mRNA_H-paniculata_contig54063.12849.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54063.12849.1
Unique NamemRNA_H-paniculata_contig54063.12849.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.350e-30
Identity = 59/104 (56.73%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E++SL    VY L+P T VP GH +IGS+ + ++K   + K R+V  GW QVPGRDCGGTFAP+CRLQSIRM  AIAAE +L+  +LD  TAFL AD+ E V+V
Sbjct:  324 EIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVKPENTHKARLVAKGWNQVPGRDCGGTFAPVCRLQSIRMVFAIAAEKDLDVIQLDVKTAFLYADIEENVFV 427
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BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.640e-28
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E+ SL    VY L+P T VP G K I S+ + + KAGGS KGR+V  GW QVPG DCG T+AP+CR QSIRM   IA ++NLE  ++D +TAFL AD++E V+V
Sbjct:  481 EIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKAGGSFKGRLVAQGWNQVPGLDCGNTYAPVCRFQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 584
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BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.520e-27
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E+ SL    VY L+P T VP G K I S+ + + KA GS KGR+V  GW QVPG DCG T+AP+CRLQSIRM   I  ++NLE  ++D +TAF  AD++E V+V
Sbjct:   72 EIASLKERQVYKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIVVQFNLELDQMDVSTAFFYADILENVFV 175
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BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 3.230e-27
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E+ SL    V+ L+P T VP G K I SR + + K  GS KGR+V  GW QVPG DCG T+AP+CRLQSIRM   IA ++NLE  ++D +TAFL AD++E V+V
Sbjct:  858 EIASLKERQVFKLVPRTAVPPGRKRIKSRWVFKRKVDGSFKGRLVAQGWNQVPGLDCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDVSTAFLYADILENVFV 961
[Close]
BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5KWT4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 4.220e-26
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E+ SL    V+ L+P T VP G K I S+ + + KA GS KGR+VV GW QVPG D G TFAP+CRLQSIRM    A ++NLE  ++D +TAFL AD++E V+V
Sbjct:   72 EIASLKERQVHKLVPRTAVPPGRKRIKSKWVFKRKADGSFKGRLVVQGWNQVPGLDYGSTFAPVCRLQSIRMLACTAVQFNLELDQMDVSTAFLYADILENVFV 175
[Close]
BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.260e-25
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E++SL+   VY L+P + VP G K I S+ + + KA G+ KGR+V  GW QVPG DCG T+AP+CR+QS+RM   I  E+NL   ++D +TAFL AD+ E+V+V
Sbjct:  152 EMKSLSNRKVYKLVPRSAVPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 255
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BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.410e-25
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E+ SL    VY L+P T VP G K   S+ + + KA GS KGR+V  GW QVPG  CG T+AP+CRLQSIRM   IA ++NLE  ++D  TAFL  D++E V+V
Sbjct:  657 EIASLKERQVYKLVPPTAVPPGRKRTTSKWVFKRKADGSFKGRLVAQGWNQVPGLGCGSTYAPVCRLQSIRMLACIAVQFNLELDQIDVFTAFLYVDILENVFV 760
[Close]
BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.650e-25
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVY 309
            E+ SL    +Y L+P T VP G K   S+ + + KA GS KGR+V  GW Q PG  CG T+AP+CRLQSIRM   IA ++NLE  ++D +T FL+AD++E VY
Sbjct: 1011 EIASLKERQLYELVPRTAVPPGRKRTKSKWVFKSKADGSFKGRLVAQGWNQGPGLHCGSTYAPVCRLQSIRMLACIAVQFNLELDQMDMSTTFLHADILENVY 1113
[Close]
BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.230e-24
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E++SL+   VY L+P + VP   K I S+ + + KA G+ KGR+V  GW QVPG DCG T+AP+CR+QS+RM   I  E+NL   ++D +TAFL AD+ E+V+V
Sbjct: 1173 EMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 1276
[Close]
BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.230e-24
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:    1 EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWGQVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVEKVYV 312
            E++SL+   VY L+P + VP   K I S+ + + KA G+ KGR+V  GW QVPG DCG T+AP+CR+QS+RM   I  E+NL   ++D +TAFL AD+ E+V+V
Sbjct: 1338 EMKSLSDRKVYKLVPRSAVPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFV 1441
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54063.12849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE3.350e-3056.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL37_9PHAE2.640e-2854.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KPN4_9PHAE2.520e-2752.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIN1_9PHAE3.230e-2753.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWT4_9PHAE4.220e-2653.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.260e-2550.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE3.410e-2551.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC75_9PHAE4.650e-2550.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE2.230e-2449.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE2.230e-2449.04Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54063contigH-paniculata_contig54063:5..316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog36914.XP_001527393.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930555.7526948-CDS-H-paniculata_contig54063:4..3161622930555.7526948-CDS-H-paniculata_contig54063:4..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54063 5..316 -
1691481346.3664567-CDS-H-paniculata_contig54063:4..3161691481346.3664567-CDS-H-paniculata_contig54063:4..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54063 5..316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54063.12849.1prot_H-paniculata_contig54063.12849.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54063 5..316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54063.12849.1

>prot_H-paniculata_contig54063.12849.1 ID=prot_H-paniculata_contig54063.12849.1|Name=mRNA_H-paniculata_contig54063.12849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
EVRSLNTNNVYTLLPATFVPSGHKIIGSRSIIEIKAGGSKKGRIVVLGWG
QVPGRDCGGTFAPICRLQSIRMALAIAAEYNLECWKLDHNTAFLNADVVE
KVYV
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mRNA from alignment at H-paniculata_contig54063:5..316-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54063.12849.1 ID=mRNA_H-paniculata_contig54063.12849.1|Name=mRNA_H-paniculata_contig54063.12849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at H-paniculata_contig54063:5..316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGAGAAGCCTGAACACGAACAACGTCTACACTCTCTTGCCGGCGAC
CTTTGTCCCCAGCGGCCACAAGATTATTGGCTCTCGATCGATCATCGAGA
TCAAGGCCGGCGGCTCAAAGAAGGGACGCATCGTTGTGCTAGGATGGGGT
CAAGTGCCCGGCCGTGATTGCGGCGGGACGTTCGCTCCGATCTGCAGGCT
CCAGAGCATCCGCATGGCGCTGGCGATAGCGGCGGAATACAATCTGGAGT
GCTGGAAACTCGACCATAACACCGCGTTTCTGAACGCTGACGTCGTGGAG
AAGGTGTACGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig54063:5..316-

>mRNA_H-paniculata_contig54063.12849.1 ID=mRNA_H-paniculata_contig54063.12849.1|Name=mRNA_H-paniculata_contig54063.12849.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig54063:5..316- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTGAGAAGCCTGAACACGAACAACGTCTACACTCTCTTGCCGGCGAC
CTTTGTCCCCAGCGGCCACAAGATTATTGGCTCTCGATCGATCATCGAGA
TCAAGGCCGGCGGCTCAAAGAAGGGACGCATCGTTGTGCTAGGATGGGGT
CAAGTGCCCGGCCGTGATTGCGGCGGGACGTTCGCTCCGATCTGCAGGCT
CCAGAGCATCCGCATGGCGCTGGCGATAGCGGCGGAATACAATCTGGAGT
GCTGGAAACTCGACCATAACACCGCGTTTCTGAACGCTGACGTCGTGGAG
AAGGTGTACGTCGAAGTGAGAAGCCTGAACACGAACAACGTCTACACTCT
CTTGCCGGCGACCTTTGTCCCCAGCGGCCACAAGATTATTGGCTCTCGAT
CGATCATCGAGATCAAGGCCGGCGGCTCAAAGAAGGGACGCATCGTTGTG
CTAGGATGGGGTCAAGTGCCCGGCCGTGATTGCGGCGGGACGTTCGCTCC
GATCTGCAGGCTCCAGAGCATCCGCATGGCGCTGGCGATAGCGGCGGAAT
ACAATCTGGAGTGCTGGAAACTCGACCATAACACCGCGTTTCTGAACGCT
GACGTCGTGGAGAAGGTGTACGTC
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