mRNA_H-paniculata_contig5297.12684.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5297.12684.1
Unique NamemRNA_H-paniculata_contig5297.12684.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5297.12684.1 vs. uniprot
Match: A0A6H5LKZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKZ1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.160e-14
Identity = 48/79 (60.76%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   16 QALAETNALLARALALHFAVDTSASWGSGGG--LRRACCELAFQDVADVRTMVGSTSSPPALLGVPGVGGEGNGEEQQS 246
             AL ETNALLA ALALHFA D S       G  +R ACC LAFQDVADVR M+  T +PPALLGV  VG E  G+ Q S
Sbjct:  389 NALTETNALLAGALALHFAGDASGGGRGXXGEAVRAACCALAFQDVADVRAMLCGTGAPPALLGVLRVGDESPGKSQPS 467
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5297.12684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LKZ1_9PHAE1.160e-1460.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5297contigH-paniculata_contig5297:1417..2301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size340
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.868013-CDS-H-paniculata_contig5297:1416..15751622930533.868013-CDS-H-paniculata_contig5297:1416..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 1417..1575 +
1691481336.6782064-CDS-H-paniculata_contig5297:1416..15751691481336.6782064-CDS-H-paniculata_contig5297:1416..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 1417..1575 +
1622930533.8980997-CDS-H-paniculata_contig5297:2121..23011622930533.8980997-CDS-H-paniculata_contig5297:2121..2301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 2122..2301 +
1691481336.6881442-CDS-H-paniculata_contig5297:2121..23011691481336.6881442-CDS-H-paniculata_contig5297:2121..2301Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5297 2122..2301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5297.12684.1prot_H-paniculata_contig5297.12684.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5297 1417..2301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5297.12684.1

>prot_H-paniculata_contig5297.12684.1 ID=prot_H-paniculata_contig5297.12684.1|Name=mRNA_H-paniculata_contig5297.12684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MIFFFQALAETNALLARALALHFAVDTSASWGSGGGLRRACCELAFQDVA
DVRTMVGSTSSPPALLGVPGVGGEGNGEEQQSEPSSDVSSTSEDKRPIND
SRKTFGPFAEPEQ
back to top

mRNA from alignment at H-paniculata_contig5297:1417..2301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5297.12684.1 ID=mRNA_H-paniculata_contig5297.12684.1|Name=mRNA_H-paniculata_contig5297.12684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=885bp|location=Sequence derived from alignment at H-paniculata_contig5297:1417..2301+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTTTTTTTTCAGGCTTTGGCGGAGACAAACGCGTTGCTGGCCAG
AGCGCTCGCCCTCCACTTTGCCGTGGACACCTCCGCATCCTGGGGTAGCG
GTGGCGGACTTCGTCGTGCTTGCTGCGAGTTGGCCTTCCAGGATGTGGCT
GACGTGCGGGTGAGGGGAATCGCCTTGTGCCAGTCGTCAATATTCGCTTC
TCGGCCGCTGACTCCGCAGCAGCAGCAGCAGTAGGCGCTGCCCTTGACGC
CTTGACCGCCATCTGTTTCTGTTTTAGAGCCCATGTTTTAATTAAAGTGT
ACCCCTTAGTCCTTCTACGAGTTGCTTGAGAAAACTGTCGTATGGCAAAG
AAGGCAAGCATTTTTTGTTGGTTTGTGTTGCGAGAGAAGAGATGCGATCA
TAACAGGTCCTATTGCGGTGGAACTTTGAAATGACAAGTTCACACACCGA
TGGCTATCCTCTCCTTTGATGTCATATAAGGGCGTGTTGTGGCCCCTAGT
TAGAGACGGCTTTGCTTTCGTGATTCCTGCCACATGTAGTAGTATTTTTC
TGCGAGTACGCGGAGTACTACTTGTGCTGCGAGATATCACGTGCGAGTAC
TCAGCTCTGGCGTTGAAATCTTGAATATCTTCCAACAAAAAAATGCCGTT
TGCTCCCCCCTCACACATGTGCCCGTTCACCCTGCCCTTCTGTATTTTTA
CCCAGACGATGGTAGGTAGCACGAGCAGCCCACCGGCTCTTCTCGGCGTC
CCGGGTGTCGGTGGAGAGGGAAATGGAGAGGAGCAACAATCTGAACCGTC
GTCGGATGTTTCATCAACGTCTGAAGACAAGCGGCCGATCAACGACTCTC
GGAAGACATTCGGACCCTTCGCCGAGCCCGAGCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5297:1417..2301+

>mRNA_H-paniculata_contig5297.12684.1 ID=mRNA_H-paniculata_contig5297.12684.1|Name=mRNA_H-paniculata_contig5297.12684.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig5297:1417..2301+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTTTTTTTTTCAGGCTTTGGCGGAGACAAACGCGTTGCTGGCCAG
AGCGCTCGCCCTCCACTTTGCCGTGGACACCTCCGCATCCTGGGGTAGCG
GTGGCGGACTTCGTCGTGCTTGCTGCGAGTTGGCCTTCCAGGATGTGGCT
GACGTGCGGATGATTTTTTTTTTTCAGGCTTTGGCGGAGACAAACGCGTT
GCTGGCCAGAGCGCTCGCCCTCCACTTTGCCGTGGACACCTCCGCATCCT
GGGGTAGCGGTGGCGGACTTCGTCGTGCTTGCTGCGAGTTGGCCTTCCAG
GATGTGGCTGACGTGCGGACGATGGTAGGTAGCACGAGCAGCCCACCGGC
TCTTCTCGGCGTCCCGGGTGTCGGTGGAGAGGGAAATGGAGAGGAGCAAC
AATCTGAACCGTCGTCGGATGTTTCATCAACGTCTGAAGACAAGCGGCCG
ATCAACGACTCTCGGAAGACATTCGGACCCTTCGCCGAGCCCGAGCAGAC
GATGGTAGGTAGCACGAGCAGCCCACCGGCTCTTCTCGGCGTCCCGGGTG
TCGGTGGAGAGGGAAATGGAGAGGAGCAACAATCTGAACCGTCGTCGGAT
GTTTCATCAACGTCTGAAGACAAGCGGCCGATCAACGACTCTCGGAAGAC
ATTCGGACCCTTCGCCGAGCCCGAGCAG
back to top