prot_H-paniculata_contig5165.12494.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5165.12494.1
Unique Nameprot_H-paniculata_contig5165.12494.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length79
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5165.12494.1 vs. uniprot
Match: A0A6H5K075_9PHAE (DUF4470 domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K075_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.390e-26
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 0 
Query:    2 LVSTLHCCFVRVHRASGSFPEEDVDGNPWFVLRDRLVRVKETRSDDPKAELMISFLLGSNTLASARHPGSLQLELRLQ 79
            L+STLHCCFVRV+R SG FP ED +G PW+VLR+RL+RVKET  DDP+AELM+SFLLGS TL  A +   ++LELRLQ
Sbjct:  823 LISTLHCCFVRVNRGSGPFPLEDKEGEPWYVLRERLLRVKETVPDDPEAELMVSFLLGSKTLIPA-NANQIELELRLQ 899
[Close]
BLAST of mRNA_H-paniculata_contig5165.12494.1 vs. uniprot
Match: A0A6H5JFV6_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV6_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 8.860e-5
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 0 
Query:    5 TLHCCFVRVHRASGSFPEEDVDGNPWFVLRDRLVRVKETRSDDPKAELMISFLLGSNTLASARHPGSLQLELR 77
            ++H  FVRV R      +ED+DG  W  L   L+ V++TR  DP+AELM+S ++ S  L  A  P   +L+LR
Sbjct:  562 SVHTVFVRVRRGGKCRGQEDLDG--WSSLNSHLM-VRDTREQDPEAELMVSAMVPSFALMMAP-PAFTELQLR 630
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5165.12494.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K075_9PHAE1.390e-2667.95DUF4470 domain-containing protein (Fragment) n=2 T... [more]
A0A6H5JFV6_9PHAE8.860e-541.10MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5165contigH-paniculata_contig5165:13458..13694 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5165.12494.1mRNA_H-paniculata_contig5165.12494.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5165 13458..13709 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5165.12494.1 ID=prot_H-paniculata_contig5165.12494.1|Name=mRNA_H-paniculata_contig5165.12494.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MLVSTLHCCFVRVHRASGSFPEEDVDGNPWFVLRDRLVRVKETRSDDPKA
ELMISFLLGSNTLASARHPGSLQLELRLQ
back to top