mRNA_H-paniculata_contig51971.12542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig51971.12542.1
Unique NamemRNA_H-paniculata_contig51971.12542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig51971.12542.1 vs. uniprot
Match: D7FQK1_ECTSI (BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 8.770e-21
Identity = 40/63 (63.49%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    4 LRILRMDIDPDFPEFPPRMTLCDALSDQSWPLDRRSYLYSPRWDTDRMASELYSYAVGAIPRL 192
            LRILR+DI PDFP  PP++TLCD+LS++ W LDRR+Y YSPRWD  RMA+ELY++AV ++ +L
Sbjct:  325 LRILRVDIGPDFPNNPPQLTLCDSLSEKCWSLDRRNYRYSPRWDAARMATELYTHAVDSLSKL 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig51971.12542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQK1_ECTSI8.770e-2163.49BRISC and BRCA1-A complex member 2 n=2 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig51971contigH-paniculata_contig51971:637..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size195
Cds size177
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.5973575-UTR-H-paniculata_contig51971:636..6541622930514.5973575-UTR-H-paniculata_contig51971:636..654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51971 637..654 +
1691481326.6377153-UTR-H-paniculata_contig51971:636..6541691481326.6377153-UTR-H-paniculata_contig51971:636..654Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig51971 637..654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930514.6265802-CDS-H-paniculata_contig51971:654..8311622930514.6265802-CDS-H-paniculata_contig51971:654..831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51971 655..831 +
1691481326.6611395-CDS-H-paniculata_contig51971:654..8311691481326.6611395-CDS-H-paniculata_contig51971:654..831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig51971 655..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig51971.12542.1prot_H-paniculata_contig51971.12542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig51971 655..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig51971.12542.1

>prot_H-paniculata_contig51971.12542.1 ID=prot_H-paniculata_contig51971.12542.1|Name=mRNA_H-paniculata_contig51971.12542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
MDIDPDFPEFPPRMTLCDALSDQSWPLDRRSYLYSPRWDTDRMASELYSY
AVGAIPRL*
back to top

mRNA from alignment at H-paniculata_contig51971:637..831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig51971.12542.1 ID=mRNA_H-paniculata_contig51971.12542.1|Name=mRNA_H-paniculata_contig51971.12542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig51971:637..831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTGCGGATATTGCGCATGGATATCGACCCGGATTTCCCGGAGTTTCC
TCCGCGCATGACCCTCTGCGACGCTCTCTCGGACCAGTCCTGGCCACTAG
ACAGACGGTCCTACCTTTACAGTCCGCGCTGGGACACGGATCGCATGGCG
TCCGAATTGTATTCGTATGCTGTAGGGGCGATACCGAGGCTGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig51971:637..831+

>mRNA_H-paniculata_contig51971.12542.1 ID=mRNA_H-paniculata_contig51971.12542.1|Name=mRNA_H-paniculata_contig51971.12542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig51971:637..831+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATCGACCCGGATTTCCCGGAGTTTCCTCCGCGCATGACCCTCTG
CGACGCTCTCTCGGACCAGTCCTGGCCACTAGACAGACGGTCCTACCTTT
ACAGTCCGCGCTGGGACACGGATCGCATGGCGTCCGAATTGTATTCGTAT
GCTGTAGGGGCGATACCGAGGCTGTAAATGGATATCGACCCGGATTTCCC
GGAGTTTCCTCCGCGCATGACCCTCTGCGACGCTCTCTCGGACCAGTCCT
GGCCACTAGACAGACGGTCCTACCTTTACAGTCCGCGCTGGGACACGGAT
CGCATGGCGTCCGAATTGTATTCGTATGCTGTAGGGGCGATACCGAGGCT
GTAA
back to top