mRNA_H-paniculata_contig5338.12749.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5338.12749.1
Unique NamemRNA_H-paniculata_contig5338.12749.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5338.12749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5338contigH-paniculata_contig5338:4120..4767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size648
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5338.12749.1prot_H-paniculata_contig5338.12749.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5338 4224..4619 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930542.375724-UTR-H-paniculata_contig5338:4119..42231622930542.375724-UTR-H-paniculata_contig5338:4119..4223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5338 4120..4223 +
1691481340.5444713-UTR-H-paniculata_contig5338:4119..42231691481340.5444713-UTR-H-paniculata_contig5338:4119..4223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5338 4120..4223 +
1622930542.4065166-UTR-H-paniculata_contig5338:4619..47671622930542.4065166-UTR-H-paniculata_contig5338:4619..4767Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5338 4620..4767 +
1691481340.56755-UTR-H-paniculata_contig5338:4619..47671691481340.56755-UTR-H-paniculata_contig5338:4619..4767Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5338 4620..4767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930542.3948553-CDS-H-paniculata_contig5338:4223..46191622930542.3948553-CDS-H-paniculata_contig5338:4223..4619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 4224..4619 +
1691481340.5567675-CDS-H-paniculata_contig5338:4223..46191691481340.5567675-CDS-H-paniculata_contig5338:4223..4619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5338 4224..4619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5338.12749.1

>prot_H-paniculata_contig5338.12749.1 ID=prot_H-paniculata_contig5338.12749.1|Name=mRNA_H-paniculata_contig5338.12749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MLYVGCWLLIVGMGRLLFLRRLMARINGGQRQAFQCDYGGSNGAHLFLHS
AGIKPATAGIQYTEIINFAGLVKGPRGLYGTGRHACPVGFLEDGVPSHCP
GTENYGPVEVPSCPVLTGQSAPSSTVQPVPL*
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mRNA from alignment at H-paniculata_contig5338:4120..4767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5338.12749.1 ID=mRNA_H-paniculata_contig5338.12749.1|Name=mRNA_H-paniculata_contig5338.12749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig5338:4120..4767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATACATAGATACCGTACCCAAACCCAATCCCAATCAAACAATCCATCCG
CCCGCATACACAGTATATGCAAGACTTTTGGAAATAGAAAGTGAGTGATG
GTGTATGTTGTATGTTGGCTGTTGGCTGTTGATTGTTGGTATGGGGAGGT
TACTTTTTCTTCGTCGGTTGATGGCGAGGATAAATGGAGGACAACGACAG
GCTTTTCAATGCGATTACGGAGGATCCAACGGTGCGCATCTTTTTTTGCA
TTCAGCGGGAATCAAACCCGCGACTGCTGGAATTCAATACACCGAAATAA
TTAATTTCGCAGGGCTTGTCAAGGGACCACGGGGCCTTTACGGGACGGGA
CGGCACGCTTGTCCCGTCGGTTTTCTGGAGGACGGGGTCCCGTCCCATTG
TCCCGGAACCGAGAATTATGGTCCGGTCGAAGTCCCGTCTTGTCCAGTCC
TTACGGGACAGAGTGCCCCATCCTCAACCGTACAGCCTGTCCCGTTGTGA
CCGTGCGACGTCAATGAGAGGAAGATTGTTCTAAGTGTTCCGTGGGAAAT
TCATGGTACAACATATCGGGGTTTTGGCGTATGCTCAGGTGATGTCTACT
GCGGAAGTAAGTTGGGCGTTGTCATCTGTCGATCACACGCTGGCGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5338:4120..4767+

>mRNA_H-paniculata_contig5338.12749.1 ID=mRNA_H-paniculata_contig5338.12749.1|Name=mRNA_H-paniculata_contig5338.12749.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig5338:4120..4767+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTATGTTGGCTGTTGGCTGTTGATTGTTGGTATGGGGAGGTTACT
TTTTCTTCGTCGGTTGATGGCGAGGATAAATGGAGGACAACGACAGGCTT
TTCAATGCGATTACGGAGGATCCAACGGTGCGCATCTTTTTTTGCATTCA
GCGGGAATCAAACCCGCGACTGCTGGAATTCAATACACCGAAATAATTAA
TTTCGCAGGGCTTGTCAAGGGACCACGGGGCCTTTACGGGACGGGACGGC
ACGCTTGTCCCGTCGGTTTTCTGGAGGACGGGGTCCCGTCCCATTGTCCC
GGAACCGAGAATTATGGTCCGGTCGAAGTCCCGTCTTGTCCAGTCCTTAC
GGGACAGAGTGCCCCATCCTCAACCGTACAGCCTGTCCCGTTGTGAATGT
TGTATGTTGGCTGTTGGCTGTTGATTGTTGGTATGGGGAGGTTACTTTTT
CTTCGTCGGTTGATGGCGAGGATAAATGGAGGACAACGACAGGCTTTTCA
ATGCGATTACGGAGGATCCAACGGTGCGCATCTTTTTTTGCATTCAGCGG
GAATCAAACCCGCGACTGCTGGAATTCAATACACCGAAATAATTAATTTC
GCAGGGCTTGTCAAGGGACCACGGGGCCTTTACGGGACGGGACGGCACGC
TTGTCCCGTCGGTTTTCTGGAGGACGGGGTCCCGTCCCATTGTCCCGGAA
CCGAGAATTATGGTCCGGTCGAAGTCCCGTCTTGTCCAGTCCTTACGGGA
CAGAGTGCCCCATCCTCAACCGTACAGCCTGTCCCGTTGTGA
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