTACCCGGATGGGCG
ATCTAATTGCGCGGCACACTCCGGGGTACTTACAAGGCTGCAGGGAACCC
AATAATATTACAATGCGGAACATATTGATTCTTGGTATTTAACTCGTGAA
CTTTGTTTGACCAGTTACACCTAGCCCAGCTTGTAACTTGGATTTTTCGG
TACGACGGTCATTGTTGAATATCGAGTATAGAGGAGGGAGCAGAAGTAAT
ATTCACTTTTGGAATATCCGAAGGGAGATTATCTATACAAATTACCTCAT
TTATTTATGTCTTGGTGTACAACACTGCGGAGGTAGATCGCGATGTTGAA
CAGGTTTAGTAAAATGTAAAATACACGTCTCCGATTCGTTGTACAATTTG
AACTTATTTGAAATGCTTTTCCTTGTGTTTCGATGTGATTTACAACGCCG
GCCATACATACCCCCTTGTCGACTCCATTTTTCTGATGGGTGTATTCAAT
TGCGGATTTCATTCAGTTGTATAACCTCGACATGGGTACAACGGAGCTAT
GGTACTTACTCTGTGCCATAAATCAAGTCGGTTGAGTTTACAGAGGTACG
TAACCATCTACATTTTGGGAATTGATCCTCAAAAATTTTACTGAAATTGG
CGAAATCCGTCGGGAGCGCGCGCGGTGCGAAAAAAAAAAAAGCTGGCCGA
ACAATGGTAATATTTCGCCTATTTTGCCTATTTTCCCAACGGAAAAACGT
GAAATTGAAAAAAAAAATGTAAAATGGTCATAATATGCTCGACCTTGAGC
GATCAATCAGTATTTTTGATATACAAATCGGAATGCACTTTGGAAGATCG
CATACCAATTTATCGGACTTCACGTTGCCAACGATTCCAACCGCAGCCTC
TGAAAAGTTGTAGATATGGAAATATGATATACCAAATACAACCGACTTTG
TTTACGGCACAGAGGAAGTGTGAGGTTTTGAGTTATGGTGTAACTACTGA
CTGGCACGGTTAATTCGCTCATGATAATTTAAGTTTGTGAAATTGGAGGA
TTGTTTTGATTTTGCATGATGTCAGTCGTCCGTTCACAAGAGGACCATTT
CATCTTTTACCTACAGTAACACATGCGCGTGACACAGTAATACCCCCTGG
CGAAGGTCGCCGCGTGGCCGAAGAGGTTCGAGAAGCCCTGATACTTGATG
ATGATGGAGTAAAAAATTATGTAACGTCCTTCCCCCCCGCTTTCACTTTC
GCTCTCTCTCTCTCTCTCTGTGCGTTTGTTACCGTAAAACACTGCTTTCA
CAGCTAGCAGTGTTCTTCACCAACTACGACGACGCGAACGCGATGCTTAA
GGAGATGGTGCAGAATCCTTCCTACGAGAAGGAAGCTCGCGTCTTGGTCG
TTAGTATGGAGAAGGCGTACGGCATGATTAGGCAGGGACCGCGGGGCACA
GGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5438:287..3292-

>mRNA_H-paniculata_contig5438.12887.1 ID=mRNA_H-paniculata_contig5438.12887.1|Name=mRNA_H-paniculata_contig5438.12887.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig5438:287..3292- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCTGCGAAGGACGCTAGCTCGCGGAGCAGCGTCGCTGGCCGCCTTGAC
GTTCGGTGCCACCGCCCTGTCGGGCACGTCGGCCGAGCTGCAACATCGTA
TGGGCAAGACCATCCCCGGGGCGACCGCCACTGCTCGAGCCTCGATATTC
AAGCCTTTCAACAAGCGCAGCTTGGAGGAGAAGCTGGCCACTGTGCCCGC
CTTCATGGTGACCAACATTAACGGGTCGCCATACCTAACACCTTCTTTCG
TGCCGGGGGAGCAGGGGCTGCGAAGGACGCTAGCTCGCGGAGCAGCGTCG
CTGGCCGCCTTGACGTTCGGTGCCACCGCCCTGTCGGGCACGTCGGCCGA
GCTGCAACATCGTATGGGCAAGACCATCCCCGGGGCGACCGCCACTGCTC
GAGCCTCGATATTCAAGCCTTTCAACAAGCGCAGCTTGGAGGAGAAGCTG
GCCACTGTGCCCGCCTTCATGGTGACCAACATTAACGGGTCGCCATACCT
AACACCTTCTTTCGTGCCGGGGGAGCAGCTAGCAGTGTTCTTCACCAACT
ACGACGACGCGAACGCGATGCTTAAGGAGATGGTGCAGAATCCTTCCTAC
GAGAAGGAAGCTCGCGTCTTGGTCGTTAGTATGGAGAAGGCGTACGGCAT
GATTAGGCAGGGACCGCGGGGCACAGGGTGACTAGCAGTGTTCTTCACCA
ACTACGACGACGCGAACGCGATGCTTAAGGAGATGGTGCAGAATCCTTCC
TACGAGAAGGAAGCTCGCGTCTTGGTCGTTAGTATGGAGAAGGCGTACGG
CATGATTAGGCAGGGACCGCGGGGCACAGGGTGA
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