mRNA_H-paniculata_contig5416.12861.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5416.12861.1
Unique NamemRNA_H-paniculata_contig5416.12861.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5416.12861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5416contigH-paniculata_contig5416:464..1137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5416.12861.1prot_H-paniculata_contig5416.12861.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5416 523..885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930557.5164144-UTR-H-paniculata_contig5416:463..5221622930557.5164144-UTR-H-paniculata_contig5416:463..522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5416 464..522 +
1691481347.1769056-UTR-H-paniculata_contig5416:463..5221691481347.1769056-UTR-H-paniculata_contig5416:463..522Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5416 464..522 +
1622930557.5505242-UTR-H-paniculata_contig5416:885..11371622930557.5505242-UTR-H-paniculata_contig5416:885..1137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5416 886..1137 +
1691481347.1984103-UTR-H-paniculata_contig5416:885..11371691481347.1984103-UTR-H-paniculata_contig5416:885..1137Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5416 886..1137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930557.5336835-CDS-H-paniculata_contig5416:522..8851622930557.5336835-CDS-H-paniculata_contig5416:522..885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5416 523..885 +
1691481347.1886911-CDS-H-paniculata_contig5416:522..8851691481347.1886911-CDS-H-paniculata_contig5416:522..885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5416 523..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5416.12861.1

>prot_H-paniculata_contig5416.12861.1 ID=prot_H-paniculata_contig5416.12861.1|Name=mRNA_H-paniculata_contig5416.12861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MTPHLGESSPHRRKKKSEHNNIIVETYFSCRWHQYEVFLDPSNFESRNGC
MMHFDRQLNAVIVRQGCPCRIIDLCTRKGKKNAHCEFTKTSLRLDTPVSV
GFFNCEYYTGDRFIHHGHYK*
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mRNA from alignment at H-paniculata_contig5416:464..1137+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5416.12861.1 ID=mRNA_H-paniculata_contig5416.12861.1|Name=mRNA_H-paniculata_contig5416.12861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=674bp|location=Sequence derived from alignment at H-paniculata_contig5416:464..1137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTACCCATTCGGGCGTCCAAGTCCGTGTGAACATCCGCCAGGTGAAAAA
ACTAGCTTCATGACCCCACACTTAGGTGAATCTAGTCCCCATCGAAGAAA
GAAAAAAAGCGAGCACAACAACATTATTGTCGAAACATATTTTTCATGTA
GATGGCATCAATATGAGGTTTTCCTCGATCCATCCAACTTCGAATCTCGA
AATGGATGTATGATGCATTTTGACCGACAGCTCAACGCTGTCATTGTTCG
TCAAGGGTGCCCATGTCGAATCATCGATCTTTGCACTCGAAAGGGTAAAA
AAAACGCTCATTGTGAGTTCACCAAAACGTCGTTGAGATTAGATACACCT
GTCAGCGTCGGTTTCTTCAATTGTGAGTATTATACAGGTGATCGATTTAT
TCATCATGGCCACTATAAATAGTCACAACGATGAAATGACTAGCTCGAGC
ATGTACCGAAGCAGTGGCGATTAAACGTGCCCAAAACAACATCATCATGC
CAGTAGGGTTCGTGTTGAACTTTTTGCTCTTCTCCCCAAACCTCTACTCC
ACAGCTGGTTACCATACTCGCATCACAAACCATGTAACACCACCGACCCC
CTCTCCAAAGAAAAAGCCAATGATAACACCATTCAGCCATCTATAGACAA
AGCACAACTCCTAGCCAAACCTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5416:464..1137+

>mRNA_H-paniculata_contig5416.12861.1 ID=mRNA_H-paniculata_contig5416.12861.1|Name=mRNA_H-paniculata_contig5416.12861.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig5416:464..1137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCCCACACTTAGGTGAATCTAGTCCCCATCGAAGAAAGAAAAAAAG
CGAGCACAACAACATTATTGTCGAAACATATTTTTCATGTAGATGGCATC
AATATGAGGTTTTCCTCGATCCATCCAACTTCGAATCTCGAAATGGATGT
ATGATGCATTTTGACCGACAGCTCAACGCTGTCATTGTTCGTCAAGGGTG
CCCATGTCGAATCATCGATCTTTGCACTCGAAAGGGTAAAAAAAACGCTC
ATTGTGAGTTCACCAAAACGTCGTTGAGATTAGATACACCTGTCAGCGTC
GGTTTCTTCAATTGTGAGTATTATACAGGTGATCGATTTATTCATCATGG
CCACTATAAATAGATGACCCCACACTTAGGTGAATCTAGTCCCCATCGAA
GAAAGAAAAAAAGCGAGCACAACAACATTATTGTCGAAACATATTTTTCA
TGTAGATGGCATCAATATGAGGTTTTCCTCGATCCATCCAACTTCGAATC
TCGAAATGGATGTATGATGCATTTTGACCGACAGCTCAACGCTGTCATTG
TTCGTCAAGGGTGCCCATGTCGAATCATCGATCTTTGCACTCGAAAGGGT
AAAAAAAACGCTCATTGTGAGTTCACCAAAACGTCGTTGAGATTAGATAC
ACCTGTCAGCGTCGGTTTCTTCAATTGTGAGTATTATACAGGTGATCGAT
TTATTCATCATGGCCACTATAAATAG
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