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Homology
BLAST of mRNA_H-paniculata_contig5183.12519.1 vs. uniprot
Match: D8LKJ6_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ6_ECTSI) HSP 1 Score: 136 bits (342), Expect = 3.330e-35 Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = 1
Query: 343 RFLYMSTRKAYDGEWVGGTPKCGEYRDMPMELVDANVPDGSFPLPALTLKRSGGVLDEAIAIIRNDRAAHYGQPGRVFSNEEM 591
R+LYMSTRK Y+GEWV GTPKCGEY+DMP LVD +VPDGSFPLP LTLKRS VL+EA+A+IRN+RA + QPGRVF+ +EM
Sbjct: 195 RYLYMSTRKVYEGEWVEGTPKCGEYQDMPAALVDRSVPDGSFPLPELTLKRSSAVLNEAVAVIRNERAKRHSQPGRVFTTDEM 277
BLAST of mRNA_H-paniculata_contig5183.12519.1 vs. uniprot
Match: A0A836CJJ5_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 9.030e-17 Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1
Query: 343 RFLYMSTRKAYDGEWVGGTPKCGEYRDMPMELVDA-NVPDGSFPLPALTLKRSGGVLDEAIAIIRNDRAAHYGQPGRVFSNEEM 591
R++Y ST K Y+GEWV G+P CGEY+D P A PD +F LP L L R+G VL++AIA I N+RAA + Q GR + EE+
Sbjct: 185 RYMYRSTGKVYEGEWVRGSPWCGEYKDAPAPPGPAAGEPDEAFVLPELKLMRAGAVLNQAIARIHNERAARFHQGGRACTPEEL 268
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 65.1 |
| Seed ortholog evalue | 4.5e-08 |
| Seed eggNOG ortholog | 42099.EPrPV00000020100 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Source PGD |
| EggNOG OGs | 1MD5N@121069,COG4642@1,KOG0231@2759 |
| COG Functional cat. | S |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 621 |
| Cds size | 621 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5183.12519.1 >prot_H-paniculata_contig5183.12519.1 ID=prot_H-paniculata_contig5183.12519.1|Name=mRNA_H-paniculata_contig5183.12519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp
MDNDPTQEWEQDKRHGKGTLWVREGKKLRKQYAGDWKGDQRHGQGVFFYT
NGGRYEGEWENNGRSGQGIMVYETGEVYEGGWLDGKRSGPGSLRLPNGDV
FEGHWLLDKKEGPGRFLYMSTRKAYDGEWVGGTPKCGEYRDMPMELVDAN
VPDGSFPLPALTLKRSGGVLDEAIAIIRNDRAAHYGQPGRVFSNEEMASF
ILKKFP* back to topmRNA from alignment at H-paniculata_contig5183:311..2561+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig5183.12519.1 ID=mRNA_H-paniculata_contig5183.12519.1|Name=mRNA_H-paniculata_contig5183.12519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2251bp|location=Sequence derived from alignment at H-paniculata_contig5183:311..2561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAACGACCCGACCCAGGAATGGGAACAGGACAAGCGGCATGGCAA
AGGCACGTTGTGGGTGAGGGAAGGCAAAAAACTCCGAAAACAGTATGCTG
GAGACTGGAAAGGTACGGGACCTCGTGGCTGTTCTGGAAACACTAAATCC
GCTAAGTTGTTGATAGTGACGTTAGTACACGCAGTTGGCTGCAACTATGC
CTCCTAGATGGAATCAACGCGCTGAAAACAGCGATTGATGTCGTGGTAGT
CGTTCTGATTCACATCGCAAGCTCAAAGGGCGACGGATCAATCACGTTTT
GTTCTACCCATGACCACATGAGCGGGTCAGGGTCAATCATGGTGCTTGCT
AGAGTCAAGCCCCATCGATGTGTAGTTCAAGAGATGTCATGATGATATCT
GTAGTACCTTCGATCCATGTCGTTAGACGTTGATTCCCAGGCCTGTCAAC
CGCGTTAGACATCGACGTCATGGCCTCTGTGCTTTGTCGTCTGAAAAATT
GCCTGGCCAAGCGCGATCACAGGTTTGGACGTTGGTCCCTCATATTCTCT
CTCACTCCTGCACGATGGTCATCCGAACACGACCGTATTTTTTGTGTAAC
AGGCGACCAACGCCACGGACAGGGAGTGTTCTTCTACACGAACGGGGGGC
GATACGAAGGAGAATGGGAGAATAATGGTCGAAGTGGACAAGGCATAATG
GTGTACGAAACTGGGGAGGTGTGGTGTTCCAACTAGCCCCCTTCTTCGTT
TTCGCACTTGCGCAAATGAAAAGACACAGCAAAGCCTGACAGCATCACGC
GAACTCGCATGCCTCAACGTTTTTTGTCAAGTACGCCGAATGTGTTAAAT
ATACAACCTATAGACCCACGCCAGAACACTTGGCGACGTCATCTGCTCTG
CATGAAACTGTTCAGTAATCTTCCAACCCACTGAGGAAAGGACTTTCACC
AGCAAGTCTTGCCGCCGCTCTCGATTATACTATATCGAAATGACGTTTTC
TGTAGGTTTACGAGGGAGGCTGGCTAGATGGGAAGCGGAGTGGCCCAGGG
TCTCTTCGGCTGCCCAACGGAGACGTGTTCGAGGGACATTGGCTTCTTGA
CAAGAAGGAGGGTCCAGGTTAGCACACGGTAACAGGAACGACAGACACCC
CCTGAAAATGCTATCGGGTGTATATATGCAAAATATCTCGAGTTTTATGC
GATGTCTGCAAATAGTAGCGTTTTTATGTTTTGGGAGGGTCTGCATTGTA
GGGCCCATGTTCCTGCTGGTTTCACGTGTCGCTCCTGTACGGGGAGCTCA
CGGTTGTGTCCTCAGGTCGTTGTTTGTACGTACAGTGCTGCACAGAACTT
GAACAGATATACCCGTCAGGCTGACCGCGCCAAGAATAATACCTGCTGTA
CCCATCCCCGCTGAATGAGAGTTCCCTCGCCATGTTCTTGTCACTGCTGT
TATCCTGATCCCTGATATAACGCGATGCGTCAAAGGGCGCTTCCTGTACA
TGTCCACAAGGAAGGCCTACGACGGGGAGTGGGTGGGCGGAACGCCGAAG
TGTGGTGAATACAGGGATATGCCGATGGTGAGACTCAAAACCGAAAATAT
TGCAACTTTCCTAATTACATCGACCACCCACGATTTACGGTTTGTCTGAA
TCACTTTGAAATGTTGAACTGTACCGTAGGTAGGTGCCCTGAGTGATGAC
GGCTTCTCTTCGAGTTTGTCGCAGTGTGCCTTTTGGTTACACGGACAGAA
ATTGGCGATGCATGAAACTCGAACTTGGATGATTGGACTGGGTATAGACT
TGTACTTTTAGAGAGGGACGACATTCACGTTCAAATTGCTGCCGTATTTT
AGGTTGAAATCGAGAGGAAAAATTGCCGACTTCTTAGCTAACCTCTACAT
TCGGATATTTGTATGCCAACGGGTTTTCACGTAGCGTTTCAACTGAACCC
ATATACGATGTTGTCCAGATATATCTCAAATTCGGCCATAAAGCCGAGTT
CTCCACCACAACTAGCGACTCCCGTCTCATCTTTTCTCGGGAACGATCGC
TGTACTTCGCAGGAGTTGGTGGATGCCAACGTTCCGGACGGCAGTTTTCC
CCTCCCTGCTCTGACGTTGAAAAGGTCGGGTGGAGTATTGGATGAGGCCA
TCGCCATAATCCGAAACGACCGAGCCGCTCACTACGGACAACCCGGAAGG
GTGTTCAGCAATGAAGAGATGGCAAGTTTCATTCTAAAGAAATTTCCATG
A back to topCoding sequence (CDS) from alignment at H-paniculata_contig5183:311..2561+ >mRNA_H-paniculata_contig5183.12519.1 ID=mRNA_H-paniculata_contig5183.12519.1|Name=mRNA_H-paniculata_contig5183.12519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig5183:311..2561+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAACGACCCGACCCAGGAATGGGAACAGGACAAGCGGCATGGCAA
AGGCACGTTGTGGGTGAGGGAAGGCAAAAAACTCCGAAAACAGTATGCTG
GAGACTGGAAAGATGGATAACGACCCGACCCAGGAATGGGAACAGGACAA
GCGGCATGGCAAAGGCACGTTGTGGGTGAGGGAAGGCAAAAAACTCCGAA
AACAGTATGCTGGAGACTGGAAAGGCGACCAACGCCACGGACAGGGAGTG
TTCTTCTACACGAACGGGGGGCGATACGAAGGAGAATGGGAGAATAATGG
TCGAAGTGGACAAGGCATAATGGTGTACGAAACTGGGGAGGCGACCAACG
CCACGGACAGGGAGTGTTCTTCTACACGAACGGGGGGCGATACGAAGGAG
AATGGGAGAATAATGGTCGAAGTGGACAAGGCATAATGGTGTACGAAACT
GGGGAGGTTTACGAGGGAGGCTGGCTAGATGGGAAGCGGAGTGGCCCAGG
GTCTCTTCGGCTGCCCAACGGAGACGTGTTCGAGGGACATTGGCTTCTTG
ACAAGAAGGAGGGTCCAGGTTTACGAGGGAGGCTGGCTAGATGGGAAGCG
GAGTGGCCCAGGGTCTCTTCGGCTGCCCAACGGAGACGTGTTCGAGGGAC
ATTGGCTTCTTGACAAGAAGGAGGGTCCAGGGCGCTTCCTGTACATGTCC
ACAAGGAAGGCCTACGACGGGGAGTGGGTGGGCGGAACGCCGAAGTGTGG
TGAATACAGGGATATGCCGATGGGCGCTTCCTGTACATGTCCACAAGGAA
GGCCTACGACGGGGAGTGGGTGGGCGGAACGCCGAAGTGTGGTGAATACA
GGGATATGCCGATGGAGTTGGTGGATGCCAACGTTCCGGACGGCAGTTTT
CCCCTCCCTGCTCTGACGTTGAAAAGGTCGGGTGGAGTATTGGATGAGGC
CATCGCCATAATCCGAAACGACCGAGCCGCTCACTACGGACAACCCGGAA
GGGTGTTCAGCAATGAAGAGATGGCAAGTTTCATTCTAAAGAAATTTCCA
TGAGAGTTGGTGGATGCCAACGTTCCGGACGGCAGTTTTCCCCTCCCTGC
TCTGACGTTGAAAAGGTCGGGTGGAGTATTGGATGAGGCCATCGCCATAA
TCCGAAACGACCGAGCCGCTCACTACGGACAACCCGGAAGGGTGTTCAGC
AATGAAGAGATGGCAAGTTTCATTCTAAAGAAATTTCCATGA back to top
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