prot_H-paniculata_contig5413.12858.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5413.12858.1
Unique Nameprot_H-paniculata_contig5413.12858.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length179
Homology
BLAST of mRNA_H-paniculata_contig5413.12858.1 vs. uniprot
Match: D8LEE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE4_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 2.090e-58
Identity = 102/163 (62.58%), Postives = 122/163 (74.85%), Query Frame = 0
Query:   15 LSVCSKGLSETKFRQFGQVSMGRCGDEDGDSFRLCDLWVAPHTLTAVAFPGDVTYIRVEQCVLISXXXXXXXXXXXXXXXXXXQEIGECLSNKMPLEYYGTPLLWPSAIDVEYSTATLCEKDEHCPGSFCDLQQQPRTCAPKLGEHFNRSGSDFMDPRWKLLD 177
            +SVC    ++  F     VSM RC ++D   FR+CDL +AP  LTAVAFP D TY+RV+QCVL+   XXXXXXXXXXXXXXXX E+ ECL N +P EYYGTP  WPSA+DV+YS A LCEKD HCPGSFC  QQ+PR CAPKL EHF +SG  F+DPRW++L+
Sbjct:   16 MSVCG---NDCTFEYSNPVSMERCSEDD---FRVCDLAIAPRALTAVAFPPDTTYLRVQQCVLVETAXXXXXXXXXXXXXXXXXEVWECLENPVPAEYYGTPYHWPSAVDVDYSAAALCEKDSHCPGSFCSSQQEPRICAPKLEEHFQQSGEHFLDPRWEILN 172          
BLAST of mRNA_H-paniculata_contig5413.12858.1 vs. uniprot
Match: A0A7S2CVA0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVA0_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.040e-45
Identity = 77/178 (43.26%), Postives = 100/178 (56.18%), Query Frame = 0
Query:    2 LLPVNNFGSNYLQLSVCSKGLSETKFRQFGQVSMGRCGDEDGDSFRLCDLWVAPHTLTAVAFPGDVTYIRVEQCVLISXXXXXXXXXXXXXXXXXXQE-----IGECLSNKMPLEYYGTPLLWPSAIDVEYSTATLCEKDEHCPGSFCDLQQQPRTCAPKLGEHFN---RSGSDFMDP 171
            +LPVNNFG NYLQ SVC +G +  +  +F QVSM RC   D  SF +C  W+ P+T TA+A   + +YIR+E+CV +                          + ECL    P+EYYGT  LWPS IDVEY+ A  CE DE C GS+CD    P  CAPK  +HF+    +G D++DP
Sbjct:  110 VLPVNNFGENYLQFSVCHQGPNSHRLSKFSQVSMERC---DESSFHVCPYWIPPNTFTALAISANASYIRMERCVYVDYNEDAPTPSPTESGTADDSSGDDNFVAECLKEPKPVEYYGTRTLWPSFIDVEYAGAMYCESDEQCRGSYCDTNHVPPKCAPKATKHFDVGENAGRDYLDP 284          
BLAST of mRNA_H-paniculata_contig5413.12858.1 vs. uniprot
Match: A0A7S2SLL9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLL9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 6.410e-39
Identity = 68/170 (40.00%), Postives = 91/170 (53.53%), Query Frame = 0
Query:    2 LLPVNNFGSNYLQLSVCSKGLSETKFRQFGQVSMGRCGDEDGDSFRLCDLWVAPHTLTAVAFPGDVTYIRVEQCVLISXXXXXXXXXXXXXXXXXXQEIGECLSNKMPLEYYGTPLLWPSAIDVEYSTATLCEKDEHCPGSFCDLQQQPRTCAPKLGEHFNRSGSDFMDP 171
            +LPVNNFG+NY+Q SVC  G+      +F  V M RC D    +F++C  W+ P T T +A P + TYI++E+ V +                     +   L N  P EYYGT  +WPS ID+E++    C  DE C GS+CD    P  CAPK  +HF RS + FMDP
Sbjct:   86 ILPVNNFGANYIQFSVCDLGIDLDILSRFETVRMRRCDDA---TFKVCPFWIPPRTFTGLAIPKNSTYIKMERTVYLQKRLADEWNVSWTRTDDF---VAAVLRNPPPEEYYGTEEMWPSTIDIEFAENHFCSSDEQCLGSYCDRSHVPPKCAPKSIKHFMRSAASFMDP 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5413.12858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LEE4_ECTSI2.090e-5862.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CVA0_9STRA1.040e-4543.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2SLL9_9STRA6.410e-3940.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5413contigH-paniculata_contig5413:4037..11603 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5413.12858.1mRNA_H-paniculata_contig5413.12858.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5413 4037..11603 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5413.12858.1 ID=prot_H-paniculata_contig5413.12858.1|Name=mRNA_H-paniculata_contig5413.12858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
ILLPVNNFGSNYLQLSVCSKGLSETKFRQFGQVSMGRCGDEDGDSFRLCD
LWVAPHTLTAVAFPGDVTYIRVEQCVLISSSSSSGGGGGGDGSSEEEQEI
GECLSNKMPLEYYGTPLLWPSAIDVEYSTATLCEKDEHCPGSFCDLQQQP
RTCAPKLGEHFNRSGSDFMDPRWKLLDP*
back to top