mRNA_H-paniculata_contig11999.1266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: A0A6H5KLW3_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLW3_9PHAE) HSP 1 Score: 249 bits (636), Expect = 8.510e-73 Identity = 107/130 (82.31%), Postives = 122/130 (93.85%), Query Frame = 2
Query: 2 NGRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLCGSRLLRPGIGC 391
NGRVMKNP HRW+D+KYV HTLG LDCFP YMQGAFYIL++PLVEHLYRG +HLECFTNEDVT+GSWL+GVDRE+VEMY+L +SHLWDCLCAR QIT KTR++QMFFHNCKG+SQLKLCG+RLLRPG+GC
Sbjct: 172 NGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLHTSHLWDCLCARTQITVKTRRKQMFFHNCKGLSQLKLCGTRLLRPGVGC 301
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: D8LT07_ECTSI (Beta-1,3-n-acetylglucosaminyltransferase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT07_ECTSI) HSP 1 Score: 250 bits (639), Expect = 2.260e-69 Identity = 108/130 (83.08%), Postives = 122/130 (93.85%), Query Frame = 2
Query: 2 NGRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLCGSRLLRPGIGC 391
NGRVMKNP HRW+D+KYV HTLG LDCFP YMQGAFYIL++PLVEHLYRG +HLECFTNEDVT+GSWL+GVDRE+VEMY+LR+SHLWDCLCAR QIT KTRK+ MFFHNCKG+SQLKLCG+RLLRPG+GC
Sbjct: 508 NGRVMKNPDHRWFDSKYVQHTLGGLDCFPAYMQGAFYILAQPLVEHLYRGHEHLECFTNEDVTIGSWLMGVDREMVEMYNLRTSHLWDCLCARTQITVKTRKKHMFFHNCKGLSQLKLCGTRLLRPGVGC 637
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: A0A835YNB7_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNB7_9STRA) HSP 1 Score: 148 bits (373), Expect = 7.500e-37 Identity = 65/122 (53.28%), Postives = 87/122 (71.31%), Query Frame = 2
Query: 5 GRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLCGSRL 370
GRV+K+P H+W+D K+V HTLG LDC+P Y QGAFY+LS+PLV++L++GR L FTNEDVT+GSWL+GVDRE++ + + LW+C CA+ K FFHNCK + QL+ C L
Sbjct: 99 GRVIKDPNHKWHDAKFVSHTLGGLDCYPAYHQGAFYLLSEPLVQYLHQGRSKLLTFTNEDVTMGSWLMGVDREMIAFNSISEARLWECTCAKYTKWLKY-DTNAFFHNCKSLDQLQKCAEFL 219
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: A0A835YWI3_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI3_9STRA) HSP 1 Score: 146 bits (369), Expect = 1.450e-34 Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 2
Query: 5 GRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITS-----KTRKRQMFFHNCKGMSQLKLC 358
GRV +PTH+WYD +YV HT+GS++C+P Y QGA YILS+ LVE LY+GRDHL F NEDVT+G+WL+GVDR +V + DL + LW+C CA + K + FFHNCK Q+ C
Sbjct: 257 GRVFSDPTHKWYDERYVEHTMGSMECYPPYHQGAGYILSRSLVEFLYKGRDHLLTFINEDVTMGTWLMGVDRSVVSLRDLDGARLWECTCASYRFAHDAAFHKNHQNNAFFHNCKQAWQMLKC 379
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: A0A835YTA1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTA1_9STRA) HSP 1 Score: 149 bits (377), Expect = 2.600e-34 Identity = 66/121 (54.55%), Postives = 87/121 (71.90%), Query Frame = 2
Query: 5 GRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLCGSR 367
GRV+ + T+RWYD K+V HT+G L C+PVYMQGAFY+L++PLVE L GR H F NEDVTVGSWLLGVDR+IV + D+ ++ LW C C+ + RK +FFH+CK + +L+ C R
Sbjct: 448 GRVIMDKTNRWYDPKFVTHTMGGLPCYPVYMQGAFYVLAQPLVEFLNLGRPHWVTFQNEDVTVGSWLLGVDRDIVTIDDITTARLWGCQCSLDTMPQWARKSSVFFHDCKALEKLRRCDER 568
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: D7G6P0_ECTSI (Hexosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P0_ECTSI) HSP 1 Score: 139 bits (351), Expect = 1.360e-31 Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 2
Query: 5 GRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLC 274
GRV+K+ +WYD K+V HTL LDC+PVYMQGAFY+L++PLVEHLYRGR+H + F NEDVTVGSWLLGVDR + ++D SS LW+C+C
Sbjct: 332 GRVIKDHKDKWYDQKFVHHTLAGLDCYPVYMQGAFYVLAQPLVEHLYRGREHYDTFINEDVTVGSWLLGVDRALGTIHDFESSRLWNCVC 421
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: A0A6H5JHW0_9PHAE (Hexosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW0_9PHAE) HSP 1 Score: 130 bits (327), Expect = 7.980e-29 Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query: 5 GRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLC 358
G+V+ + +WYD KY+ HT+ LDC+PVYMQGAFYILS PLVE L +G L F NEDVT+G WL GVDR I + DLR + +W+C C R + +FFHNCK M L+ C
Sbjct: 291 GKVIVDMDDKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARVWECSCKRPNF-NPGGDANVFFHNCKSMDDLRGC 407
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: D7FQB9_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB9_ECTSI) HSP 1 Score: 131 bits (329), Expect = 8.160e-29 Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query: 5 GRVMKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLC 358
G+V+ + +WYD KY+ HT+ LDC+PVYMQGAFYILS PLVE L +G L F NEDVT+G WL GVDR I + DLR + +W+C C R + +FFH CKGM L+ C
Sbjct: 331 GKVIVDMDEKWYDGKYLNHTMNGLDCYPVYMQGAFYILSYPLVEFLNQGSSKLLTFDNEDVTIGLWLHGVDRAIFPLNDLRDARMWECSCKRPNF-NPGGDANVFFHGCKGMDDLRGC 447
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: A0A835Z4X8_9STRA (Hexosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X8_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.650e-27 Identity = 65/176 (36.93%), Postives = 91/176 (51.70%), Query Frame = 2
Query: 2 NGRVMKNPTHRWYDTKYVPHTLGSLDCFPVYM----------------------------------------------------QGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTR-KRQMFFHNCKGMSQLKLCGSRL 370
+GR++++PTH+W+D K+V HTLG LDC+P Y QGAFY+LS+PLV HL+RGR L F NEDVTVG+W++ ++RE+V + L ++HLWDC CA T R +F HNCK ++QL+ C + L
Sbjct: 172 SGRIIRDPTHKWHDAKFVAHTLGGLDCYPAYXXXXXXXXXXXXXXXXXXXXXRQRGLRGGACGQSLLELKLAVHNSLDKYPAYHQGAFYLLSQPLVAHLHRGRAQLVAFANEDVTVGAWMMALNREMVALGSLSAAHLWDCTCATP--TKWLRYDPNVFHHNCKALAQLQACAANL 345
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Match: D7FNA5_ECTSI (Hexosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA5_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 4.750e-12 Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query: 29 HRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLECFTNEDVTVGSWLLGVDREIVEMYDLRSSHLWDCLCARAQITSKTRKRQMFFHNCKGMSQLKLC 358
H+ YD +++ T G++DC P+Y QGAFYIL +V +L R RD L + ED +G WLLGVD+ M D+ S C C + +K+ F+H CK ++ +C
Sbjct: 142 HKLYDPEFLAATGGTIDCHPMYHQGAFYILGVDIVNYLNRSRDMLTVMSVEDAMMGLWLLGVDKV---MLDIGGSFY--CKCFTHPVP---QKKMSFYHFCKTDEKMDVC 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11999.1266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11999.1266.1 >prot_H-paniculata_contig11999.1266.1 ID=prot_H-paniculata_contig11999.1266.1|Name=mRNA_H-paniculata_contig11999.1266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp MKNPTHRWYDTKYVPHTLGSLDCFPVYMQGAFYILSKPLVEHLYRGRDHLback to top mRNA from alignment at H-paniculata_contig11999:296..7377- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11999.1266.1 ID=mRNA_H-paniculata_contig11999.1266.1|Name=mRNA_H-paniculata_contig11999.1266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7082bp|location=Sequence derived from alignment at H-paniculata_contig11999:296..7377- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11999:296..7377- >mRNA_H-paniculata_contig11999.1266.1 ID=mRNA_H-paniculata_contig11999.1266.1|Name=mRNA_H-paniculata_contig11999.1266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig11999:296..7377- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |