mRNA_H-paniculata_contig5168.12498.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Match: D7G7I4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7I4_ECTSI) HSP 1 Score: 156 bits (394), Expect = 2.700e-41 Identity = 77/133 (57.89%), Postives = 100/133 (75.19%), Query Frame = 2
Query: 206 MLNERQKQVVIEKVNDDINLPFISERREERMXXXXXXXXXXNVEPALNMLLPEVYVGCIKLALNEELHIKERRKQISDTLRAELSEPLSRELNKRVDCSMIPENLEGAVLKIVTNKIIDKFVEWTVGEVNEKF 604
MLNERQ+ V++ KVNDD+++P +SE RE R+ VEP++ ++P+VYV CIK AL+E IK RRK IS LR ELSEPL+R+LN+RVDCS IPE EG VLK+V+NK+ID+FVEWTVGEV+E+
Sbjct: 1 MLNERQRAVMVRKVNDDLDIPLLSESRERRLIEKFVDKIMPKVEPSMQAIMPDVYVRCIKKALDETETIKNRRKHISTLLRGELSEPLTRQLNERVDCSGIPEKWEGKVLKLVSNKVIDEFVEWTVGEVDERL 133
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Match: D7G7I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I3_ECTSI) HSP 1 Score: 113 bits (283), Expect = 1.050e-25 Identity = 58/128 (45.31%), Postives = 87/128 (67.97%), Query Frame = 2
Query: 188 DTPSSTMLNERQKQVVIEKVNDDINLPFISERREERMXXXXXXXXXXNVEPALNMLLPEVYVGCIKLALNEELHIKERRKQISDTLRAELSEPLSRELNKRVDCSMIPENLEGAVLKIVTNKIIDKFV 571
D + MLN++QK VI+ VN DI++P +SE RE R +EP+L+ L+P YV +K+ L+E L ER++++++ LR EL+ PLSR+LN+RVDCS IPE++EG VLKIV K++++ V
Sbjct: 32 DVIKNAMLNDKQKHDVIDAVNVDIDIPLVSEGRERRAIEKFVDQAVPAMEPSLSALMPPAYVDLVKVVLDETLAAAERKERMAELLRGELAVPLSRQLNERVDCSYIPESMEGKVLKIVAEKMVNEIV 159
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Match: A0A6H5JSA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA3_9PHAE) HSP 1 Score: 109 bits (273), Expect = 8.700e-25 Identity = 55/122 (45.08%), Postives = 85/122 (69.67%), Query Frame = 2
Query: 206 MLNERQKQVVIEKVNDDINLPFISERREERMXXXXXXXXXXNVEPALNMLLPEVYVGCIKLALNEELHIKERRKQISDTLRAELSEPLSRELNKRVDCSMIPENLEGAVLKIVTNKIIDKFV 571
MLN++QK VI+ VN D ++P ISE RE + +EP+L+ L+P Y+ +K+AL+E L ER++++S+ LR EL+ PLS++LN+RVDCS IPE++EG VLK+V K++++ V
Sbjct: 1 MLNDKQKHDVIDAVNVDFDIPLISEGRERGIIEKFVDQAVPAMEPSLSALMPPAYMDLVKVALDETLTAAERKERMSELLRGELAVPLSKQLNERVDCSYIPESMEGKVLKVVAEKMVNEIV 122
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Match: A0A6H5JD72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD72_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.140e-21 Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = 2
Query: 188 DTPSSTMLNERQKQVVIEKVNDDINLPFISERREERMXXXXXXXXXXNVEPALNMLLPEVYVGCIKLALNEELHIKERRKQISDTLRAELSEPLSRELNKRVDCSMIPENLEGAVLKIVTNKIIDKFV 571
D + MLN++QK VI+ VN D ++P +SE E R +EP+L+ L+P YV +K+AL+E L ER++ +S LR EL+ PLS++LN+RVD S IPE++EG VLK+V K++++ V
Sbjct: 50 DVIKTIMLNDKQKHDVIDAVNVDFDIPLLSEGIERRFIENFVDQAVPAMEPSLSALMPPAYVDLVKVALDETLTAAERKECMSALLRGELAVPLSKQLNERVDVSYIPESMEGKVLKVVAEKMVNEIV 177
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Match: A0A1X6P3R0_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3R0_PORUM) HSP 1 Score: 98.6 bits (244), Expect = 1.480e-20 Identity = 49/118 (41.53%), Postives = 77/118 (65.25%), Query Frame = 2
Query: 206 MLNERQKQVVIEKVNDDINLPFISERREERMXXXXXXXXXXNVEPALNMLLPEVYVGCIKLALNEELHIKERRKQISDTLRAELSEPLSRELNKRVDCSMIPENLEGAVLKIVTNKII 559
ML+ERQK+VV+ K N++I+LPF+SERRE R +EPAL +P++ V I+L L+E +KERR+++ D + + +EPL+ LN+RVD + +PE E VL+ V +++
Sbjct: 1 MLSERQKEVVVRKANEEIDLPFVSERRESRAIEKVVERLNPELEPALLQFMPKINVEMIRLLLDERKSVKERRERLVDLVLEQAAEPLTAALNERVDVAFLPERAESVVLRKVVERML 118
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Match: A0A7S4G473_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G473_9EUGL) HSP 1 Score: 78.6 bits (192), Expect = 1.280e-13 Identity = 50/141 (35.46%), Postives = 80/141 (56.74%), Query Frame = 2
Query: 206 MLNERQKQVVIEKVNDDINLPFISERREERMXXXXXXXXXXNVEPALNMLLPEVYVGCIKLALNEELHIKERRKQISDTLRAELSEPLSRELNKRVDCSMIPENLEGAVLKIVTNKIIDKFVEWTVGEVNEKFTHDDSDSD 628
+L+ Q V+ KVN+ +N+PF+SE E + +EP+L ++P YV IKL LNE+L E+ IS + L +PL+ LN+RVD ++PE++E L+ ++ID+ VE T+ ++FT D+ SD
Sbjct: 9 LLSVSQVDRVVAKVNNSMNIPFMSESSEASLIRQAVDTLNGAMEPSLLAIMPPDYVEIIKLCLNEKLSANEKLPLISALFKKNLRDPLAAALNERVDIPVLPESMEEWFLEKAVEEMIDEGVEHTL----QRFT-DEPVSD 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5168.12498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5168.12498.1 >prot_H-paniculata_contig5168.12498.1 ID=prot_H-paniculata_contig5168.12498.1|Name=mRNA_H-paniculata_contig5168.12498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp MLNERQKQVVIEKVNDDINLPFISERREERMIERLVDKIVPNVEPALNMLback to top mRNA from alignment at H-paniculata_contig5168:1489..5983+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5168.12498.1 ID=mRNA_H-paniculata_contig5168.12498.1|Name=mRNA_H-paniculata_contig5168.12498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4495bp|location=Sequence derived from alignment at H-paniculata_contig5168:1489..5983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5168:1489..5983+ >mRNA_H-paniculata_contig5168.12498.1 ID=mRNA_H-paniculata_contig5168.12498.1|Name=mRNA_H-paniculata_contig5168.12498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig5168:1489..5983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |