mRNA_H-paniculata_contig5425.12873.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5425.12873.1
Unique NamemRNA_H-paniculata_contig5425.12873.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5425.12873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5425contigH-paniculata_contig5425:6668..7200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.7802913-UTR-H-paniculata_contig5425:6667..68701622930558.7802913-UTR-H-paniculata_contig5425:6667..6870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5425 6668..6870 +
1691481347.724826-UTR-H-paniculata_contig5425:6667..68701691481347.724826-UTR-H-paniculata_contig5425:6667..6870Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5425 6668..6870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930558.796605-CDS-H-paniculata_contig5425:6870..72001622930558.796605-CDS-H-paniculata_contig5425:6870..7200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5425 6871..7200 +
1691481347.7392223-CDS-H-paniculata_contig5425:6870..72001691481347.7392223-CDS-H-paniculata_contig5425:6870..7200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5425 6871..7200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5425.12873.1prot_H-paniculata_contig5425.12873.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5425 6871..7200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5425.12873.1

>prot_H-paniculata_contig5425.12873.1 ID=prot_H-paniculata_contig5425.12873.1|Name=mRNA_H-paniculata_contig5425.12873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MFLINADRKIALYLAPRKIERRPCHNVLQGRKHITHTRLRTAKGCYGILP
QTRTTGSTLVHCGNGEIDTNGDGASVFCNSCGTDAPNDIPPYISFDASPP
QLSTLIYHT*
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mRNA from alignment at H-paniculata_contig5425:6668..7200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5425.12873.1 ID=mRNA_H-paniculata_contig5425.12873.1|Name=mRNA_H-paniculata_contig5425.12873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=533bp|location=Sequence derived from alignment at H-paniculata_contig5425:6668..7200+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAAATTTGCACCCAAAGGAAGGGGCTGCTAAAATGGTCCTAAGCGTGGC
CTTTACGAACAAAGCACAGCTACATAACTGCCCGTCCTCTACAGCCTTTC
ATGCCTGTTCTGCGCTCTTGGCCCCAGTTGATATACATAGTGCAGAGATA
TACAACAAAGGAATAGGGCAAAGACTGTCATAGACAATCGTCATCCAGGT
CGGATGTTCTTGATAAACGCTGATCGAAAAATCGCTTTATATCTGGCACC
TCGTAAAATAGAACGCCGACCGTGCCACAATGTGCTGCAGGGCCGCAAAC
ACATCACACATACCAGGCTTAGGACTGCAAAGGGCTGTTACGGCATCCTC
CCACAAACACGGACAACAGGAAGCACGCTGGTTCATTGTGGGAACGGCGA
GATCGATACAAACGGCGATGGCGCTTCTGTATTTTGCAACAGCTGCGGCA
CGGATGCTCCAAATGACATCCCACCTTACATCAGTTTCGATGCATCCCCT
CCACAGCTTTCCACACTGATTTATCATACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5425:6668..7200+

>mRNA_H-paniculata_contig5425.12873.1 ID=mRNA_H-paniculata_contig5425.12873.1|Name=mRNA_H-paniculata_contig5425.12873.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig5425:6668..7200+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCTTGATAAACGCTGATCGAAAAATCGCTTTATATCTGGCACCTCG
TAAAATAGAACGCCGACCGTGCCACAATGTGCTGCAGGGCCGCAAACACA
TCACACATACCAGGCTTAGGACTGCAAAGGGCTGTTACGGCATCCTCCCA
CAAACACGGACAACAGGAAGCACGCTGGTTCATTGTGGGAACGGCGAGAT
CGATACAAACGGCGATGGCGCTTCTGTATTTTGCAACAGCTGCGGCACGG
ATGCTCCAAATGACATCCCACCTTACATCAGTTTCGATGCATCCCCTCCA
CAGCTTTCCACACTGATTTATCATACATGAATGTTCTTGATAAACGCTGA
TCGAAAAATCGCTTTATATCTGGCACCTCGTAAAATAGAACGCCGACCGT
GCCACAATGTGCTGCAGGGCCGCAAACACATCACACATACCAGGCTTAGG
ACTGCAAAGGGCTGTTACGGCATCCTCCCACAAACACGGACAACAGGAAG
CACGCTGGTTCATTGTGGGAACGGCGAGATCGATACAAACGGCGATGGCG
CTTCTGTATTTTGCAACAGCTGCGGCACGGATGCTCCAAATGACATCCCA
CCTTACATCAGTTTCGATGCATCCCCTCCACAGCTTTCCACACTGATTTA
TCATACATGA
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