mRNA_H-paniculata_contig53989.12826.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53989.12826.1
Unique NamemRNA_H-paniculata_contig53989.12826.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53989.12826.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.530e-13
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MMGALDSLHRIFGAEGRAVAAARSVGLSALNVTGPVKRRLALHAMGG 141
            MMGALD LHR+FG++ RAVAAARS GLSALN  GP+KRRLA HAMGG
Sbjct:  429 MMGALDVLHRLFGSDARAVAAARSAGLSALNAAGPLKRRLARHAMGG 475
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BLAST of mRNA_H-paniculata_contig53989.12826.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.540e-13
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 MMGALDSLHRIFGAEGRAVAAARSVGLSALNVTGPVKRRLALHAMGG 141
            MMGALD LHR+FG++ RAVAAARS GLSALN  GP+KRRLA HAMGG
Sbjct:  527 MMGALDVLHRLFGSDARAVAAARSAGLSALNAAGPLKRRLARHAMGG 573
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BLAST of mRNA_H-paniculata_contig53989.12826.1 vs. uniprot
Match: A4S3G5_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S3G5_OSTLU)

HSP 1 Score: 52.8 bits (125), Expect = 1.300e-6
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 MMGALDSLHRIFGAEGRAVAAARSVGLSALNVTGPVKRRLALHAMGGA 144
            MM ALD L ++F  +   VA ARS+GL+A+N TGPV+R++A +AMGGA
Sbjct:  464 MMAALDGLQKLFANDTYPVALARSLGLAAVNATGPVRRKIAWYAMGGA 511
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BLAST of mRNA_H-paniculata_contig53989.12826.1 vs. uniprot
Match: A0A7S0IF53_MICPS (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=3 Tax=Micromonas TaxID=38832 RepID=A0A7S0IF53_MICPS)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 MMGALDSLHRIFGAEGRAVAAARSVGLSALNVTGPVKRRLALHAMGGA 144
            MM ALD L R+F ++   VA AR  GL+ +N  GP++RR+A +AMGGA
Sbjct:  489 MMAALDGLQRLFASDQPLVAWARGAGLAGVNALGPIRRRIARYAMGGA 536
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53989.12826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUH3_9PHAE1.530e-1378.72FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
D7G1J7_ECTSI1.540e-1378.72Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A4S3G5_OSTLU1.300e-656.25Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A7S0IF53_MICPS2.180e-552.08Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53989contigH-paniculata_contig53989:192..350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.2e-11
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Exons1
Model size159
Cds size159
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.3064208-CDS-H-paniculata_contig53989:191..3501622930552.3064208-CDS-H-paniculata_contig53989:191..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53989 192..350 -
1691481344.9519432-CDS-H-paniculata_contig53989:191..3501691481344.9519432-CDS-H-paniculata_contig53989:191..350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53989 192..350 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53989.12826.1prot_H-paniculata_contig53989.12826.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53989 192..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53989.12826.1

>prot_H-paniculata_contig53989.12826.1 ID=prot_H-paniculata_contig53989.12826.1|Name=mRNA_H-paniculata_contig53989.12826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MMGALDSLHRIFGAEGRAVAAARSVGLSALNVTGPVKRRLALHAMGGASG
GA*
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mRNA from alignment at H-paniculata_contig53989:192..350-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53989.12826.1 ID=mRNA_H-paniculata_contig53989.12826.1|Name=mRNA_H-paniculata_contig53989.12826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig53989:192..350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGTGCGCTGGATTCCTTGCATCGAATCTTCGGCGCGGAAGGTCG
AGCTGTGGCGGCTGCCAGAAGCGTGGGGCTGAGCGCACTAAATGTCACGG
GCCCGGTGAAGCGACGCCTAGCGCTACACGCCATGGGTGGGGCTTCGGGG
GGGGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig53989:192..350-

>mRNA_H-paniculata_contig53989.12826.1 ID=mRNA_H-paniculata_contig53989.12826.1|Name=mRNA_H-paniculata_contig53989.12826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig53989:192..350- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGGTGCGCTGGATTCCTTGCATCGAATCTTCGGCGCGGAAGGTCG
AGCTGTGGCGGCTGCCAGAAGCGTGGGGCTGAGCGCACTAAATGTCACGG
GCCCGGTGAAGCGACGCCTAGCGCTACACGCCATGGGTGGGGCTTCGGGG
GGGGCGTGAATGATGGGTGCGCTGGATTCCTTGCATCGAATCTTCGGCGC
GGAAGGTCGAGCTGTGGCGGCTGCCAGAAGCGTGGGGCTGAGCGCACTAA
ATGTCACGGGCCCGGTGAAGCGACGCCTAGCGCTACACGCCATGGGTGGG
GCTTCGGGGGGGGCGTGA
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