mRNA_H-paniculata_contig53756.12802.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A6H5KUT9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT9_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.990e-25 Identity = 55/107 (51.40%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDD 315
MVLAIAAE + E QLD T+FL AD+EE+V+VKMAP +E + N +VM+L LY Q+P NWW TID L E+GF+ LKS+ CV +Y +N ++++ LY+DD
Sbjct: 356 MVLAIAAEMDWEVRQLDVKTSFLYADLEEDVFVKMAPGFEARNANGHKLVMKLGVSLYGLAQSPQNWWKTIDPKLIELGFEPLKSESCVYIYQRNNTVVIITLYVDD 462
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.620e-23 Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
MV AIAAE +L+ QLD T FL ADIEE V+V+MAP YE + + +VM+L K L Q+P +W TID L EIGF LKSD CV +Y +N ++VL LY+DD+L+
Sbjct: 395 MVFAIAAEKDLDVIQLDVKTAFLYADIEENVFVEMAPGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVVLTLYVDDLLI 504
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.720e-15 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVLL 324
++LAIA +LE +D +T +L +D+EE++YVK P YE++ N +V L K LY Q+ NW ID GF S +DPC+ V + S I+V+ LY+DD+++
Sbjct: 53 LILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEILVIVLYVDDLII 163
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A7S1SHQ1_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Eukaryota TaxID=2759 RepID=A0A7S1SHQ1_9CHLO) HSP 1 Score: 75.1 bits (183), Expect = 1.260e-14 Identity = 46/106 (43.40%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 4 VLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDD 315
+LA+AA + E QLD T FL ADIEEE+Y++ + FD N V L K LY Q P NW TI L E GF K DP + V+ + + VL LY+DD
Sbjct: 10 LLALAAYNDWEVEQLDVVTAFLEADIEEEIYMRQPEGFRHFDINGEERVCLLKKSLYGLKQAPRNWNKTITAWLEEYGFTQSKVDPGIYVFIKEGELYVLALYVDD 115
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.090e-14 Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVLL 324
++LAIA +LE +D +T +L +D+EE++YVK P YE+ N +V RL K LY Q+ NW ID GF S +DPC+ V + S ++V+ LY+DD+++
Sbjct: 69 LILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGEMLVIVLYVDDLII 179
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 5.120e-14 Identity = 41/110 (37.27%), Postives = 66/110 (60.00%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVL 321
++LA+A +LE +D +T +L +D+EE++YVK P YE++ N ++ RL K LY Q+ NW ID+ F S +DPC+ V + S I+V+ LY+DD++
Sbjct: 111 LILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSSADPCLYVKFGSSGEILVIVLYVDDLI 220
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.470e-13 Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYN--QTPSNWWWTIDKHLAEIGFKSLKSDPCV*V-YSESNAIIVLPLYIDDVLL 324
+VLA+A +LE +D +L +D+EE+VYVK P YE++ N +V RL K LY Q+ NW ID GF +DPC+ V + S I+V+ LY+DD+++
Sbjct: 69 LVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEILVIVLYVDDLII 179
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A5N6LDN8_9ASTR (Integrase catalytic domain-containing protein n=5 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LDN8_9ASTR) HSP 1 Score: 75.1 bits (183), Expect = 1.610e-13 Identity = 47/115 (40.87%), Postives = 64/115 (55.65%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKM-----APEYEEFDENVVPMVMRLIKGLY--NQTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
+VLAIAA NLE Q+D TTFLN D+EEE+Y++ AP E V +L+K LY NQ P W D+ + GFK + D CV V + ++L LY+DD+L+
Sbjct: 366 LVLAIAALRNLEVHQMDVKTTFLNGDLEEEIYMEQPEGLSAPGQE-------GKVCKLVKSLYGLNQAPKQWHQKFDQVMLNNGFKINECDKCVYVKNTMRGYVILCLYVDDMLI 473
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A2I0IJP3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IJP3_PUNGR) HSP 1 Score: 73.2 bits (178), Expect = 6.500e-13 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query: 1 MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYNQTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
++LAIAA Y+ E WQ+D T FLN IEE++++ +E D++ V + R I GL Q +W D+ + GF + +PCV + + I L LY+DD+LL
Sbjct: 171 IMLAIAAHYDYEVWQMDVKTAFLNVSIEEDIFMDQPKGFESKDKSKVCKLKRSIYGL-TQVSRSWNRRFDEAVKSFGFIKYEDEPCVYKKASGSMIAFLVLYVDDILL 277
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Match: A0A8J4F5P8_9CHLO (Uncharacterized protein n=4 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F5P8_9CHLO) HSP 1 Score: 73.2 bits (178), Expect = 7.810e-13 Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 7 LAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVMRLIKGLYNQTPSNWWWTIDKHLAEIGFKSLKSDPCV*VYSESNAIIVLPLYIDDVLL 324
LA+ A N+E QLD T FLN ++EEEV+VK P +EE NVV + + + GL Q W+ + HL E G++ ++DP + V + + +Y+DDVL+
Sbjct: 991 LAMVAANNMELHQLDVKTAFLNGELEEEVFVKQPPGFEEGGPNVVGRLHKALYGL-RQASRAWYKKLHDHLMEQGYRVSEADPSLYVRERDGVTVYVLVYVDDVLI 1095 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53756.12802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig53756.12802.1 >prot_H-paniculata_contig53756.12802.1 ID=prot_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp MVLAIAAEYNLECWQLDYNTTFLNADIEEEVYVKMAPEYEEFDENVVPMVback to top mRNA from alignment at H-paniculata_contig53756:361..1027+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig53756.12802.1 ID=mRNA_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at H-paniculata_contig53756:361..1027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig53756:361..1027+ >mRNA_H-paniculata_contig53756.12802.1 ID=mRNA_H-paniculata_contig53756.12802.1|Name=mRNA_H-paniculata_contig53756.12802.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig53756:361..1027+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |