prot_H-paniculata_contig5349.12765.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5349.12765.1
Unique Nameprot_H-paniculata_contig5349.12765.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length589
Homology
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: D8LF99_ECTSI (Protein for assembly of pre-ribosomal particles containing 18S rRNA n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF99_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 5.830e-115
Identity = 218/257 (84.82%), Postives = 228/257 (88.72%), Query Frame = 0
Query:  332 DAEESSDAKKVCTKSEENCKIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSPRAKQGIQSFQGTKKSFD 588
            DAEE  DAKK      EN KIYLRGLPWDT DD VKDFFKACGK+V VEQPKNPDGRSSGTAYV FDS AAA KA+E+DGQELGGRWLKIM+SFEKPD  AR GE K KP GCTTVFIGNLSWSIDEDT+R TFGECGDIKSVRFAEDRETGEFRGFGHVEFYDG  VDAAM+LA++DVMGRPIRVDYAAPRAPR+ SFGGGG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  F+ RAKQGIQSFQGTKKSFD
Sbjct:  268 DAEEG-DAKKA---KSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPDGRSSGTAYVTFDSAAAAAKAIELDGQELGGRWLKIMMSFEKPDH-ARNGEPKVKPAGCTTVFIGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMKLANSDVMGRPIRVDYAAPRAPRDDSFGGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--FNARAKQGIQSFQGTKKSFD 517          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A7S2V571_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V571_9STRA)

HSP 1 Score: 240 bits (612), Expect = 7.650e-69
Identity = 111/184 (60.33%), Postives = 142/184 (77.17%), Query Frame = 0
Query:  351 KIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGGGG 534
            K++++GLPW+TE+  +KDFFK  G + +++QP N DGR+SGTAYV+FDS  +A KA+E+DG  +G RW+K++L+ + P     G    EKPEGC TVFIGNLSW IDEDTVR TFG+CGDIKSVRFAEDRETG FRGFG+V+FYDG   D AM+L  +D+MGR +R+DY+APR      FGGGG
Sbjct:  312 KVFMKGLPWETEEYQIKDFFKGIGTIESIDQPLNKDGRASGTAYVVFDSTESAEKALELDGGTVGERWVKLILARDIPPPPKPG----EKPEGCDTVFIGNLSWDIDEDTVRQTFGDCGDIKSVRFAEDRETGRFRGFGYVQFYDGDATDEAMKLNGSDLMGREVRIDYSAPRG-----FGGGG 486          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A835ZAT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAT4_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.700e-68
Identity = 120/211 (56.87%), Postives = 152/211 (72.04%), Query Frame = 0
Query:  333 AEESSDAKKVCTKSEENC------KIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEK---PDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGGGG 534
            A + + AKK   K+EE        KIY+RGLPW   ++ V+DFFK CG++ + + P + +GR+SGTA+V+F    AA K+ E        RWLKI+L+ E+   P  GA   +KK+KPEGCTTVFIGNLSW +DED VR+ FGECG+I SVRFA DRETG+F+GFGHVEF DG  VDAA+ +A T++ GRP+RVDYAAPRAPRE SFGGGG
Sbjct:   78 AADGASAKKA-PKAEEGVSTGAGTKIYVRGLPWSATEEEVRDFFKECGEIESCDLPTDHNGRASGTAFVVFADSDAANKSRE--------RWLKIVLATERAARPSFGAP--DKKDKPEGCTTVFIGNLSWDVDEDAVRAAFGECGEIASVRFATDRETGDFKGFGHVEFVDGEGVDAAIDMAGTEIAGRPVRVDYAAPRAPRE-SFGGGG 276          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A7S2RIH6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIH6_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.310e-59
Identity = 98/173 (56.65%), Postives = 125/173 (72.25%), Query Frame = 0
Query:  351 KIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPR 523
            KI++RGLPW   +D +++ F  CG++  VEQP N DGRSSGTA ++F S ++A  AVEM+G + GGRWL I L+ +KP    R     EKPEGC T+FIGNLSW IDED+VR  F ECG+I +VRFAED+ETG+FRGFGHVEF +      A+ +A TD+MGR +RVDYA  R
Sbjct:  205 KIFIRGLPWRASEDEIREHFGGCGEIKEVEQPMNSDGRSSGTALIVFGSASSAESAVEMNGGDFGGRWLDIKLADDKPIQTERA--PSEKPEGCLTIFIGNLSWQIDEDSVREAFQECGEITTVRFAEDKETGDFRGFGHVEFANTDSTTQAVAMAGTDIMGRAVRVDYAQDR 375          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A7S3Q248_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q248_9STRA)

HSP 1 Score: 212 bits (539), Expect = 9.470e-59
Identity = 93/173 (53.76%), Postives = 125/173 (72.25%), Query Frame = 0
Query:  351 KIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPR 523
            K+Y+RGLPW   DD ++++F +CG++V+ E P   DGRSSGTA + F +  A  K + ++G++ GGRWL I  + +KP   AR  E  EKP  C TVF GNLSW++DEDT+R TF ECG+I S+RFA DRETGEF+GFGH+EF+     DAA+ +A TD+MGR +RVDYAA +
Sbjct:  207 KMYIRGLPWRATDDELREYFASCGEIVSCELPLQSDGRSSGTAEIEFSTKDACEKCMALNGEDFGGRWLSIKYASDKPAFAAR--ETSEKPPDCKTVFCGNLSWNVDEDTLRETFAECGEISSIRFATDRETGEFKGFGHIEFFSSDSTDAAIAMAGTDIMGRAVRVDYAADK 377          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A7S3UY59_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UY59_HETAK)

HSP 1 Score: 212 bits (540), Expect = 4.950e-58
Identity = 102/183 (55.74%), Postives = 129/183 (70.49%), Query Frame = 0
Query:  351 KIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGGG 533
            +I+++GLPW   DD VK+FFK CG +++ + PK+ +GR+SGTAYV F +     KA E+DG   G RWLKI  + E+P     G    E+PEGC TVF GNLSW IDE+++R  F +CGDI SVRFAEDRETG+FRGFG+V FYDGAC D AM+L    V GR IR+DY+APR   + S GGG
Sbjct:  332 RIFVKGLPWAATDDEVKEFFKDCGTILDCDMPKDHNGRASGTAYVSFSTDDERNKAYELDGATFGERWLKIEEARERPAAAKPG----ERPEGCDTVFCGNLSWDIDEESLREFFKDCGDISSVRFAEDRETGKFRGFGYVSFYDGACTDEAMKLTGQVVAGREIRLDYSAPR---DRSGGGG 507          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: W7TQX9_9STRA (RNA binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQX9_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.090e-57
Identity = 105/202 (51.98%), Postives = 136/202 (67.33%), Query Frame = 0
Query:  341 KVCTKSEENCKIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELG--GRWLKIMLSFEKPDGGARGGE-------KKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGGG 533
            K     +E+ K++++GLPW   ++ V+ FF+ CG + +VE P   DGRSSGTAY++F       KAV M+ +  G  GRW+++   +E    G  GG+         EKPEGC +VFIGNLSW+IDE+T+RS F  CG++ SVRFA DRETGEFRGFGHV+F D    +AA+Q+A T VMGR IRVDYA PR PREG FGGG
Sbjct:  266 KGAASPDEDRKVFVQGLPWSATEEEVRAFFQKCGPMTSVELPLK-DGRSSGTAYIVFGEEDGVGKAVAMNEEIFGDSGRWVRVR-KYEPTAAGKDGGKGMGFARPPSEKPEGCMSVFIGNLSWNIDEETIRSAFASCGEVTSVRFATDRETGEFRGFGHVDFADETAPEAAVQMAGTPVMGREIRVDYAQPRPPREGGFGGG 465          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A1Z5KL43_FISSO (Nucleolin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KL43_FISSO)

HSP 1 Score: 206 bits (524), Expect = 7.310e-56
Identity = 94/179 (52.51%), Postives = 124/179 (69.27%), Query Frame = 0
Query:  342 VCTKSEENCKIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYA 520
            V  ++ E  K+Y+RGLPW  E+  V++FF ACG + + E P   DGRSSGTA + F++   A  A+E++G +  GRWL I  S  KP   AR  E  +K +GC TVF+GNL+W +DEDT+R  FGECG+I SVRFA DRETGEF+GFGH+EF D    D A+ +A TD++GR +RVDYA
Sbjct:  267 VSDEATEGNKVYVRGLPWKAEEHEVQEFFAACGPIKSCEMPLMDDGRSSGTAIIEFETNEGAAAAIELNGGDFQGRWLSIKYSTPKPILSAR--EPTQKQDGCVTVFVGNLAWDVDEDTLRQAFGECGEITSVRFATDRETGEFKGFGHIEFTDTEATDKAIAMAGTDILGRQVRVDYA 443          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: K0RJJ6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RJJ6_THAOC)

HSP 1 Score: 206 bits (524), Expect = 1.010e-53
Identity = 104/228 (45.61%), Postives = 135/228 (59.21%), Query Frame = 0
Query:  335 ESSDAKKVCTKSEENCKIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGT----------------------------AYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGGGG 534
            ES ++KK    SE NCK+Y+RGLPW   +D +K++F  CG++ NV+ P   DGRSSGT                            A + F  P+ +  A+  +G + GGRWL I  S  +P   AR   +KE  EGC TVF+GN+S+ IDEDTVR TF +CG+I S+RFAED+ETG F+G+GHVEF +    D A+ LA T VM RPIRVD+A  R  R  S GG G
Sbjct:  561 ESGESKKQALDSESNCKVYVRGLPWRATEDEIKEYFAECGEIKNVDMPLQDDGRSSGTGEFTAREAAVLIAFFFQTKPFAPILSRQAIIEFSDPSGSASALRHNGADFGGRWLNIKYSTSRPITEARAPSQKE--EGCVTVFVGNMSFHIDEDTVRETFKDCGEIASIRFAEDKETGVFKGYGHVEFVESKATDRAVALAGTYVMNRPIRVDFANERKGRSSSGGGXG 786          
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Match: A0A7S1DDH5_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDH5_CYCTE)

HSP 1 Score: 189 bits (479), Expect = 3.340e-53
Identity = 94/179 (52.51%), Postives = 122/179 (68.16%), Query Frame = 0
Query:  358 PWDTEDDAVKDFF-KACGKV---VNVEQPKNPDGRSSGTAYVLFDSPAAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIGNLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVDAAMQLASTDVMGRPIRVDYAAPRAPREGSFGG 532
            PW   ++ V+++F  +CG V   +  E P   DGRSSGTA + F S  AA KAVE++G++  GRWL I  S  KP    R  E  +K +GC TVF+GNLSW+IDEDT++  FGECG+IK VRFA D+ET +F+G+GH+EFY+    D AM+LA TD+MGRP+RVDYA  R     SFGG
Sbjct:    1 PWRASEEEVREYFASSCGGVECILTCELPLMNDGRSSGTAIIEFASVEAAAKAVELNGEDFQGRWLNIKYSTPKPIMAPR--EPTQKQDGCVTVFVGNLSWNIDEDTLKEVFGECGEIKMVRFATDKETEDFKGYGHIEFYETEATDKAMELAGTDIMGRPVRVDYANDRRK---SFGG 174          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5349.12765.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF99_ECTSI5.830e-11584.82Protein for assembly of pre-ribosomal particles co... [more]
A0A7S2V571_9STRA7.650e-6960.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A835ZAT4_9STRA1.700e-6856.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RIH6_9STRA1.310e-5956.65Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3Q248_9STRA9.470e-5953.76Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3UY59_HETAK4.950e-5855.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TQX9_9STRA1.090e-5751.98RNA binding protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A1Z5KL43_FISSO7.310e-5652.51Nucleolin n=2 Tax=Fistulifera solaris TaxID=151956... [more]
K0RJJ6_THAOC1.010e-5345.61Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1DDH5_CYCTE3.340e-5352.51Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 351..422
e-value: 4.8E-20
score: 82.6
coord: 446..518
e-value: 7.2E-23
score: 92.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 352..419
e-value: 1.7E-15
score: 56.6
coord: 447..516
e-value: 3.5E-14
score: 52.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 350..426
score: 15.681
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 445..522
score: 16.62
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 431..541
e-value: 1.9E-26
score: 94.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 291..423
e-value: 4.1E-24
score: 87.1
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 270..521
NoneNo IPR availablePANTHERPTHR23003:SF34NUCLEOLINcoord: 270..521
coord: 438..524
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 438..524
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 345..433
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 439..554

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5349contigH-paniculata_contig5349:2066..12563 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5349.12765.1mRNA_H-paniculata_contig5349.12765.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5349 2066..12700 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5349.12765.1 ID=prot_H-paniculata_contig5349.12765.1|Name=mRNA_H-paniculata_contig5349.12765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=589bp
MGKDKVSKKSSDGKKAKKSAPVVTKNPPPPAKVAKAAKAAKSSGKKKEKA
AKVTSSGKKSKKVKAAPPPPPPSSSSEESSSEEEEEEKPKVAPSNGKAKD
EDSSSEDESSEEEEKPKAKTAAVKKAESSDEDSSDDDDDSSEEEEAKKPA
KVAAAPSKKSKAAAKEESSDDSDDDSDDSDDESEEATAPKAKGNGAAKSS
KAKAAPKAMANGSKEESSSEEDSEDDSDEDDESEEESDDDEPEKPKSTVK
TPAAAAKSSVKEDDDDDSSDEDSSDDDDDEEEEEKPKAKAASKAKADDDD
DDDDDDDDSSDEESEEEEKEEKKPSKKRKAGDAEESSDAKKVCTKSEENC
KIYLRGLPWDTEDDAVKDFFKACGKVVNVEQPKNPDGRSSGTAYVLFDSP
AAATKAVEMDGQELGGRWLKIMLSFEKPDGGARGGEKKEKPEGCTTVFIG
NLSWSIDEDTVRSTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGACVD
AAMQLASTDVMGRPIRVDYAAPRAPREGSFGGGGGGGRGGGRGGGRGGGG
GRGGGGRGGGRGGGRGGGFSPRAKQGIQSFQGTKKSFD*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf