mRNA_H-paniculata_contig54348.12884.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE) HSP 1 Score: 132 bits (333), Expect = 7.510e-33 Identity = 77/214 (35.98%), Postives = 108/214 (50.47%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ G+S E +LPP W E G P + L HD R+ Q K+G ++K ++ + L++LP PP D+P+G E + A AR S G G T RA D AR +P E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 106 LNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 318
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 133 bits (335), Expect = 2.110e-32 Identity = 78/214 (36.45%), Postives = 108/214 (50.47%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ G+S E +LPP W E G P + L HD R+ Q K+G ++K ++ + L++LP PP D+P+G E + A AR S G G RA P D AR +P E+V R LGIE +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 853 LNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 1065
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE) HSP 1 Score: 132 bits (331), Expect = 6.560e-32 Identity = 79/214 (36.92%), Postives = 108/214 (50.47%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L + GVS + +LPP W E G P + L +D R+ Q K+G V+K ++ L+ L +LP PP SD+P+G E + A AR S G G RA P D AR +P E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 484 LNREHGVSVKILKGILPPSWVEWAFEPPGETGRRQ-PTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 696
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE) HSP 1 Score: 130 bits (328), Expect = 1.400e-31 Identity = 75/214 (35.05%), Postives = 107/214 (50.00%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ +S E ++PP W E G P + L HD R+ Q K+G ++K ++ + L++LP PP D+P+G E + A AR S G G RA P D AR +P E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 399 LNQEHAISVEILKGIIPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 611
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE) HSP 1 Score: 129 bits (325), Expect = 3.030e-31 Identity = 76/214 (35.51%), Postives = 107/214 (50.00%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ +S E +LPP W E G P + L HD R+ Q ++G V+K ++ + L++LP PP D+P+G E + A AR S G G RA P D AR +P E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 329 LNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHELGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 541
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE) HSP 1 Score: 129 bits (325), Expect = 4.560e-31 Identity = 75/214 (35.05%), Postives = 107/214 (50.00%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ +S E +LPP W E G P + L HD R+ Q K+G ++K ++ + L++LP PP D+P+G E + A AR S G G RA P D AR +P E+V R LG+E +LA +CP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 810 LNQEHAISVEILKGILPPSWVEWALEPAGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 1022
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE) HSP 1 Score: 123 bits (308), Expect = 5.960e-30 Identity = 76/214 (35.51%), Postives = 105/214 (49.07%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCGA----EDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ GVS E +LPP W E G P + L HD R+ Q K+G V K ++ + L+++P PP D+P+G E + A AR S G G RA P D AR +P E+V R LG+E +LA RCP C E +TT H R C G Q++ H+P + ++R L L +K VE G PFT +R+ M
Sbjct: 106 LNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAV-KIQLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREREIITTVHARTCPRDGEQVNMHEPSKYALSRALNGLRVKHDVESGAPFTGERNLSM 317
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE) HSP 1 Score: 123 bits (308), Expect = 7.800e-30 Identity = 75/214 (35.05%), Postives = 105/214 (49.07%), Query Frame = 1
Query: 1 LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L ++ GVS E +LPP W E P + L HD R+ Q K+G V K ++ + L++LP P D+P+G E + A AR S G G +A P + AR +P E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 8 LNQEHGVSVEILKGILPPSWVEWALEPAGETRRRQ-PTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 220
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5JNP7_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP7_9PHAE) HSP 1 Score: 117 bits (292), Expect = 6.100e-27 Identity = 66/173 (38.15%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 124 LGGHDAPGRISRRRQGKVGNLVHKDKIATLLSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
L HD R+ Q K+G V+K ++ + L++LP PP D+P+G E + A AR S G G RA P D AR + E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 279 LAAHDGESTTPRKAQHKLGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPSDRAREIRSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 451
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.430e-23 Identity = 58/143 (40.56%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 214 LSLLDNLPPADRPPGSDDPFGAIEPADAAKARFCSMSGSGALTVQRAQPYDSARTVPPAEYVLMERTFLGIEPYLAARCPCCG----AEDVTTRHTRICHGAGAQIDQHQPLLHVVTRLLKRLGIKSTVEDGDPFTADRDYRM 630
+ L++LP PP D+P+G E + A AR S G G RA P D AR +P E+V R LG+E +LA RCP C E +TT H R C GAQ++ H+PL + ++R L L +K VE G PFT +R+ M
Sbjct: 1 MESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSM 143 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54348.12884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig54348.12884.1 >prot_H-paniculata_contig54348.12884.1 ID=prot_H-paniculata_contig54348.12884.1|Name=mRNA_H-paniculata_contig54348.12884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=210bp LAEQGGVSAEQQAAVLPPGLFAWVHGGRSEDGSLPIPNIDVLGGHDAPGRback to top mRNA from alignment at H-paniculata_contig54348:448..1078+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig54348.12884.1 ID=mRNA_H-paniculata_contig54348.12884.1|Name=mRNA_H-paniculata_contig54348.12884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=631bp|location=Sequence derived from alignment at H-paniculata_contig54348:448..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig54348:448..1078+ >mRNA_H-paniculata_contig54348.12884.1 ID=mRNA_H-paniculata_contig54348.12884.1|Name=mRNA_H-paniculata_contig54348.12884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at H-paniculata_contig54348:448..1078+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |