mRNA_H-paniculata_contig53050.12706.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53050.12706.1
Unique NamemRNA_H-paniculata_contig53050.12706.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: M5BUS0_THACB (Rhizoctonia solani AG1-IB WGS project CAOJ00000000 data, isolate 7/3/14, contig 10759 n=1 Tax=Thanatephorus cucumeris (strain AG1-IB / isolate 7/3/14) TaxID=1108050 RepID=M5BUS0_THACB)

HSP 1 Score: 63.9 bits (154), Expect = 1.650e-9
Identity = 35/101 (34.65%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFD-CETCSNLFVTVANGETLPIEEYGKMLVWTKDR-GEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPN 297
            W+ DSGA+ HMTP+ +     C   S + V + NG+ +P    G++ V  ++R G+  +  +  V HVP L  NL S+Q +VN G  V  ++   AI   N
Sbjct:  327 WLLDSGASRHMTPNRQWFATYCPLASPVSVRIGNGKQIPAAGIGRIFVTLRNRQGKDTEAVIKEVLHVPDLQANLISVQELVNGGTNVVFQKGSGAILTAN 427          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A8H8P649_9AGAM (Copia-like polyprotein/retrotransposon n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8P649_9AGAM)

HSP 1 Score: 62.8 bits (151), Expect = 4.090e-9
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFD-CETCSNLFVTVANGETLPIEEYGKMLVWTKDR-GEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPN 297
            W+ DSGA+ HMTP+       C     + V V N + +P    G++ +  ++R G  HK  +  V HVP L  NL S+Q +VN G  V   +D  A+ + N
Sbjct:  329 WLLDSGASKHMTPNQHWFATYCPLTLPVHVQVGNRKQIPAAGIGRVFIVMQNRQGTEHKAVIKEVLHVPKLQANLMSVQELVNNGTEVAFGKDYGAVLVAN 429          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.900e-8
Identity = 34/102 (33.33%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRG-EIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGS 303
            W+ DSGA+AHMT         E     ++T+A+G+   I   G  ++   D   E+ +  +S V +VPGL TNL S++ +  + L V    DG  I  P G+
Sbjct:  275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A2N9G1Z9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G1Z9_FAGSY)

HSP 1 Score: 54.3 bits (129), Expect = 4.040e-6
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFDCETCS-NLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 228
            W++D+GA  H TP    + DC   + N FVTV NG++LPI   G   +        H F L +V HVP + ++L S+
Sbjct:  408 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITHSGNSQLHASS----HLFHLRKVLHVPSMSSSLLSV 480          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A2N9EUP4_FAGSY (Integrase catalytic domain-containing protein n=5 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUP4_FAGSY)

HSP 1 Score: 54.3 bits (129), Expect = 4.150e-6
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFDCETCS-NLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 228
            W++D+GA  H TP    + DC   + N FVTV NG++LPI   G   +        H F L +V HVP + ++L S+
Sbjct:  366 WISDTGATDHFTPDITHIPDCHAYTGNDFVTVGNGQSLPITHSGNSQLHASS----HLFHLRKVLHVPSMSSSLLSV 438          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: UPI001A3D4AD4 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A3D4AD4)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-5
Identity = 31/107 (28.97%), Postives = 51/107 (47.66%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGSDLLCRK 321
            W+ DSGA  HM  ++E M    TC +  +  A  E L ++  G   +W  D        L  V ++P L++NL S+Q ++  G  V   E G  I   +G+ +  ++
Sbjct:  337 WIVDSGATHHMV-NDERMLLTSTCKDGQICTAGNERLQVKAIGDASLWVGDV----TIQLLDVLYMPKLNSNLLSVQGLIENGARVTFDEFGTIIKQNDGTQIQYKR 438          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: UPI000B78030F (uncharacterized protein LOC110715866 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78030F)

HSP 1 Score: 51.2 bits (121), Expect = 4.490e-5
Identity = 31/113 (27.43%), Postives = 53/113 (46.90%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGSDLLCRKIGNMTF 339
            W+ DSG   HMT   ++  + +    + + + NG  +  E  G + V TK      K     V +VPGL+ NL S+  +V  G ++  K++  AI  P  + +   K+ +  F
Sbjct:  322 WLIDSGCTNHMTKQFDIFTNIDKYVKIPIRMGNGSMVKSEGKGTVAVQTKQGTRFIK----DVLYVPGLNQNLLSVPQMVQNGYSIHFKDESCAILDPQKNKIANVKMQHKRF 430          
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Match: A0A2I0WQU9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WQU9_9ASPA)

HSP 1 Score: 50.4 bits (119), Expect = 8.590e-5
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query:    1 WVADSGAAAHMTPSNELMFDCETCSNL-FVTVANGETLPIEEYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQNVV-NQGLTVCLKEDGAAI 285
            W+ DSGA  H+T  N  +      +    VTVANG +LPI  YG+ L+   D     K  L R+ HVP L  NL S+  +  +  + +    +G  I
Sbjct:  322 WILDSGATNHITHDNASLHQSAPYTGSDSVTVANGSSLPIHNYGQGLLPLPDTPR--KLHLLRLLHVPHLTHNLLSVSKLTKDNNIAITFDSNGFTI 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53050.12706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
M5BUS0_THACB1.650e-934.65Rhizoctonia solani AG1-IB WGS project CAOJ00000000... [more]
A0A8H8P649_9AGAM4.090e-934.65Copia-like polyprotein/retrotransposon n=2 Tax=Rhi... [more]
Q967L5_AEDAE3.900e-833.33Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A2N9G1Z9_FAGSY4.040e-637.66Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EUP4_FAGSY4.150e-637.66Integrase catalytic domain-containing protein n=5 ... [more]
UPI001A3D4AD41.430e-528.97uncharacterized protein n=1 Tax=Ustilago hordei Ta... [more]
UPI000B78030F4.490e-527.43uncharacterized protein LOC110715866 n=1 Tax=Cheno... [more]
A0A2I0WQU9_9ASPA8.590e-534.02Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53050contigH-paniculata_contig53050:751..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size315
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.9564555-UTR-H-paniculata_contig53050:750..7801622930536.9564555-UTR-H-paniculata_contig53050:750..780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53050 751..780 +
1691481338.1444564-UTR-H-paniculata_contig53050:750..7801691481338.1444564-UTR-H-paniculata_contig53050:750..780Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53050 751..780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.9750977-CDS-H-paniculata_contig53050:780..10951622930536.9750977-CDS-H-paniculata_contig53050:780..1095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53050 781..1095 +
1691481338.1528103-CDS-H-paniculata_contig53050:780..10951691481338.1528103-CDS-H-paniculata_contig53050:780..1095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53050 781..1095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53050.12706.1prot_H-paniculata_contig53050.12706.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53050 781..1095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53050.12706.1

>prot_H-paniculata_contig53050.12706.1 ID=prot_H-paniculata_contig53050.12706.1|Name=mRNA_H-paniculata_contig53050.12706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MTPSNELMFDCETCSNLFVTVANGETLPIEEYGKMLVWTKDRGEIHKFSL
SRVAHVPGLDTNLFSLQNVVNQGLTVCLKEDGAAIALPNGSDLLCRKIGN
MTFW*
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mRNA from alignment at H-paniculata_contig53050:751..1095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53050.12706.1 ID=mRNA_H-paniculata_contig53050.12706.1|Name=mRNA_H-paniculata_contig53050.12706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig53050:751..1095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGTGGCCGATAGTGGGGCTGCGGCCCACATGACTCCGTCTAACGAATT AATGTTTGATTGCGAAACCTGCAGCAATTTGTTTGTGACGGTGGCTAACG GCGAAACACTTCCGATTGAGGAATATGGTAAGATGTTGGTATGGACGAAG GATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCC GGGCCTGGACACAAATTTGTTTTCCCTACAGAATGTAGTGAACCAGGGAC TTACTGTCTGTTTGAAGGAGGACGGTGCAGCAATTGCACTACCTAATGGG AGCGATCTTTTGTGCAGAAAAATCGGAAACATGACTTTTTGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig53050:751..1095+

>mRNA_H-paniculata_contig53050.12706.1 ID=mRNA_H-paniculata_contig53050.12706.1|Name=mRNA_H-paniculata_contig53050.12706.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig53050:751..1095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCCGTCTAACGAATTAATGTTTGATTGCGAAACCTGCAGCAATTT
GTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGAATATGGTA
AGATGTTGGTATGGACGAAGGATCGGGGCGAGATACACAAATTCAGCTTG
AGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACA
GAATGTAGTGAACCAGGGACTTACTGTCTGTTTGAAGGAGGACGGTGCAG
CAATTGCACTACCTAATGGGAGCGATCTTTTGTGCAGAAAAATCGGAAAC
ATGACTTTTTGGTAGATGACTCCGTCTAACGAATTAATGTTTGATTGCGA
AACCTGCAGCAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGA
TTGAGGAATATGGTAAGATGTTGGTATGGACGAAGGATCGGGGCGAGATA
CACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAA
TTTGTTTTCCCTACAGAATGTAGTGAACCAGGGACTTACTGTCTGTTTGA
AGGAGGACGGTGCAGCAATTGCACTACCTAATGGGAGCGATCTTTTGTGC
AGAAAAATCGGAAACATGACTTTTTGGTAG
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