mRNA_H-paniculata_contig52696.12644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig52696.12644.1
Unique NamemRNA_H-paniculata_contig52696.12644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig52696.12644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig52696contigH-paniculata_contig52696:202..1211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930528.5052533-CDS-H-paniculata_contig52696:201..5181622930528.5052533-CDS-H-paniculata_contig52696:201..518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52696 202..518 +
1691481333.406341-CDS-H-paniculata_contig52696:201..5181691481333.406341-CDS-H-paniculata_contig52696:201..518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52696 202..518 +
1622930528.5254748-CDS-H-paniculata_contig52696:889..12111622930528.5254748-CDS-H-paniculata_contig52696:889..1211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52696 890..1211 +
1691481333.4169266-CDS-H-paniculata_contig52696:889..12111691481333.4169266-CDS-H-paniculata_contig52696:889..1211Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig52696 890..1211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig52696.12644.1prot_H-paniculata_contig52696.12644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig52696 202..1211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig52696.12644.1

>prot_H-paniculata_contig52696.12644.1 ID=prot_H-paniculata_contig52696.12644.1|Name=mRNA_H-paniculata_contig52696.12644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
LQKAELLVEQNPIFSSYLHGRSGRIPNTMKNQLQNQASNVVIGHKGSDWV
CNGGGVRMGRGPRAKQARLEPPRTVESNDIGVVWSYKHPPSGTFLAPNVA
DWCTKRFTDPGDAVLVSAAERDDLASLVLGEGRKYGALVSDATKASDVAK
NLDTACDIAVDRGWFGSLNQSPIMLGADTLPCSVPVSNISKVMSQELAKA
QESINDDDEDGDL
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mRNA from alignment at H-paniculata_contig52696:202..1211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig52696.12644.1 ID=mRNA_H-paniculata_contig52696.12644.1|Name=mRNA_H-paniculata_contig52696.12644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1010bp|location=Sequence derived from alignment at H-paniculata_contig52696:202..1211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGAAGGCTGAACTTCTGGTCGAGCAGAATCCAATTTTTTCGTCGTA
TCTACACGGTCGATCGGGGCGAATTCCCAACACTATGAAGAATCAGCTCC
AAAATCAAGCGAGCAACGTTGTGATTGGTCACAAGGGATCAGATTGGGTC
TGCAACGGCGGTGGTGTCAGGATGGGGCGAGGCCCGAGAGCAAAACAAGC
TCGTCTGGAGCCTCCTCGAACTGTGGAGAGTAATGACATTGGGGTTGTGT
GGAGCTACAAGCACCCTCCCTCCGGCACCTTCTTGGCGCCCAACGTGGCA
GACTGGTGCACTAAAAGGTAAGAATCGCCTGATTATGTTTGTCTACTACG
GGTACCAGTACGTCCACCAAAGTCGTTGAAACTATTAAATTGTGGGGGAG
ACTTACAGTAAATATGCCTTTCCTGCGGTCATCACACTCTTAAAGGTTGC
TATTTGCTTGCTGGTCTGGACTTATGATGTTGCCTGAAGGTTATGGTCCT
CTTGTTATAGGTGCTGGTGGTAAGGAATCTTTCTTGGTCCTGCGTGGAAT
TCGTTGTGTGCATAACTACACGGAGTCCGTTGAATTCATCAGTCAATCGT
TCACTCTTCTTCATTCCATTGCGTTGCTATGCTGCTGCACACATCCTGAA
CCATCACGCTGATGCCACCCTGCCGCTTGTGCCAACAGATTTACTGATCC
TGGTGATGCAGTATTGGTGAGTGCAGCCGAGAGAGATGATTTAGCTTCTC
TGGTGCTGGGAGAGGGGAGGAAATACGGTGCATTAGTATCCGATGCTACC
AAGGCTTCAGACGTTGCTAAGAATTTGGACACGGCTTGTGATATTGCTGT
AGACCGGGGGTGGTTCGGGTCCTTGAACCAGTCACCTATCATGCTGGGGG
CAGATACTTTGCCATGCAGCGTCCCGGTCTCGAATATATCTAAAGTAATG
TCACAGGAGCTTGCAAAGGCACAAGAGAGCATCAATGATGATGACGAGGA
TGGAGACCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig52696:202..1211+

>mRNA_H-paniculata_contig52696.12644.1 ID=mRNA_H-paniculata_contig52696.12644.1|Name=mRNA_H-paniculata_contig52696.12644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig52696:202..1211+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGCAGAAGGCTGAACTTCTGGTCGAGCAGAATCCAATTTTTTCGTCGTA
TCTACACGGTCGATCGGGGCGAATTCCCAACACTATGAAGAATCAGCTCC
AAAATCAAGCGAGCAACGTTGTGATTGGTCACAAGGGATCAGATTGGGTC
TGCAACGGCGGTGGTGTCAGGATGGGGCGAGGCCCGAGAGCAAAACAAGC
TCGTCTGGAGCCTCCTCGAACTGTGGAGAGTAATGACATTGGGGTTGTGT
GGAGCTACAAGCACCCTCCCTCCGGCACCTTCTTGGCGCCCAACGTGGCA
GACTGGTGCACTAAAAGCTGCAGAAGGCTGAACTTCTGGTCGAGCAGAAT
CCAATTTTTTCGTCGTATCTACACGGTCGATCGGGGCGAATTCCCAACAC
TATGAAGAATCAGCTCCAAAATCAAGCGAGCAACGTTGTGATTGGTCACA
AGGGATCAGATTGGGTCTGCAACGGCGGTGGTGTCAGGATGGGGCGAGGC
CCGAGAGCAAAACAAGCTCGTCTGGAGCCTCCTCGAACTGTGGAGAGTAA
TGACATTGGGGTTGTGTGGAGCTACAAGCACCCTCCCTCCGGCACCTTCT
TGGCGCCCAACGTGGCAGACTGGTGCACTAAAAGATTTACTGATCCTGGT
GATGCAGTATTGGTGAGTGCAGCCGAGAGAGATGATTTAGCTTCTCTGGT
GCTGGGAGAGGGGAGGAAATACGGTGCATTAGTATCCGATGCTACCAAGG
CTTCAGACGTTGCTAAGAATTTGGACACGGCTTGTGATATTGCTGTAGAC
CGGGGGTGGTTCGGGTCCTTGAACCAGTCACCTATCATGCTGGGGGCAGA
TACTTTGCCATGCAGCGTCCCGGTCTCGAATATATCTAAAGTAATGTCAC
AGGAGCTTGCAAAGGCACAAGAGAGCATCAATGATGATGACGAGGATGGA
GACCTGATTTACTGATCCTGGTGATGCAGTATTGGTGAGTGCAGCCGAGA
GAGATGATTTAGCTTCTCTGGTGCTGGGAGAGGGGAGGAAATACGGTGCA
TTAGTATCCGATGCTACCAAGGCTTCAGACGTTGCTAAGAATTTGGACAC
GGCTTGTGATATTGCTGTAGACCGGGGGTGGTTCGGGTCCTTGAACCAGT
CACCTATCATGCTGGGGGCAGATACTTTGCCATGCAGCGTCCCGGTCTCG
AATATATCTAAAGTAATGTCACAGGAGCTTGCAAAGGCACAAGAGAGCAT
CAATGATGATGACGAGGATGGAGACCTG
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