mRNA_H-paniculata_contig5200.12553.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5200.12553.1 vs. uniprot
Match: A0A6H5JG01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG01_9PHAE) HSP 1 Score: 300 bits (767), Expect = 2.780e-81 Identity = 320/1017 (31.47%), Postives = 444/1017 (43.66%), Query Frame = 3
Query: 3 GLGTVSALGLGTLLLGHNNSLQLIACTVEGVCHIFNIM-----WDSSFRAHETYVPTMHPLWSVPCPPNVTACCIADINGNDRQEVVMATSDGCVYVLSVEVNAEEDKQMENDPDREMQRTPQGTSLVGDAYANSDVYSSSSAEAPARGLTPSIAEDAINQAAHFLAHDEDAPSAMLDGTQSSSSIGGSGEEDKPRPIEYIHVDDLRFPGQDHPPAGSGSTTPEARATSWSATNAATTAELPSRAPLNPHLKTLLELKVSGVVTSLSLISFPG-------SAGSRYNRRTTPNASASTHSYSEDTVPRGPDDSKLSPAVNENRQDNCGTATASVSKNPPSGGGGD-----GVTGPAKDEYCVGGVYAAVGLESGIVQVMRLSSRRSESGRLDLISGSGR--QLFDVAESTA---------GSAAGAXXXXXXXXXXXXXXASTIPRFFYAAASEGRPRADSRTGGESLEHACDEKSGGRESGSLKLDAQDSGAEQ------------AAGTGXXXXXXXXXXWWVPVD-PNADIPLSMHGWTGSGLVVGLAPPHAHGYSAADNVVSATPTGAGTPLSHHNLSGHGTSNRGRRGXXXXXXXXXXNVGGRQVYGDAQRSFGVCTADGRVCCCRVVSTAGGLPQWKRMWARQTEVPFFAFHRMDYPNGLGALGHPDDEKETLLVACSWGGITFLFDAEGGHCIAFDPGPFLEHPVKAFVAGDVTTGPGTTEPCLVYVTDGGQVLMYHGLYDQAGPIAPQQFLPTILKDGTLDTLLVLVNKLLGRLR-RRSNQADRLLPSPTRPVPAHTTTSTTDGPGSVVFGLCSSAVAITPNADASFSSPIACDVQDPDGAHLNSKIDHEEEGRGEGGQQTEDLPLCKADAILARALLCPAGAAYVFSMTRRRRKRAERAAVSDAGALCTGGRGEERERDAPAAERGDLSWVTVEQGVWAAQRVVEELTAWK---RGQARG---------KDPSLKRYPCARGALEALAIYGSGSHREGLRSAVIEARS 2891
GLGT+SALGLG L LG+ + QLIACT EGVCHIFNI WD E+ ++P+WSVPCP NVT+CCIADI+G+ QEVVM T +G V+VL ++ N E+ K + + G GD SDV+ SS A A +R TP+ E + + LA D D A + + S+ P + + +D + TP++ T+ AA T L+PHLK LLELK VTSLS++ P S SR P A+A S++ G G T ++ P GG G T + GVY AVGL++G+V+VMRLSS+R + LDL+ S R +L ++++ A GSAAG + + + S +P A+ GG + + + + + R L+LD + G ++ A T W VP D P+AD W G GLVVG + A + + TP TPL GH + N RG + G S + DGR + +F R+D+ H + E+L V CSW G T +FDAEG C FD L P+ AFVAGD+TT G+T P LVY+ G+V+ YHGL +Q P QF+P ++KDG++D L L+ L RL+ R S QA L PS T P A S V + +S + +A A N D E D L +DAIL RA+LC +G T RR +R R + +D GA C+ R R+ A G+ S +TV +G A RV++E+ AW+ RG R +P+L +PC RG LEAL+ +GSG R+ LRSA+ E+++
Sbjct: 78 GLGTLSALGLGKLFLGYGDDQQLIACTEEGVCHIFNIRPADLKWDP-----ESDTGRVNPVWSVPCPKNVTSCCIADIDGDKMQEVVMGTREGGVHVLKIDFNQEQHKGKDEGVKTTEKSGWAGGVSTGDT-PRSDVFCSSPA-AQSRHSTPTADEPGLER----LAQDGDESDATPNPVRGPST----------GPSKSAYWEDRK-----------SMETPDS--TNAPGVVAADTQPF----SLSPHLKPLLELKAQDAVTSLSIVFVPEISSMPSTSITSRSGEGVAPPATAQADGNSDNVDGSG-----------------RGLTTCPPHEDRPQGGSGSMPALASRTDVMEQGASAAGVYVAVGLDTGVVEVMRLSSQRVGTRILDLVIASERSDRLSSISDAAAAADSHPAADGSAAGDTLGGGLSRLSSDDRDAHV--CLRSETSASQPAAE---GGPAAKLSGESNTMSR----LRLDRDEVGNQEKRVLPGAAAAAVATATAAGLVASVLCGWHVPADSPSAD------SWAGRGLVVGFSDTE-----AGTSPFAETPR---TPL------GHTSGNVPTRGWGSKTI---------EGVGAGASSSQTGSGDGR------------------------QEALHSFQRLDFE-------HEEGGTESLFVVCSWSGNTLMFDAEGMPCAGFDAEAHLPGPLTAFVAGDLTTPSGSTGPSLVYLGAEGKVVAYHGLPEQIESATPAQFIPILVKDGSMDKLKDLLTSLANRLQWRSSEQALPLFPSSTPPPDAQPADE-------------SECVQLEDGTGSSGPAEVATAA-----AAANIFSDDE-----------PDAALSLSDAILTRAVLCSSGLVVALGSTARRNER--RKSTADCGA-CSFDDARWR-REMRALAEGEGSTITVGEGAAAIDRVLKEMQAWQTRGRGSERPVRPLSPLLPAEPTLTHFPCLRGTLEALSCWGSGPRRDSLRSALKESKA 937
BLAST of mRNA_H-paniculata_contig5200.12553.1 vs. uniprot
Match: D8LTG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG0_ECTSI) HSP 1 Score: 181 bits (458), Expect = 2.610e-44 Identity = 130/361 (36.01%), Postives = 182/361 (50.42%), Query Frame = 3
Query: 1827 TEVPFFAFHRMDYPNGLGALGHPDDEKETLLVACSWGGITFLFDAEGGHCIAFDPGPFLEHPVKAFVAGDVTTGPGTTEPCLVYVTDGGQVLMYHGLYDQAGPIAPQQFLPTILKDGTLDTLLVLVNKLLGRLR-RRSNQADRLLPSPTRPVPAHTTTST-----TDGPGSVVFGLCSSAVAITPNADASFSSPIACDVQDPDGAHLNSKIDHEEEGRGEGGQQTEDLPLCKADAILARALLCPAGAAYVFSMTRRRRKRAERAAVSDAGALCTGGRGEERERDAPAAERGDLSWVTVEQGVWAAQRVVEELTAWKRGQARGKDPSLKRYPCARGALEALAIYGSGSHREGLRSAVIEARS 2891
TE +F R+D+ G E+L V CSW G TF+FDAEG C FD +L P+ AFVAGD+TT G+T P LVY+ G+V+ YHGL +Q P QF+P ++KDG++ TL L+ L RL+ R S QA L PS T P A + DG GS + A +S A ++ D D L +D+IL RA+LC G + T RR +R R + +D+G C+ R R+ A G+ S + V +G A RV++E+ AW + RG++P+LK +PC RG LEAL+ +GSG R+ LRSA+ E+ +
Sbjct: 232 TEEALHSFQRLDFEREEGGT-------ESLFVVCSWSGNTFMFDAEGMPCAGFDAEAYLPGPLTAFVAGDLTTPSGSTGPSLVYLGAEGKVVAYHGLPEQIESATPAQFMPILVKDGSMGTLKDLLTSLANRLQWRSSEQALPLFPSSTPPPDAQPADESECVQFADGTGS--------------SGPAEVASAAAANIFSDD---------------------EPDTALSLSDSILTRAVLCSPGLVVALASTARRNER--RKSTADSGG-CSFDDARWR-REMRALAEGEGSTIKVGEGAAAIDRVLKEMQAW---ETRGREPTLKHFPCLRGTLEALSSWGSGPRRDSLRSALKESEA 543 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5200.12553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5200.12553.1 >prot_H-paniculata_contig5200.12553.1 ID=prot_H-paniculata_contig5200.12553.1|Name=mRNA_H-paniculata_contig5200.12553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=927bp MWDSSFRAHETYVPTMHPLWSVPCPPNVTACCIADINGNDRQEVVMATSDback to top mRNA from alignment at H-paniculata_contig5200:1457..13292+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5200.12553.1 ID=mRNA_H-paniculata_contig5200.12553.1|Name=mRNA_H-paniculata_contig5200.12553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11836bp|location=Sequence derived from alignment at H-paniculata_contig5200:1457..13292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5200:1457..13292+ >mRNA_H-paniculata_contig5200.12553.1 ID=mRNA_H-paniculata_contig5200.12553.1|Name=mRNA_H-paniculata_contig5200.12553.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5562bp|location=Sequence derived from alignment at H-paniculata_contig5200:1457..13292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |