mRNA_H-paniculata_contig52945.12681.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52945.12681.1
Unique NamemRNA_H-paniculata_contig52945.12681.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8C122_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C122_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.680e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct:  326 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 387
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BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8C1Z7_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1Z7_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.740e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct:  616 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 677
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BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8BZM0_9ASCO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BZM0_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.740e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct:  929 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 990
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8C4M5_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C4M5_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.780e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct: 1521 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 1582
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8C1N6_9ASCO (Integrase catalytic domain-containing protein n=3 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C1N6_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.780e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct: 1909 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 1970
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8BE48_9ASCO (Integrase catalytic domain-containing protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BE48_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.790e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct: 1107 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 1168
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8C8U5_9ASCO (Uncharacterized protein n=2 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C8U5_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.790e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct: 2401 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 2462
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A5E8C189_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C189_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 9.810e-12
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTLYTVFS 186
            LPAGRKA+ TKW+LK+KL  DG +  YK +L  QGF    G D+V+T AP+ R ST+  +F+
Sbjct: 3494 LPAGRKALGTKWVLKKKLNTDGSIDKYKARLVVQGFRQKFGVDYVDTFAPVMRFSTVRLIFA 3555
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A177U0C1_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0C1_9BASI)

HSP 1 Score: 67.4 bits (163), Expect = 1.330e-11
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTL 171
            LP  RKA+ ++W+ K KL EDG+ A  K +L AQGFS VEG DF ET AP+AR+ TL
Sbjct:  749 LPPNRKAVGSRWVYKLKLDEDGKAARRKARLVAQGFSQVEGIDFTETFAPVARLDTL 805
[Close]
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Match: A0A6L2LFG9_TANCI (Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LFG9_TANCI)

HSP 1 Score: 66.6 bits (161), Expect = 2.010e-11
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAPLARMSTL 171
            LP G KA+  KWILKRK+K DG +  YK +L  QGF   EG DFV+T AP+AR+ST+
Sbjct:   31 LPPGCKALGCKWILKRKMKVDGSIDKYKARLVIQGFRQKEGIDFVDTYAPVARISTI 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52945.12681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E8C122_9ASCO9.680e-1251.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C1Z7_9ASCO9.740e-1251.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8BZM0_9ASCO9.740e-1251.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5E8C4M5_9ASCO9.780e-1251.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C1N6_9ASCO9.780e-1251.61Integrase catalytic domain-containing protein n=3 ... [more]
A0A5E8BE48_9ASCO9.790e-1251.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E8C8U5_9ASCO9.790e-1251.61Uncharacterized protein n=2 Tax=Saprochaete ingens... [more]
A0A5E8C189_9ASCO9.810e-1251.61Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A177U0C1_9BASI1.330e-1157.89Integrase catalytic domain-containing protein n=2 ... [more]
A0A6L2LFG9_TANCI2.010e-1157.89Zinc finger, CCHC-type n=1 Tax=Tanacetum cinerarii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52945contigH-paniculata_contig52945:1019..1204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue5.1e-08
Seed eggNOG ortholog4538.ORGLA10G0160900.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930533.693623-CDS-H-paniculata_contig52945:1018..12041622930533.693623-CDS-H-paniculata_contig52945:1018..1204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52945 1019..1204 +
1691481336.6238992-CDS-H-paniculata_contig52945:1018..12041691481336.6238992-CDS-H-paniculata_contig52945:1018..1204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52945 1019..1204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52945.12681.1prot_H-paniculata_contig52945.12681.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52945 1019..1204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52945.12681.1

>prot_H-paniculata_contig52945.12681.1 ID=prot_H-paniculata_contig52945.12681.1|Name=mRNA_H-paniculata_contig52945.12681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
LPAGRKAICTKWILKRKLKEDGRVACYKTQLEAQGFSHVEGEDFVETRAP
LARMSTLYTVFS
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mRNA from alignment at H-paniculata_contig52945:1019..1204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52945.12681.1 ID=mRNA_H-paniculata_contig52945.12681.1|Name=mRNA_H-paniculata_contig52945.12681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig52945:1019..1204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCGGCAGGGCGGAAGGCAATCTGTACCAAATGGATTTTGAAGCGCAA
ACTCAAGGAGGACGGCAGGGTGGCATGCTACAAAACGCAACTAGAGGCTC
AAGGTTTTTCACACGTGGAGGGTGAAGATTTCGTTGAAACCAGGGCCCCC
TTAGCTCGCATGTCGACATTGTATACTGTTTTTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig52945:1019..1204+

>mRNA_H-paniculata_contig52945.12681.1 ID=mRNA_H-paniculata_contig52945.12681.1|Name=mRNA_H-paniculata_contig52945.12681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig52945:1019..1204+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCGGCAGGGCGGAAGGCAATCTGTACCAAATGGATTTTGAAGCGCAA
ACTCAAGGAGGACGGCAGGGTGGCATGCTACAAAACGCAACTAGAGGCTC
AAGGTTTTTCACACGTGGAGGGTGAAGATTTCGTTGAAACCAGGGCCCCC
TTAGCTCGCATGTCGACATTGTATACTGTTTTTAGCTTACCGGCAGGGCG
GAAGGCAATCTGTACCAAATGGATTTTGAAGCGCAAACTCAAGGAGGACG
GCAGGGTGGCATGCTACAAAACGCAACTAGAGGCTCAAGGTTTTTCACAC
GTGGAGGGTGAAGATTTCGTTGAAACCAGGGCCCCCTTAGCTCGCATGTC
GACATTGTATACTGTTTTTAGC
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