prot_H-paniculata_contig5428.12876.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5428.12876.1
Unique Nameprot_H-paniculata_contig5428.12876.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length2293
Homology
BLAST of mRNA_H-paniculata_contig5428.12876.1 vs. uniprot
Match: A0A6H5KNX9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX9_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 3.240e-37
Identity = 235/786 (29.90%), Postives = 316/786 (40.20%), Query Frame = 0
Query: 1223 RKRSADSVALSPERF-----GSGGKRLK------------ASPYEGSTSVKV-----KTPDRAGYTLDAGEARGANDVVTGTPIVLRGGSGSGGSDNGRGSELSPGFSPAAACSHRAMGGHSDYDDGDWPVQSGTVYEYDEHPALDHSFDDFRG--DDMYYDTGD-RQPTPPVSMANTYRPVGISSVPVNTVVNPYERTSHLEIQPDADDALEPSPTTKTSVAKRATGQTLKEQGNVRPKKAACRPSSAMMGFGAPSRGNGLARGPSALGIGAVDTRKKESEYRASSNTILAAGRGTS-GSLSPVHGSV-NGIASYLTYEETLPSCLAPDTQEIDALQAEFVAKGALERGYPSTADMEIVDSVSAKRSRLPPVNRADDDDKEHNRSGR----------RLLSDAPKRSPVANKRPRSSRNTKV-----NEGDITVRQRKVEGTALDS-------SPVVLALLGCQEWELNRAKLLCSKLRQSHLHTQLVRGATHLVLGSAHTATMSGDDDDSDSDRSVRRQLVTHELAGYREAVMLGLWVLDFSWVEASLKLKAGESRRRSGGSGRREGAVAHPLLLGLAPARDFEVIGCFHKHDGCDPRRGRMRRAAETKLRDGFIGAERIFSGFDFHIVVAVAQTARSKTELLDGDEAISKLTRLLVLGGGEILMGGLSSRPAQEHEKRKHKRTAGSWSHQPFASEVGISSDDDNERSTVDETSG----------RVVVVALADKADGE-VSSQLARAALDRKNELSAVAAVSNEWVVRSIEDGSRLEFELYSL 1948
            RKRSAD   LSP        G+ GKR +            A P E ++ V+      K PD      DAG          G PI LRGGSG  GSD+   SE+       AA                W V+ G            H F D  G  +D   ++G  R P+P    +   RP     V      NPY   +HL +    DD  +P+ +    ++    G   K+  + R   AA RPS + MGFG+PS G G AR   +L          +S  R   N ILAAGR    G  +P   SV +   ++ ++ +     L PDT+E++ LQA    K A E+     A  E  +S     +        DDDD    R G+          R  S + K                      +EG  T  +R+      D        SPV++ LLGC   E  RA  LC++L Q    T+LV GATH+V+GS +T   +   D S S    R   V  +  G+     L         V+  ++   G   RR G S              ++P RDFE++GC   H+GC PRRGR+ R  +            +F G+ F ++      A   T  +DG    S L RLL LGGG IL    S  P          R A  +   PF SE    SDD+          G           VVV+AL D +DG  VS  LA+ A D+  EL A AAV   W +RS++ GSRL F+ + L
Sbjct: 1362 RKRSADYATLSPSSGLSCDPGNAGKRTRLTLPPDSAANPSARPREAASDVEASCNDDKPPDGGSPWQDAGRGN-----QQGRPIALRGGSGPPGSDDE--SEMPETDHDLAAVQDA------------WLVEGG------------HEFGDDGGYLEDQAEESGSGRLPSPAGGDSPPRRPRKNQEVD-----NPYAPQAHLNLSHGRDD-FQPAASADGMMSPSVGGVEAKKPRSSRT--AARRPSKSTMGFGSPSFG-GAARASLSLSGSRFAASLNDSNRRPIKNKILAAGREHGPGGTTPASLSVPDKSGTWSSFND-----LGPDTEEVENLQARLADKRAQEKTAAGPAASET-NSFDPSDTEYDEGGENDDDDSWAGRGGQSRGHRQGWDTRADSSSEKXXXXXXXXXXXXXXXXXXXXXXSEGKGTKLRREARHDGGDDGRPRRRRSPVLIVLLGCSPREQKRANELCARLGQHRPETELVSGATHVVIGSQNTRPANSSSDGSSSGNGSRSGAVVDDGRGFGGRHEL---------VKHEVEGNEGVRDRRGGVSSL------------MSPPRDFELVGCSENHEGCKPRRGRLNRGFKVPG---------VFHGYAFCVIAGGGAGASFST--VDGSR--SGLERLLRLGGGVILA---SVAP----------RAAEGFCDNPFGSEDMPDSDDEVVHVEAGSGDGGDNAAAAKERMVVVLALPDSSDGHGVSLSLAKIATDKCRELGAAAAVDRGWALRSLDRGSRLPFDGHDL 2054          
BLAST of mRNA_H-paniculata_contig5428.12876.1 vs. uniprot
Match: D7FV25_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV25_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.660e-28
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 0
Query:    1 MPSFEKERDRHTLVHLEGLRKGLLCEICGNFLRDAYNLPCGHNFCLDCVDDALADSGMCPSCKNPAWSKDTVKNAHADSAVHDWVNHCETKYQHFVAQAAEDDGDESD 108
            M S EKE DR  + ++   RKGLLC IC  FL D YNLPCGH+FC +C+DDALA+   CP C NPAW KDT+K A  DS V DWV +CE  YQ  VA+ A  DG+ SD
Sbjct:    1 MVSLEKESDRQAMENVREFRKGLLCSICNEFLSDTYNLPCGHSFCRECIDDALAERNSCPDCMNPAWQKDTLKMALTDSTVQDWVANCERLYQAHVARQAARDGESSD 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5428.12876.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNX9_9PHAE3.240e-3729.90RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FV25_ECTSI1.660e-2857.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 25..62
e-value: 1.1E-5
score: 34.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 25..63
score: 11.752
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 25..62
e-value: 3.3E-8
score: 33.2
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 17..89
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 3..115
e-value: 5.1E-15
score: 57.3
IPR039577E3 ubiquitin-protein ligase Rad18PANTHERPTHR14134E3 UBIQUITIN-PROTEIN LIGASE RAD18coord: 10..296
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 40..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5428contigH-paniculata_contig5428:1961..12870 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5428.12876.1mRNA_H-paniculata_contig5428.12876.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5428 1898..13907 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5428.12876.1 ID=prot_H-paniculata_contig5428.12876.1|Name=mRNA_H-paniculata_contig5428.12876.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2293bp
MPSFEKERDRHTLVHLEGLRKGLLCEICGNFLRDAYNLPCGHNFCLDCVD
DALADSGMCPSCKNPAWSKDTVKNAHADSAVHDWVNHCETKYQHFVAQAA
EDDGDESDSVLSEASENSIDNEEETSPRKPSPVPTRHKKKTGKEDDTFTM
ADAKASANDSSSEVRVNRSISRPQKLLEGPVSCTTNTPSKRPAGTMVDHS
PSTPEQEDGSIPSPSSCSGSSNAAPGRARSFLESGEAEVNPSSGRSIVHT
RPPSTSPAVRYDQAQTANEAGTVDTVTEETCRPATPGKPHCKHSEKDSSS
GETSAERSEKRQLATPRLEAPRFPHINSGDSKASVPQDPLVARGRGNPGL
SFSHAPAQTSSGATLLSLTANWQNKADEVLPPRFSHFSESLPDTCDVLDL
DSPQRSSAKSIFLIATPPILKSPPAEVERVEPTSSKLVLRRSSSQDGSGE
GKEQRCAEADGRSPAEGVPMRGQEDSSVGVAQRTDHLEASYNQHQSCSEI
ASIQESQGRISVRCDGEDDTVGSLEPNSERPGNEFDAQCQDGDDIGDDDD
DSTDLDEPPPKDKDDLVSPAQPSAHCNNGAAGSVVGVDGDGDNDSLATAS
PPCSIGARREGEKIDRTLSPASPDSASLPILFTEKNEGGRAAKGGPTRPE
HAKVDEDTKEQCESPEIVFSCAVKRSVQQHVSPVSSSSYLRSMSLDPEAQ
SKRSVPVPRSSRLWGDDFSPARRSNPRAQENGSTNVYDQLEVAPTETHQY
SGSSTAGSAFRKDYDLEQVTLGASRKRSMCHAAGDILSAAKNGFPTATET
KISTSQRPFETLDVSRLNPTVNERGQDESDSTIAADDGMDDASRTESLLD
VPRNRAGIFKSPSQDIEQKARGSDHAAGWKQCGTSGKNLYVPETLAPNSL
TMDDFPAAKDTTSCLEDECGDRGRQQVPETAGTMVVMGPDMESQVQETLA
SGGVVSETNKDSLSEDVRSYRLSEGYGQQAETSRAASPRTETADGSDAED
IRAVDPTPRQDVDEAEIGVVQNRERCTTKFPAVNTAEKSTMAKMAAPAKR
FREQENDRSASLRSVQETASLHDLSQEEPETLVYQEVPETAVYQEVPETA
VYQEVPETVVSQEVPETVVSQEVPETVVPQEVSETVGAVCEMNDFAVEAE
NNRQTAESSDETRNSSSLQTSQVPETPQLLPTGSTENQNTADDAIGGGSD
DGNAGGKDVAIGTPVANSSESSRKRSADSVALSPERFGSGGKRLKASPYE
GSTSVKVKTPDRAGYTLDAGEARGANDVVTGTPIVLRGGSGSGGSDNGRG
SELSPGFSPAAACSHRAMGGHSDYDDGDWPVQSGTVYEYDEHPALDHSFD
DFRGDDMYYDTGDRQPTPPVSMANTYRPVGISSVPVNTVVNPYERTSHLE
IQPDADDALEPSPTTKTSVAKRATGQTLKEQGNVRPKKAACRPSSAMMGF
GAPSRGNGLARGPSALGIGAVDTRKKESEYRASSNTILAAGRGTSGSLSP
VHGSVNGIASYLTYEETLPSCLAPDTQEIDALQAEFVAKGALERGYPSTA
DMEIVDSVSAKRSRLPPVNRADDDDKEHNRSGRRLLSDAPKRSPVANKRP
RSSRNTKVNEGDITVRQRKVEGTALDSSPVVLALLGCQEWELNRAKLLCS
KLRQSHLHTQLVRGATHLVLGSAHTATMSGDDDDSDSDRSVRRQLVTHEL
AGYREAVMLGLWVLDFSWVEASLKLKAGESRRRSGGSGRREGAVAHPLLL
GLAPARDFEVIGCFHKHDGCDPRRGRMRRAAETKLRDGFIGAERIFSGFD
FHIVVAVAQTARSKTELLDGDEAISKLTRLLVLGGGEILMGGLSSRPAQE
HEKRKHKRTAGSWSHQPFASEVGISSDDDNERSTVDETSGRVVVVALADK
ADGEVSSQLARAALDRKNELSAVAAVSNEWVVRSIEDGSRLEFELYSLRT
NHSQKRSRSDVAPSISPQKLLKSRLALDSFTARDGLPAAKMPSEGKETGE
EEQPRRNDVQRVLRRSSHSKKLQLRRAGGSGVGGSREVVINVDKMVGHGS
GQSRPRLSLQAQTPADAMSAAEKKSAHIRLEAQKVIDSGHVAEQGGMLKE
RRTREREDVGNTRRTSEGSTVFKLTRVGDSKKVASEDVQIGPAEFWDKNY
SANLMKKAGIEEDPNDKGGRDYNALNTLEKRLWQVLHDAGYLQMPREQEL
GEFWFECVYDGIIGKRASRWHGEAKERGCPMKVIRKVFTKEDGQIFSENV
EQRLRELEAGEDFRPWQGDNANEAGAKARAEGSSIGDALQVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR039577Rad18
IPR017907Znf_RING_CS